CsGy1G004200 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G004200
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPentatricopeptide repeat-containing protein At3g18020
LocationChr1 : 2666512 .. 2668557 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCGCGCTGCCCACCGATCGCTCTCGATCAAAATCGTTTCCATTACGCCATCGATCTCGATTCTCTTCACCAGAACCGCCAATTTCCAACGGCTCCACCCGGAAAATGGATCAGACAGCCGTGAATGGGCACCGGAGGAGAGCGTCGCCGACGTCTCTTACTGGACGAAGAAGATTCACGGCCTCTGTACTAAGGATCGAAACGTCGATGAAGCGCTTCAGTTACTTGACGCCCTTCGCCTTCACGGCTACCAATTTCACCCTCTCAATCTCGCTAGCGTAATCCATGGTCTCTGTGATGCACACCGGTTTCATGAAGCGCACTGCCGTTTTATGCTCTCTATTGCTTCTCGGTGTGTGCCTGATGAACGGACTTGTAATGTTCTTATTGCTCGTTTACTTGATTATCGATCCCCGTATTGCACCTTGCGCTTGCTTGTTTGTTTGTTTGATGCTAAGCCTGAGTTTGTTCCTTCTATAGTGAATTATAACCGTTTGATTGATCAGTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTAGGGGGCATTGTCCAAATGTTGTTTCCTATACTGCCTTGATTGATGGATACTGCCGTGTTTGTAATGTATCTGCTGCCGAGAAACTGTTTGACGAAATGCCTGGGAATTATGTGGAGCCTAATTCACTTACATACAGTGTTTTAATTAATGGGTTTCTTTACAAGCGAGATTTTGAAACTGGGAAGGCGTTGATATGTAACCTTTGGGAGAGAATGAAGGGAGAATTGGACTCCTCTGTGAACAATGCAGCTTTTGCCCATCTTGTTGATTCTTTGTGCCTAGTGGGTTCTTTCCACGAGGTGTTTACAATTGCAGAAGATATGCCTCAGGGGCAGAGTGTGCCTGAGGAATTTGCCTATGGGCAGATGATAGATTCACTTTGCAAAGCTAAAAGATATCATGGAGCCTCAAGAATTGTTTATATAATGAGGAAGAAGGGTCTTAATCCTGGTTTGCTATCATATAATTCTATTATTCATGGGCTTAGCAAGGAGGGAGGTTGTATGCGGGCTTATCAATTGTTAGTAGAAGGAGTTGAATTTGGTTACTCACCATCTGAACATACGTATAAGGTTCTTTTAGAAGGTCTTTGCAAAGAGCTAGACACCCAAAAGGCTAAGGAAGTTCTTCAAATAATGATACATAAACAAGGTGTGGATAGAACTAGAATTTACAACATATACTTGAGAGCTGTCTGCCTTACAAATAACTCAACTGAGCTCTTAAATACGCTTGTTGAAATGCTTCAAACTAATTGTCAACCTGATGTCATTACCCTCAATACAGTCATCAAGGGATTTTGCAAGGTTGGAAGCATTGAAGAAGCTCTAAAGGTATTAAACGATATGATTGGTGGTAAATTCTGTACCCCTGATCATGTGACCTTCACAACTATTATATTTGGCTTACTGAATGTTGGGAGGATCCGGGAATCTCTTGATATATTGTATAAGGTAATGCCAGAAAAAGGCATTGTGCCAGGTGTTATCACGTATAATGCCACTATTCGAGGTTTGTTTAAACTTCAACAGGCAAACCAAGCAATGAATACCTTTGACAGAATGGTCAGAAATGGCATCCAAGCTGACAGCACTACTTATGCTGTGGTAATTGATGGGTTATGCGATTGTAATCAAATTGAAGAAGTTAAGAGATTCTGGAAAGATATAGTCTGGCCATCAAAGATCCATGATAGTTTTGTTTATTCAGCTATTCTAAAAGGGCTTTGCCACTCCAGCAAATTTAACGAAGCTTGCCATTTCCTATACGAACTATCTGATTCGGGGGTTTCCCCAACTATATTTTGCTACAATATTGTGATCAATACTGCGTGTAAGTTGGGATTGAAAGGAGAAGCATATCGACTGGTCAAAGAGATGAGAAAAAATGGGTTAGCACCTGATGCTGTAACTTGGAGGATTCTTCACAAATTACATCAAAATGAGACAGACACAATCCCCTTCCAAGGATTTAACTAA

