CSPI01G04340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G04340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	F-box family protein
Location	Chr1 : 2709604 .. 2711106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACCAATCAGCCCAAAAGAGATTCAGTAGCTTTGGACACTCAAATTTCAAGGTATCTTTAATCTTTCTTTTTCATGCAATTTAATATACGAACGTATATTTTTAAATATAGTAAAATAAATTAAAATAAATTTTAGATTTTATTGATATGATTGATAGAAGTATATCAGTGTCTAGTGATGTTTATTATTGAAATAATCTGAAAACTTGTTATATATTGTAAATGTTTTGTTAAATTTGCTATTTCTTATGATTTTCTTTTTAGTTATTGTATATTATTACGATAAAATAATTTTTTTAGTCTATGGAATTTTAACTTTTGGTGTGTTTCTAGTATATTAGAATACGTTTATTGAATTGGTTTGTTTTCAAATAGTGTAAAATTAACTAAAATATTTATAAATATAGCAAAAATTTATTATCTATTTGTGATCGAAGATAATAGATACCTTAGTCGAAACCTGAGATAAGTTAGTTTAGTTATTTAATGTATATTTTACTAAATGAAGGCTTTGGAGTCGTCATGTAATAGTGTCCTTGTAGTTTGTGAATTTTGTAGGGTTTGGTTTCTTTCATACACATTTGCTTAATTTTTTCTCACATATAAATGATTGACTTTTGCTTAAAAGTAATTGTAAATAACTTTTATTATTTTTCTAATAAATTATTTTTGTAAAGTTAGTCTGTAATAAATACTTCATCTCAAAATCTATTATCGTTGTTGTTATTGATTTTATTATTACTAATTTTTCATATAATTTATTACATGCAGAATAACAGAAAAGAATCAGATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCATTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAGTGTCGTCAAAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

mRNA sequence

ATGACTACCAATCAGCCCAAAAGAGATTCAGTAGCTTTGGACACTCAAATTTCAAGAATAACAGAAAAGAATCAGATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCATTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAGTGTCGTCAAAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

Coding sequence (CDS)

ATGACTACCAATCAGCCCAAAAGAGATTCAGTAGCTTTGGACACTCAAATTTCAAGAATAACAGAAAAGAATCAGATAGACGTCTTATCTCCAACTGTCATTAAATCACTCCCAAACGATTTATTAACCGAAGTTCTTGCAAAAGTTGCAACTTCTTCTTACATTGACTTGATCCAAGCCAAATTAGCCACCAAACATTTTCTTGAAGCATCTAACGACCGATACATATTTCAACATGCGTCTCTTGGAAACTTCAGGAATCTTCTATGGAACAACAGTCCGAAATTTTGGTCATTCATGGAAACTTGCAACAATAGTGAAAATCCAGAGAGCCTATATCGAAAAGGAATGTTGGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAATGGCTTATTTAAAACGATCGGCTCAAAAAGGGTATGTGGATGCTTGTTATGTATTTGGTGTTATTTTGTATGCTTCCAATTTGAAAGACGAAGGACTTGAGTTCTTGAAGAACAATGAGGTGAAATTAGGGAATAAAATGATAGAGTGTCGTCAAAGAGTTAAGGAGTTCGTATCGTATATTTGGATTAAGAATAAGATTTCGTTGTCGGAGGGAGATTCGTCCTATGGTCGGAAGTGTGATAAAAATATTAACTGTAGGGTTAACGAGAAAATAAATGTTTGGGATTCAAAAGATGAGGATGATTATTATGGAAAGTACACGTGTGAAGAGTGTAAATGGAACAACGAGGTTCTTAGATTTTGTAAAATGTTAAGAACGGGAAGATTTAGTTAA

Homology

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BLAST of CSPI01G04340 vs. Swiss-Prot
Match: FB79_ARATH (Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 58/192 (30.21%), Postives = 98/192 (51.04%), Query Frame = 1


Query: 34  IKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWN-N 93
           + SLP DLL E+ +    SS   +   +L +K F    +++Y+F   SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 94  SPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL 153
           S KF   +E C  S NPE+L++KG + +F    +  G+ YL  +A+KG  +A YV+GVIL
Sbjct: 84  SAKF---IERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 154 --YASNLKDEGLEFLKNNEVKL----GNKMIECRQRVKEFVSYIWIKNKISLSEGDSSY- 213
                  K +G E L +   +L     N+++E R ++++     W  +   + +  ++Y 
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 214 GRKCDKNINCRV 218
             KC  +   R+
Sbjct: 204 SEKCKCDCKTRM 212