mRNA sequence

ATGTTTCGCGCTGCCCACCGATCGCTCTCGATCAAAATCGTTTCCATTACGCCATCGATCTCGATTCTCTTCACCAGAACCGCCAATTTCCAACGGCTCCACCCGGAAAATGGATCAGACAGCCGTGAATGGGCACCGGAGGAGAGCGTCGCCGACGTCTCTTACTGGACGAAGAAGATTCACGGCCTCTGTACTAAGGATCGAAACGTCGATGAAGCGCTTCAGTTACTTGACGCCCTTCGCCTTCACGGCTACCAATTTCACCCTCTCAATCTCGCTAGCGTAATCCATGGTCTCTGTGATGCACACCGGTTTCATGAAGCGCACTGCCGTTTTATGCTCTCTATTGCTTCTCGGTGTGTGCCTGATGAACGGACTTGTAATGTTCTTATTGCTCGTTTACTTGATTATCGATCCCCGTATTGCACCTTGCGCTTGCTTGTTTGTTTGTTTGATGCTAAGCCTGAGTTTGTTCCTTCTATAGTGAATTATAACCGTTTGATTGATCAGTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTAGGGGGCATTGTCCAAATGTTGTTTCCTATACTGCCTTGATTGATGGATACTGCCGTGTTTGTAATGTATCTGCTGCCGAGAAACTGTTTGACGAAATGCCTGGGAATTATGTGGAGCCTAATTCACTTACATACAGTGTTTTAATTAATGGGTTTCTTTACAAGCGAGATTTTGAAACTGGGAAGGCGTTGATATGTAACCTTTGGGAGAGAATGAAGGGAGAATTGGACTCCTCTGTGAACAATGCAGCTTTTGCCCATCTTGTTGATTCTTTGTGCCTAGTGGGTTCTTTCCACGAGGTGTTTACAATTGCAGAAGATATGCCTCAGGGGCAGAGTGTGCCTGAGGAATTTGCCTATGGGCAGATGATAGATTCACTTTGCAAAGCTAAAAGATATCATGGAGCCTCAAGAATTGTTTATATAATGAGGAAGAAGGGTCTTAATCCTGGTTTGCTATCATATAATTCTATTATTCATGGGCTTAGCAAGGAGGGAGGTTGTATGCGGGCTTATCAATTGTTAGTAGAAGGAGTTGAATTTGGTTACTCACCATCTGAACATACGTATAAGGTTCTTTTAGAAGGTCTTTGCAAAGAGCTAGACACCCAAAAGGCTAAGGAAGTTCTTCAAATAATGATACATAAACAAGGTGTGGATAGAACTAGAATTTACAACATATACTTGAGAGCTGTCTGCCTTACAAATAACTCAACTGAGCTCTTAAATACGCTTGTTGAAATGCTTCAAACTAATTGTCAACCTGATGTCATTACCCTCAATACAGTCATCAAGGGATTTTGCAAGGTTGGAAGCATTGAAGAAGCTCTAAAGGTATTAAACGATATGATTGGTGGTAAATTCTGTACCCCTGATCATGTGACCTTCACAACTATTATATTTGGCTTACTGAATGTTGGGAGGATCCGGGAATCTCTTGATATATTGTATAAGGTAATGCCAGAAAAAGGCATTGTGCCAGGTGTTATCACGTATAATGCCACTATTCGAGGTTTGTTTAAACTTCAACAGGCAAACCAAGCAATGAATACCTTTGACAGAATGGTCAGAAATGGCATCCAAGCTGACAGCACTACTTATGCTGTGGTAATTGATGGGTTATGCGATTGTAATCAAATTGAAGAAGTTAAGAGATTCTGGAAAGATATAGTCTGGCCATCAAAGATCCATGATAGTTTTGTTTATTCAGCTATTCTAAAAGGGCTTTGCCACTCCAGCAAATTTAACGAAGCTTGCCATTTCCTATACGAACTATCTGATTCGGGGGTTTCCCCAACTATATTTTGCTACAATATTGTGATCAATACTGCGTGTAAGTTGGGATTGAAAGGAGAAGCATATCGACTGGTCAAAGAGATGAGAAAAAATGGGTTAGCACCTGATGCTGTAACTTGGAGGATTCTTCACAAATTACATCAAAATGAGACAGACACAATCCCCTTCCAAGGATTTAACTAA

Coding sequence (CDS)

ATGTTTCGCGCTGCCCACCGATCGCTCTCGATCAAAATCGTTTCCATTACGCCATCGATCTCGATTCTCTTCACCAGAACCGCCAATTTCCAACGGCTCCACCCGGAAAATGGATCAGACAGCCGTGAATGGGCACCGGAGGAGAGCGTCGCCGACGTCTCTTACTGGACGAAGAAGATTCACGGCCTCTGTACTAAGGATCGAAACGTCGATGAAGCGCTTCAGTTACTTGACGCCCTTCGCCTTCACGGCTACCAATTTCACCCTCTCAATCTCGCTAGCGTAATCCATGGTCTCTGTGATGCACACCGGTTTCATGAAGCGCACTGCCGTTTTATGCTCTCTATTGCTTCTCGGTGTGTGCCTGATGAACGGACTTGTAATGTTCTTATTGCTCGTTTACTTGATTATCGATCCCCGTATTGCACCTTGCGCTTGCTTGTTTGTTTGTTTGATGCTAAGCCTGAGTTTGTTCCTTCTATAGTGAATTATAACCGTTTGATTGATCAGTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTAGGGGGCATTGTCCAAATGTTGTTTCCTATACTGCCTTGATTGATGGATACTGCCGTGTTTGTAATGTATCTGCTGCCGAGAAACTGTTTGACGAAATGCCTGGGAATTATGTGGAGCCTAATTCACTTACATACAGTGTTTTAATTAATGGGTTTCTTTACAAGCGAGATTTTGAAACTGGGAAGGCGTTGATATGTAACCTTTGGGAGAGAATGAAGGGAGAATTGGACTCCTCTGTGAACAATGCAGCTTTTGCCCATCTTGTTGATTCTTTGTGCCTAGTGGGTTCTTTCCACGAGGTGTTTACAATTGCAGAAGATATGCCTCAGGGGCAGAGTGTGCCTGAGGAATTTGCCTATGGGCAGATGATAGATTCACTTTGCAAAGCTAAAAGATATCATGGAGCCTCAAGAATTGTTTATATAATGAGGAAGAAGGGTCTTAATCCTGGTTTGCTATCATATAATTCTATTATTCATGGGCTTAGCAAGGAGGGAGGTTGTATGCGGGCTTATCAATTGTTAGTAGAAGGAGTTGAATTTGGTTACTCACCATCTGAACATACGTATAAGGTTCTTTTAGAAGGTCTTTGCAAAGAGCTAGACACCCAAAAGGCTAAGGAAGTTCTTCAAATAATGATACATAAACAAGGTGTGGATAGAACTAGAATTTACAACATATACTTGAGAGCTGTCTGCCTTACAAATAACTCAACTGAGCTCTTAAATACGCTTGTTGAAATGCTTCAAACTAATTGTCAACCTGATGTCATTACCCTCAATACAGTCATCAAGGGATTTTGCAAGGTTGGAAGCATTGAAGAAGCTCTAAAGGTATTAAACGATATGATTGGTGGTAAATTCTGTACCCCTGATCATGTGACCTTCACAACTATTATATTTGGCTTACTGAATGTTGGGAGGATCCGGGAATCTCTTGATATATTGTATAAGGTAATGCCAGAAAAAGGCATTGTGCCAGGTGTTATCACGTATAATGCCACTATTCGAGGTTTGTTTAAACTTCAACAGGCAAACCAAGCAATGAATACCTTTGACAGAATGGTCAGAAATGGCATCCAAGCTGACAGCACTACTTATGCTGTGGTAATTGATGGGTTATGCGATTGTAATCAAATTGAAGAAGTTAAGAGATTCTGGAAAGATATAGTCTGGCCATCAAAGATCCATGATAGTTTTGTTTATTCAGCTATTCTAAAAGGGCTTTGCCACTCCAGCAAATTTAACGAAGCTTGCCATTTCCTATACGAACTATCTGATTCGGGGGTTTCCCCAACTATATTTTGCTACAATATTGTGATCAATACTGCGTGTAAGTTGGGATTGAAAGGAGAAGCATATCGACTGGTCAAAGAGATGAGAAAAAATGGGTTAGCACCTGATGCTGTAACTTGGAGGATTCTTCACAAATTACATCAAAATGAGACAGACACAATCCCCTTCCAAGGATTTAACTAA