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BLAST of CSPI01G04340 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 5.5e-148
Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 1


Query: 1   MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA 60
           MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA
Sbjct: 1   MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA 60

Query: 61  KLATKHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF 120
           KLATKHFLEASNDRYIFQH SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF
Sbjct: 61  KLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF 120

Query: 121 FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR 180
           FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR
Sbjct: 121 FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR 180

Query: 181 QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE 240
           QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE
Sbjct: 181 QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE 240

Query: 241 CKWNNEVLRFCKMLRTGRFS 261
           CKWNNEVLRFCKMLRTGRFS
Sbjct: 241 CKWNNEVLRFCKMLRTGRFS 260

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BLAST of CSPI01G04340 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.8e-35
Identity = 93/231 (40.26%), Postives = 133/231 (57.58%), Query Frame = 1


Query: 35  KSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNSP 94
           K  P DLLTEVLA+VA++S  DL  AKL+ K FLEA+++ YIF+H ++     + W  S 
Sbjct: 15  KYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISH 74

Query: 95  KFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL-- 154
              SF+  C  + NPE+L+R+GM+EFF+  K  SG  +LK +A+KG+V+A Y  GVIL  
Sbjct: 75  GASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVC 134

Query: 155 YASNLKDEGLEFLKN--NEVKLGNKMIECRQRVKEFVSYIWIKNKIS--LSEGDSSYGRK 214
           +    K EG+E L +  N       + ECR ++KE +  +WI  + +    E   S+GR 
Sbjct: 135 HGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGRT 194

Query: 215 CDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 260
           C    NC    K N     DE++Y    TC+ C W++E   FCK+LR   F
Sbjct: 195 C----NC---SKFNKRGWIDEEEY---TTCDYCVWDHEATLFCKILRARGF 235

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BLAST of CSPI01G04340 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-34
Identity = 90/231 (38.96%), Postives = 135/231 (58.44%), Query Frame = 1


Query: 32  TVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNL-LW 91
           + I+SL +DLL EVL +VA+SS+ DL  AKL+ ++FLEAS D ++ ++ S+  F  +  W
Sbjct: 13  STIESLSSDLLIEVLTRVASSSFTDLFNAKLSCRNFLEASKDTFVMKNISIEKFPTIPWW 72

Query: 92  NNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGV 151
               +  SF++ C  S NPE LYR+GM+EFF+  K  S   YLKR+ + G+++A YV+G+
Sbjct: 73  QVKDEVSSFLKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGI 132

Query: 152 ILY---ASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI-SLSEGDSSYG 211
           IL      + +++G++ L  N VK   K+ ECR+R + F   +WI+N I    E  S + 
Sbjct: 133 ILLCKGGDSNEEQGMKLL--NAVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQELTSYHA 192

Query: 212 RKCDKNINCRVNEKIN-VWDSKDED-DYYGKYTCEECKWNNEVLRFCKMLR 256
             C +  N  +  K    W   DED D      CE C W++EV  FCK+ R
Sbjct: 193 NTCGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

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BLAST of CSPI01G04340 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 88/232 (37.93%), Postives = 128/232 (55.17%), Query Frame = 1


Query: 29  LSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFR-- 88
           +S T IKSLP +L  E+ AKVAT S  D    KL  K FL A+ D Y+++HAS+ NF   
Sbjct: 17  VSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALV 76

Query: 89  NLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACY 148
            L W    K  SF++ C  S N E LYR+GML++FT  +   G+  LK +A +G+ DA Y
Sbjct: 77  PLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKY 136

Query: 149 VFGVILYASNLKDEGLE---FLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDS 208
           V+ ++L     +DEG     F     +K    +I CR+RVK FV  +W+KNK     G S
Sbjct: 137 VYCMLLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK---PNGKS 196

Query: 209 SY--GRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKM 254
           S+     CD     +++++   W S ++ D  G  +C+ C  ++E+  FC M
Sbjct: 197 SFCGSGTCDSERQKQLSKR---WSSFEDKD--GGISCQRCGADHELGFFCNM 238