Protein sequence

MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVAHRVLFDMKSRGHCPNVVSYTALIDGYCRVCNVSAAEKLFDEMPGNYVEPNSLTYSVLINGFLYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKKGLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEFGYSPSEHTYKVLLEGLCKELDTQKAKEVLQIMIHKQGVDRTRIYNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATIRGLFKLQQANQAMNTFDRMVRNGIQADSTTYAVVIDGLCDCNQIEEVKRFWKDIVWPSKIHDSFVYSAILKGLCHSSKFNEACHFLYELSDSGVSPTIFCYNIVINTACKLGLKGEAYRLVKEMRKNGLAPDAVTWRILHKLHQNETDTIPFQGFN
Homology
[Close]
BLAST of CsGy1G004200 vs. NCBI nr
Match: XP_011649150.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativus] >KGN63871.1 hypothetical protein Csa_1G025030 [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 4.3e-141
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 

Query: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60
           MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI
Sbjct: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60

Query: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120
           HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC
Sbjct: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120

Query: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180
           VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA
Sbjct: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180

Query: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300
           XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG
Sbjct: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300

Query: 301 QSVPE 306
           QSVPE
Sbjct: 301 QSVPE 305

[Close]
BLAST of CsGy1G004200 vs. NCBI nr
Match: XP_008453476.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_008453477.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_008453478.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_016901429.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo])

HSP 1 Score: 459.1 bits (1180), Expect = 2.5e-125
Identity = 280/305 (91.80%), Postives = 286/305 (93.77%), Query Frame = 0 

Query: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60
           MFRAAHRSLSIKI+SITPSISILFTRTANF RL  ENGSD R+WAPEESVADVSYWTKKI
Sbjct: 1   MFRAAHRSLSIKILSITPSISILFTRTANFPRLQLENGSDGRQWAPEESVADVSYWTKKI 60

Query: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120
           HGLCTKDRNVDEAL+L+DALRLHGYQFHPLNLAS+IHGLCDAHRFHEAHCRFMLSIASRC
Sbjct: 61  HGLCTKDRNVDEALRLVDALRLHGYQFHPLNLASIIHGLCDAHRFHEAHCRFMLSIASRC 120

Query: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180
           VPDERTCNVLIARLL YRSPYCTLRLL CLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA
Sbjct: 121 VPDERTCNVLIARLLHYRSPYCTLRLLACLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180

Query: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300
           XX           IC LWERM GE+DSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG
Sbjct: 241 XXXXXXXXXXXXXICKLWERMTGEMDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300

Query: 301 QSVPE 306
           QSVPE
Sbjct: 301 QSVPE 305

[Close]
BLAST of CsGy1G004200 vs. NCBI nr
Match: XP_022921380.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucurbita moschata])

HSP 1 Score: 427.6 bits (1098), Expect = 8.2e-116
Identity = 266/309 (86.08%), Postives = 279/309 (90.29%), Query Frame = 0 

Query: 1   MFRAAHRSLSI----KIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYW 60
           MF AA +SLS+    KIVSITPS S LFTRTANF++  P NGSD R+WAPEESVADVSYW
Sbjct: 1   MFLAARQSLSVKTSPKIVSITPSFSNLFTRTANFRQYQPGNGSDGRDWAPEESVADVSYW 60

Query: 61  TKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSI 120
           TKKIHGLCTKDRNVDEAL+LLDALRLHGYQ HPLNL S+IH LCDA RFHEAHCRFMLS+
Sbjct: 61  TKKIHGLCTKDRNVDEALRLLDALRLHGYQMHPLNLGSIIHSLCDARRFHEAHCRFMLSV 120

Query: 121 ASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSL 180
           ASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKP FVPSIVNYNRLIDQF  FSL
Sbjct: 121 ASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPGFVPSIVNYNRLIDQFSKFSL 180

Query: 181 PNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           P+VAHRVLFDMKS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 PDVAHRVLFDMKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAED 300
           XXXXXX KRDFETGKA IC LWE M GE + SVN+AAFAHLVDSLCL GSFHE+F+IAED
Sbjct: 241 XXXXXXXKRDFETGKAFICKLWEEMNGETNPSVNSAAFAHLVDSLCLAGSFHELFSIAED 300

Query: 301 MPQGQSVPE 306
           MPQGQSVPE
Sbjct: 301 MPQGQSVPE 309

[Close]
BLAST of CsGy1G004200 vs. NCBI nr
Match: XP_022988488.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucurbita maxima])

HSP 1 Score: 427.6 bits (1098), Expect = 8.2e-116
Identity = 263/309 (85.11%), Postives = 279/309 (90.29%), Query Frame = 0 

Query: 1   MFRAAHRSLSI----KIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYW 60
           MF AA +SLS+    KIVSITPS S LFTRTANF++  P NGSD R+W PEESVADVSYW
Sbjct: 1   MFLAARQSLSVKTSLKIVSITPSFSNLFTRTANFRQYQPGNGSDGRDWTPEESVADVSYW 60

Query: 61  TKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSI 120
           T KIHGLCTKDRNVDEAL+LLDALRLHGYQ HPLNL S+IHGLCDA RFHEAHCRFMLS+
Sbjct: 61  TNKIHGLCTKDRNVDEALRLLDALRLHGYQMHPLNLGSIIHGLCDARRFHEAHCRFMLSV 120

Query: 121 ASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSL 180
           ASRCVPDERTCNVLIARLLDY+SPYCTLRLLVCLF+AKP FVPSIVNYNRL+DQFC FSL
Sbjct: 121 ASRCVPDERTCNVLIARLLDYQSPYCTLRLLVCLFEAKPGFVPSIVNYNRLVDQFCKFSL 180

Query: 181 PNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           P+VAHRVLFDMKS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 PDVAHRVLFDMKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAED 300
           XXXXXXYKRDFETG A IC LWE M GE D SVN+AAFAHLVDSLCL GSFHE+F+IAE+
Sbjct: 241 XXXXXXYKRDFETGMAFICKLWEEMNGETDPSVNSAAFAHLVDSLCLTGSFHELFSIAEN 300

Query: 301 MPQGQSVPE 306
           MPQGQSVPE
Sbjct: 301 MPQGQSVPE 309

[Close]
BLAST of CsGy1G004200 vs. NCBI nr
Match: XP_023515599.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426.4 bits (1095), Expect = 1.8e-115
Identity = 265/309 (85.76%), Postives = 278/309 (89.97%), Query Frame = 0 

Query: 1   MFRAAHRSLSI----KIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYW 60
           MF AA +SLS+    KIVS TP  S LFTRTANF+R  P NGSD R+WAPEESVADVSYW
Sbjct: 1   MFLAARQSLSVKTSLKIVSTTPLFSNLFTRTANFRRYQPGNGSDGRDWAPEESVADVSYW 60

Query: 61  TKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSI 120
           TKKIHGLCTKDRNVDEAL+LLDALRLHGYQ HPLNL S+IHGLCDA RFHEAHCRFMLS+
Sbjct: 61  TKKIHGLCTKDRNVDEALRLLDALRLHGYQMHPLNLGSIIHGLCDARRFHEAHCRFMLSV 120

Query: 121 ASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSL 180
           ASRCVPDERTCNVLIARLLDY+SPYCTLRLLVCLFDAKP FVPSIVNYNRLIDQF  FSL
Sbjct: 121 ASRCVPDERTCNVLIARLLDYQSPYCTLRLLVCLFDAKPGFVPSIVNYNRLIDQFSKFSL 180

Query: 181 PNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           P+VAHRVLFDMKS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 PDVAHRVLFDMKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAED 300
           XXXXXX KRDFETGKA IC LWE M GE D SVN+AAF+HLVDSLCL GSFHE+F+IAED
Sbjct: 241 XXXXXXXKRDFETGKAFICKLWEEMNGETDPSVNSAAFSHLVDSLCLAGSFHELFSIAED 300

Query: 301 MPQGQSVPE 306
           MPQGQSVPE
Sbjct: 301 MPQGQSVPE 309

[Close]
BLAST of CsGy1G004200 vs. TAIR10
Match: AT3G18020.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 189.1 bits (479), Expect = 8.9e-48
Identity = 155/255 (60.78%), Postives = 187/255 (73.33%), Query Frame = 0 