[Close]

BLAST of CSPI01G04340 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 88/232 (37.93%), Postives = 128/232 (55.17%), Query Frame = 1


Query: 29  LSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFR-- 88
           +S T IKSLP +L  E+ AKVAT S  D    KL  K FL A+ D Y+++HAS+ NF   
Sbjct: 17  VSVTTIKSLPKELQVEIFAKVATRSIFDHCMIKLCCKEFLHAAEDDYVYRHASMENFALV 76

Query: 89  NLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACY 148
            L W    K  SF++ C  S N E LYR+GML++FT  +   G+  LK +A +G+ DA Y
Sbjct: 77  PLPWFTGNKESSFLKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKY 136

Query: 149 VFGVILYASNLKDEGLE---FLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDS 208
           V+ ++L     +DEG     F     +K    +I CR+RVK FV  +W+KNK     G S
Sbjct: 137 VYCMLLMCG--EDEGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK---PNGKS 196

Query: 209 SY--GRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKM 254
           S+     CD     +++++   W S ++ D  G  +C+ C  ++E+  FC M
Sbjct: 197 SFCGSGTCDSERQKQLSKR---WSSFEDKD--GGISCQRCGADHELGFFCNM 238

[Close]

BLAST of CSPI01G04340 vs. TAIR10
Match: AT1G67623.1 (AT1G67623.1 F-box family protein)

HSP 1 Score: 88.6 bits (218), Expect = 6.3e-18
Identity = 58/192 (30.21%), Postives = 98/192 (51.04%), Query Frame = 1


Query: 34  IKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWN-N 93
           + SLP DLL E+ +    SS   +   +L +K F    +++Y+F   SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 94  SPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL 153
           S KF   +E C  S NPE+L++KG + +F    +  G+ YL  +A+KG  +A YV+GVIL
Sbjct: 84  SAKF---IERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 154 --YASNLKDEGLEFLKNNEVKL----GNKMIECRQRVKEFVSYIWIKNKISLSEGDSSY- 213
                  K +G E L +   +L     N+++E R ++++     W  +   + +  ++Y 
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 214 GRKCDKNINCRV 218
             KC  +   R+
Sbjct: 204 SEKCKCDCKTRM 212

[Close]

BLAST of CSPI01G04340 vs. TAIR10
Match: AT1G74875.1 (AT1G74875.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-16
Identity = 60/221 (27.15%), Postives = 106/221 (47.96%), Query Frame = 1


Query: 45  VLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCN 104
           ++  V +SS  +    +L +K F   SNDRYI Q  SL     L W N  KF +F + C 
Sbjct: 23  LVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHNFFKRCR 82

Query: 105 NSENPESLYRKGMLEFF---THCKEAS-GMAYLKRSAQKGYVDACYVFGVIL--YASNLK 164
            S N E++YRKG++++F   +H ++   G+ ++ ++A  G  +A YV+G+IL       K
Sbjct: 83  KSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILICLGGKTK 142

Query: 165 DEGLEFLKN--NEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCR 224
             G + L +    + L N + E  ++ +  +  +W   +  +     SY R+     NC 
Sbjct: 143 QNGFKILSSLRKPLMLSNTIKE-MEKHRTHIRNMWWWGEPMMRHLQKSYVRE-----NCN 202

Query: 225 VNEKINVWDS-------KDEDDYYGKYTCEECKWNNEVLRF 251
            + +  ++ +        ++DD      CE C  ++EV  F
Sbjct: 203 CDGRTEIFPNYCFRHRFGEDDDMLTSSACEICLCHHEVKLF 237

[Close]

BLAST of CSPI01G04340 vs. TAIR10
Match: AT2G35280.1 (AT2G35280.1 F-box family protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-06
Identity = 36/142 (25.35%), Postives = 67/142 (47.18%), Query Frame = 1


Query: 34  IKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNS 93
           +++LP DLL E++AK+   S  D     L+ K    ++ND  + +  +L      L    
Sbjct: 11  LEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLA-----LLVKK 70