Query: 49  SVADVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEA 108
           SV D +YW ++IH +C   RN DEAL++LD L L GY+   LNL+SVIH LCDA RF EA
Sbjct: 50  SVTDRAYWRRRIHSICAVRRNPDEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEA 109

Query: 109 HCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLI 168
           H RF+L +AS  +PDERTCNV+IARLL  RSP  TL ++  L   K EFVPS+ NYNRL+
Sbjct: 110 HRRFLLFLASGFIPDERTCNVIIARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLM 169

Query: 169 DQFCSFSLPNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 228
           +Q C+      AH+++FDM++RG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 170 NQLCTIYRVIDAHKLVFDMRNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 229

Query: 229 XXXXXXXXXXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFH 288
           XXXXXXXXXXXXXX               WE MK E D+S+  AAFA+LVDS+C  G F+
Sbjct: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEYMKNETDTSMKAAAFANLVDSMCREGYFN 289

Query: 289 EVFTIAEDMPQGQSV 304
           ++F IAE+M   +SV
Sbjct: 290 DIFEIAENMSLCESV 304

[Close]
BLAST of CsGy1G004200 vs. Swiss-Prot
Match: sp|Q9LSK8|PP240_ARATH (Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX=3702 GN=At3g18020 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-46
Identity = 155/255 (60.78%), Postives = 187/255 (73.33%), Query Frame = 0 

Query: 49  SVADVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEA 108
           SV D +YW ++IH +C   RN DEAL++LD L L GY+   LNL+SVIH LCDA RF EA
Sbjct: 50  SVTDRAYWRRRIHSICAVRRNPDEALRILDGLCLRGYRPDSLNLSSVIHSLCDAGRFDEA 109

Query: 109 HCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLI 168
           H RF+L +AS  +PDERTCNV+IARLL  RSP  TL ++  L   K EFVPS+ NYNRL+
Sbjct: 110 HRRFLLFLASGFIPDERTCNVIIARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLM 169

Query: 169 DQFCSFSLPNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 228
           +Q C+      AH+++FDM++RG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 170 NQLCTIYRVIDAHKLVFDMRNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 229

Query: 229 XXXXXXXXXXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFH 288
           XXXXXXXXXXXXXX               WE MK E D+S+  AAFA+LVDS+C  G F+
Sbjct: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEYMKNETDTSMKAAAFANLVDSMCREGYFN 289

Query: 289 EVFTIAEDMPQGQSV 304
           ++F IAE+M   +SV
Sbjct: 290 DIFEIAENMSLCESV 304

[Close]
BLAST of CsGy1G004200 vs. TrEMBL
Match: tr|A0A0A0LV25|A0A0A0LV25_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025030 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 2.8e-141
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 

Query: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60
           MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI
Sbjct: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60

Query: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120
           HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC
Sbjct: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120

Query: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180
           VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA
Sbjct: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180

Query: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300
           XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG
Sbjct: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300

Query: 301 QSVPE 306
           QSVPE
Sbjct: 301 QSVPE 305

[Close]
BLAST of CsGy1G004200 vs. TrEMBL
Match: tr|A0A1S3BWE8|A0A1S3BWE8_CUCME (pentatricopeptide repeat-containing protein At3g18020 OS=Cucumis melo OX=3656 GN=LOC103494179 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.7e-125
Identity = 280/305 (91.80%), Postives = 286/305 (93.77%), Query Frame = 0 

Query: 1   MFRAAHRSLSIKIVSITPSISILFTRTANFQRLHPENGSDSREWAPEESVADVSYWTKKI 60
           MFRAAHRSLSIKI+SITPSISILFTRTANF RL  ENGSD R+WAPEESVADVSYWTKKI
Sbjct: 1   MFRAAHRSLSIKILSITPSISILFTRTANFPRLQLENGSDGRQWAPEESVADVSYWTKKI 60

Query: 61  HGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFMLSIASRC 120
           HGLCTKDRNVDEAL+L+DALRLHGYQFHPLNLAS+IHGLCDAHRFHEAHCRFMLSIASRC
Sbjct: 61  HGLCTKDRNVDEALRLVDALRLHGYQFHPLNLASIIHGLCDAHRFHEAHCRFMLSIASRC 120

Query: 121 VPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180
           VPDERTCNVLIARLL YRSPYCTLRLL CLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA
Sbjct: 121 VPDERTCNVLIARLLHYRSPYCTLRLLACLFDAKPEFVPSIVNYNRLIDQFCSFSLPNVA 180

Query: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 HRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300
           XX           IC LWERM GE+DSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG
Sbjct: 241 XXXXXXXXXXXXXICKLWERMTGEMDSSVNNAAFAHLVDSLCLVGSFHEVFTIAEDMPQG 300

Query: 301 QSVPE 306
           QSVPE
Sbjct: 301 QSVPE 305

[Close]
BLAST of CsGy1G004200 vs. TrEMBL
Match: tr|A0A2C9VLQ6|A0A2C9VLQ6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G007500 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 188/257 (73.15%), Postives = 215/257 (83.66%), Query Frame = 0 

Query: 49  SVADVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEA 108
           S+   SYWT+KIH LCT+ R VD+AL LLD LRL GY+   LNL+S+IHGLCDA RF EA
Sbjct: 44  SITSRSYWTRKIHNLCTQYRKVDQALALLDHLRLRGYRPDSLNLSSIIHGLCDAKRFQEA 103

Query: 109 HCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLI 168
           + RF+LSI+S C+PDERTCNVLIARLLD + P+ TL  L  LFD KPEFVPS++NYNRLI
Sbjct: 104 YHRFVLSISSHCIPDERTCNVLIARLLDSQCPHSTLHALHRLFDVKPEFVPSVINYNRLI 163

Query: 169 DQFCSFSLPNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 228
            Q+C  SLPNVAHR+LFDM SRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 164 YQYCEVSLPNVAHRLLFDMISRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 223

Query: 229 XXXXXXXXXXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFH 288
           XXXXXXXXXXXXXX +RD E GK L+C LWE MK E D SVN+AAF++++DSLC  G F+
Sbjct: 224 XXXXXXXXXXXXXXXQRDAERGKELMCGLWETMKDEEDHSVNSAAFSNIIDSLCREGFFN 283

Query: 289 EVFTIAEDMPQGQSVPE 306
           EVF IAEDMPQG++V E
Sbjct: 284 EVFKIAEDMPQGKNVNE 300

[Close]
BLAST of CsGy1G004200 vs. TrEMBL
Match: tr|F6HXK7|F6HXK7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00230 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-67
Identity = 183/252 (72.62%), Postives = 210/252 (83.33%), Query Frame = 0 

Query: 54  SYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDAHRFHEAHCRFM 113
           ++W++KIH LCT+DRNVDEAL+LLD LRL GY+   LNL+S+IH LCDA+RF EAH R +
Sbjct: 55  AFWSRKIHNLCTRDRNVDEALRLLDLLRLRGYRPDSLNLSSIIHALCDANRFSEAHHRLL 114

Query: 114 LSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIVNYNRLIDQFCS 173
           LS AS CVPD+RTCNVLIARLLD R+P+ TL +   L  A+PEFVPS++NYNRLI Q CS
Sbjct: 115 LSFASHCVPDQRTCNVLIARLLDSRTPHATLHVFRGLIAARPEFVPSLINYNRLIHQLCS 174

Query: 174 FSLPNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 233
           FS PN AH + FDM+SRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 175 FSQPNEAHGLFFDMRSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 234

Query: 234 XXXXXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSLCLVGSFHEVFTI 293
           XXXXXXXX  KRD E G+ L+C LW++M  E D SVNNAAFA+L+DSLC  G F EVF I
Sbjct: 235 XXXXXXXXLCKRDVERGRELMCKLWQKMMDENDPSVNNAAFANLIDSLCKEGFFLEVFRI 294

Query: 294 AEDMPQGQSVPE 306
           AEDMPQG+SV E
Sbjct: 295 AEDMPQGKSVSE 306

[Close]
BLAST of CsGy1G004200 vs. TrEMBL
Match: tr|A0A2P4K2I2|A0A2P4K2I2_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_75026 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.0e-66
Identity = 167/264 (63.26%), Postives = 192/264 (72.73%), Query Frame = 0 

Query: 46  PEESVA---DVSYWTKKIHGLCTKDRNVDEALQLLDALRLHGYQFHPLNLASVIHGLCDA 105
           PE  ++   + SYWTKKIH LC KDRNVDEAL+LLD L L GYQ   LN+ ++IH LC +
Sbjct: 61  PEHDISITNNTSYWTKKIHRLCAKDRNVDEALRLLDRLSLRGYQPDSLNINTIIHALCHS 120