Query: 94  P----KFWSFMETCNNSENPESLYRKGMLEFFT--HCKEASGMAYLKRSAQKGYVDACYV 153
           P    K    M+ C  + NP++ Y KG++ +F   HC     + ++  +A  G  +A Y+
Sbjct: 71  PLSCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCD--VDLHHIGIAANGGQKEAIYM 130

Query: 154 FGVILYASNLKDEGLEFLKNNE 170
           + ++L      +EG  ++   E
Sbjct: 131 YAMLLLCRGRTEEGKTYMSQLE 145

[Close]

BLAST of CSPI01G04340 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 531.6 bits (1368), Expect = 7.9e-148
Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 1


Query: 1   MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA 60
           MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA
Sbjct: 1   MTTNQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQA 60

Query: 61  KLATKHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF 120
           KLATKHFLEASNDRYIFQH SLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF
Sbjct: 61  KLATKHFLEASNDRYIFQHVSLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF 120

Query: 121 FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR 180
           FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR
Sbjct: 121 FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR 180

Query: 181 QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE 240
           QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE
Sbjct: 181 QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE 240

Query: 241 CKWNNEVLRFCKMLRTGRFS 261
           CKWNNEVLRFCKMLRTGRFS
Sbjct: 241 CKWNNEVLRFCKMLRTGRFS 260

[Close]

BLAST of CSPI01G04340 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 7.5e-114
Identity = 203/257 (78.99%), Postives = 220/257 (85.60%), Query Frame = 1


Query: 4   NQPKRDSVALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLA 63
           N PK  S+   T ISR T+KN+  VLSPTVIKSLPNDLLTEVLAKVA SSY+DL+QAKLA
Sbjct: 3   NHPKTKSLPFHTLISRTTQKNRTGVLSPTVIKSLPNDLLTEVLAKVAASSYVDLVQAKLA 62

Query: 64  TKHFLEASNDRYIFQHASLGNFRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEFFTH 123
           TK FLEAS DRYIFQH SLGNF N LWNNSP+FWSF+ETCNN+ENPESLYRKGMLEFFTH
Sbjct: 63  TKQFLEASKDRYIFQHVSLGNFENHLWNNSPEFWSFIETCNNNENPESLYRKGMLEFFTH 122

Query: 124 CKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECRQRV 183
           CKEASG+AYLK SAQKGYVDACYV  VILYAS  KDEG EFLKN+E KL NKM ECR RV
Sbjct: 123 CKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKDEGFEFLKNHEAKLRNKMAECRWRV 182

Query: 184 KEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKW 243
           K FVSY+WIKN+IS S G+    RKCDKNINCRVNE+ N WD KDEDDYYG+YTCE+CKW
Sbjct: 183 KRFVSYLWIKNRIS-SSGEDPNDRKCDKNINCRVNERRNSWDWKDEDDYYGEYTCEKCKW 242

Query: 244 NNEVLRFCKMLRTGRFS 261
           NNEV RFCKMLRTGR+S
Sbjct: 243 NNEVFRFCKMLRTGRYS 258

[Close]

BLAST of CSPI01G04340 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 4.4e-90
Identity = 175/260 (67.31%), Postives = 209/260 (80.38%), Query Frame = 1


Query: 4   NQPKRDSV-ALDTQISRITEKNQIDVLSPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKL 63
           NQ KR S  + ++QIS  T+K      S ++I SLPNDLL EVLAKVA SSYIDL+QAKL
Sbjct: 3   NQLKRKSEPSFNSQISTRTKK-MCRPFSSSLIVSLPNDLLIEVLAKVAASSYIDLVQAKL 62

Query: 64  ATKHFLEASNDRYIFQHASLGN--FRNLLWNNSPKFWSFMETCNNSENPESLYRKGMLEF 123
           ATK FL ASND YIFQH SL N  FRNLLWNN+P+  SFMET NN+ENPESLYRKG +EF
Sbjct: 63  ATKLFLHASNDGYIFQHVSLENKSFRNLLWNNTPQSRSFMETLNNNENPESLYRKGTMEF 122

Query: 124 FTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKDEGLEFLKNNEVKLGNKMIECR 183
           F+H KEASG++YLK+SAQKGYVDACYV+GV++YA+NLK+EG+E+LK  E KLGNKM ECR
Sbjct: 123 FSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKEEGVEYLKMCEAKLGNKMAECR 182

Query: 184 QRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNINCRVNEKINVWDSKDEDDYYGKYTCEE 243
           +RVKEFV Y WIKN+IS+S+   S       N+NC+VNE+ N WD KDEDDYYG++TCE+
Sbjct: 183 RRVKEFVWYFWIKNRISMSKEICS-------NVNCKVNERSNGWDWKDEDDYYGEHTCEQ 242

Query: 244 CKWNNEVLRFCKMLRTGRFS 261
           CKW+NEVLRFC MLR G +S
Sbjct: 243 CKWSNEVLRFCNMLRRGGYS 254

[Close]

BLAST of CSPI01G04340 vs. NCBI nr
Match: gi|731376767|ref|XP_010656578.1| (PREDICTED: putative F-box protein At1g67623 [Vitis vinifera])

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 91/236 (38.56%), Postives = 142/236 (60.17%), Query Frame = 1


Query: 32  TVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNL-LW 91
           + I+ LP+DLL EVL +VATSS+ DL  AKL+ ++FLEAS+D++I ++ S+  F  +  W
Sbjct: 13  STIEYLPSDLLIEVLTRVATSSFTDLFNAKLSCRNFLEASDDKFIMKNISIEKFPAIPWW 72

Query: 92  NNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGV 151
               +  SF++ C  S NPE+LYR+GM+EFF+  K  SG  YLKR+ +  +++A YV+G+
Sbjct: 73  QVKDEVSSFLKACKESGNPEALYRQGMMEFFSWKKVESGEEYLKRALEMEHMEASYVYGI 132

Query: 152 ILY---ASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKI-SLSEGDSSYG 211
           IL      + +++G++ L  N VK   K+ ECR++ K F+  +WI+N I    E  + + 
Sbjct: 133 ILLCKGGESNEEQGMKLL--NAVKKSRKLGECRKKTKAFILSMWIRNPIVKCQELVNHHA 192

Query: 212 RKCDKNINCRVNEKINVW-------DSKDEDDYYGKYTCEECKWNNEVLRFCKMLR 256
           + C +  N  +  K   W       D++D+D     Y CE C W +EV  FCK+ R
Sbjct: 193 KTCGRRNNGGIGGKRGWWQWIDDREDNEDKDVEEVNY-CEGCMWEDEVSLFCKLFR 245

[Close]

BLAST of CSPI01G04340 vs. NCBI nr
Match: gi|224122932|ref|XP_002318952.1| (F-box family protein [Populus trichocarpa])

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 93/231 (40.26%), Postives = 133/231 (57.58%), Query Frame = 1


Query: 35  KSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHASLGNFRNLLWNNSP 94
           K  P DLLTEVLA+VA++S  DL  AKL+ K FLEA+++ YIF+H ++     + W  S 
Sbjct: 15  KYFPKDLLTEVLARVASASISDLFTAKLSCKEFLEAASENYIFEHITIEKLPVIPWRISH 74

Query: 95  KFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVIL-- 154
              SF+  C  + NPE+L+R+GM+EFF+  K  SG  +LK +A+KG+V+A Y  GVIL  
Sbjct: 75  GASSFLARCKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVC 134

Query: 155 YASNLKDEGLEFLKN--NEVKLGNKMIECRQRVKEFVSYIWIKNKIS--LSEGDSSYGRK 214
           +    K EG+E L +  N       + ECR ++KE +  +WI  + +    E   S+GR 
Sbjct: 135 HGGQFKQEGIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRREAGIGPEEPKSHGRT 194

Query: 215 CDKNINCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 260
           C    NC    K N     DE++Y    TC+ C W++E   FCK+LR   F
Sbjct: 195 C----NC---SKFNKRGWIDEEEY---TTCDYCVWDHEATLFCKILRARGF 235

The following BLAST results are available for this feature:

BLAST of CSPI01G04340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB79_ARATH	1.1e-16	30.21	Putative F-box protein At1g67623 OS=Arabidopsis thaliana GN=At1g67623 PE=3 SV=1	[more]

BLAST of CSPI01G04340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS96_CUCSA	5.5e-148	99.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1	[more]
B9I6Z5_POPTR	4.8e-35	40.26	F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1	[more]
A5AV49_VITVI	9.1e-34	38.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1	[more]
A0A0B2P0Z6_GLYSO	2.6e-28	37.93	Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1	[more]
I1KMZ2_SOYBN	2.6e-28	37.93	Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2	[more]

BLAST of CSPI01G04340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67623.1	6.3e-18	30.21	F-box family protein	[more]
AT1G74875.1	4.5e-16	27.15	FUNCTIONS IN: molecular_function unknown	[more]
AT2G35280.1	5.5e-06	25.35	F-box family protein	[more]

BLAST of CSPI01G04340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439561\|ref\|XP_004137554.1\|	7.9e-148	99.62	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|659107472\|ref\|XP_008453691.1\|	7.5e-114	78.99	PREDICTED: putative F-box protein At1g67623 [Cucumis melo]	[more]
gi\|449435498\|ref\|XP_004135532.1\|	4.4e-90	67.31	PREDICTED: putative F-box protein At1g67623 [Cucumis sativus]	[more]
gi\|731376767\|ref\|XP_010656578.1\|	2.4e-35	38.56	PREDICTED: putative F-box protein At1g67623 [Vitis vinifera]	[more]
gi\|224122932\|ref\|XP_002318952.1\|	6.9e-35	40.26	F-box family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04340.1	CSPI01G04340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 99..154 score: 6.
None	No IPR available	PANTHER	PTHR33784	FAMILY NOT NAMED	coord: 19..259 score: 1.7
None	No IPR available	PANTHER	PTHR33784:SF4	SUBFAMILY NOT NAMED	coord: 19..259 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G04340	MELO3C029741.2	Melon (DHL92) v3.6.1	cpimedB050
CSPI01G04340	CsaV3_1G004340	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G04340	Cucsa.111550	Cucumber (Gy14) v1	cgycpiB137
CSPI01G04340	CsGy1G004240	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G04340	Cucurbita maxima (Rimu)	cmacpiB051
CSPI01G04340	Cucurbita maxima (Rimu)	cmacpiB086
CSPI01G04340	Cucurbita maxima (Rimu)	cmacpiB223
CSPI01G04340	Cucurbita maxima (Rimu)	cmacpiB397
CSPI01G04340	Cucurbita moschata (Rifu)	cmocpiB042
CSPI01G04340	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G04340	Cucurbita moschata (Rifu)	cmocpiB209
CSPI01G04340	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G04340	Cucumber (Chinese Long) v2	cpicuB006
CSPI01G04340	Melon (DHL92) v3.5.1	cpimeB029
CSPI01G04340	Melon (DHL92) v3.5.1	cpimeB056
CSPI01G04340	Watermelon (Charleston Gray)	cpiwcgB061
CSPI01G04340	Watermelon (Charleston Gray)	cpiwcgB084
CSPI01G04340	Watermelon (97103) v1	cpiwmB068
CSPI01G04340	Watermelon (97103) v1	cpiwmB100
CSPI01G04340	Cucurbita pepo (Zucchini)	cpecpiB027
CSPI01G04340	Cucurbita pepo (Zucchini)	cpecpiB363
CSPI01G04340	Cucurbita pepo (Zucchini)	cpecpiB509
CSPI01G04340	Cucurbita pepo (Zucchini)	cpecpiB657
CSPI01G04340	Bottle gourd (USVL1VR-Ls)	cpilsiB025
CSPI01G04340	Bottle gourd (USVL1VR-Ls)	cpilsiB071
CSPI01G04340	Melon (DHL92) v3.6.1	cpimedB029
CSPI01G04340	Cucumber (Gy14) v2	cgybcpiB005
CSPI01G04340	Silver-seed gourd	carcpiB0419
CSPI01G04340	Silver-seed gourd	carcpiB0628
CSPI01G04340	Silver-seed gourd	carcpiB0821
CSPI01G04340	Cucumber (Chinese Long) v3	cpicucB004
CSPI01G04340	Watermelon (97103) v2	cpiwmbB057
CSPI01G04340	Watermelon (97103) v2	cpiwmbB080
CSPI01G04340	Wax gourd	cpiwgoB039
CSPI01G04340	Wax gourd	cpiwgoB079
CSPI01G04340	Wild cucumber (PI 183967)	cpicpiB001
CSPI01G04340	Cucumber (Gy14) v1	cgycpiB161