Query: 106 HRFHEAHCRFMLSIASRCVPDERTCNVLIARLLDYRSPYCTLRLLVCLFDAKPEFVPSIV 165
           HRF EAH R +L I+S CVPDERTCNVLIARLLD R+PY TL ++  L   KPEFVPS+ 
Sbjct: 121 HRFSEAHHRLLLFISSHCVPDERTCNVLIARLLDSRTPYTTLHVIHRLIHVKPEFVPSLP 180

Query: 166 NYNRLIDQFCSFSL-PNVAHRVLFDMKSRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
           NYNRL++QFCS  L P+ AHR+ FDMKSRGH                     XXXXXXXX
Sbjct: 181 NYNRLMNQFCSLQLRPDEAHRLFFDMKSRGHCPNVVSYTTLINGYCRIGELGXXXXXXXX 240

Query: 226 XXXXXXXXXXXXXXXXXXXXXYKRDFETGKALICNLWERMKGELDSSVNNAAFAHLVDSL 285
           XXXXXXXXXXXXXXXXXXXXX  RD E G+ L+C LWE++  E D SV NAAFA+LVDSL
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXRDIERGRELMCKLWEKVSDEKDLSVRNAAFANLVDSL 300

Query: 286 CLVGSFHEVFTIAEDMPQGQSVPE 306
           C  G F+EVFTIAEDMPQG+SV E
Sbjct: 301 CREGFFNEVFTIAEDMPQGKSVCE 324

The following BLAST results are available for this feature:
BLAST of CsGy1G004200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649150.14.3e-141100.00PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativu... [more]
XP_008453476.12.5e-12591.80PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] ... [more]
XP_022921380.18.2e-11686.08pentatricopeptide repeat-containing protein At3g18020 [Cucurbita moschata][more]
XP_022988488.18.2e-11685.11pentatricopeptide repeat-containing protein At3g18020 [Cucurbita maxima][more]
XP_023515599.11.8e-11585.76pentatricopeptide repeat-containing protein At3g18020 [Cucurbita pepo subsp. pep... [more]
BLAST of CsGy1G004200 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18020.18.9e-4860.78Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CsGy1G004200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LSK8|PP240_ARATH1.6e-4660.78Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX... [more]
BLAST of CsGy1G004200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LV25|A0A0A0LV25_CUCSA2.8e-141100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025030 PE=4 SV=1[more]
tr|A0A1S3BWE8|A0A1S3BWE8_CUCME1.7e-12591.80pentatricopeptide repeat-containing protein At3g18020 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2C9VLQ6|A0A2C9VLQ6_MANES1.1e-6873.15Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G007500 PE=4 SV=... [more]
tr|F6HXK7|F6HXK7_VITVI3.6e-6772.62Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00230 PE=4 SV=... [more]
tr|A0A2P4K2I2|A0A2P4K2I2_QUESU3.0e-6663.26Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_7... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G004200.1CsGy1G004200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 144..252
e-value: 3.5E-23
score: 83.8
coord: 37..140
e-value: 6.4E-9
score: 37.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 412..506
e-value: 8.1E-21
score: 76.3
coord: 507..581
e-value: 7.3E-16
score: 60.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 583..674
e-value: 3.4E-18
score: 68.0
coord: 253..411
e-value: 3.0E-23
score: 84.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 194..241
e-value: 1.1E-16
score: 60.6
coord: 621..664
e-value: 9.1E-10
score: 38.5
coord: 516..565
e-value: 1.9E-13
score: 50.2
coord: 444..492
e-value: 1.3E-12
score: 47.6
coord: 341..388
e-value: 3.9E-8
score: 33.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 163..191
e-value: 0.14
score: 12.4
coord: 590..619
e-value: 0.17
score: 12.1
coord: 308..337
e-value: 0.011
score: 15.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 164..196
e-value: 9.9E-4
score: 17.1
coord: 519..552
e-value: 2.4E-4
score: 19.1
coord: 624..658
e-value: 1.3E-6
score: 26.1
coord: 590..622
e-value: 4.5E-5
score: 21.4
coord: 308..339
e-value: 1.6E-4
score: 19.6
coord: 197..230
e-value: 1.3E-7
score: 29.4
coord: 447..481
e-value: 2.0E-7
score: 28.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 7.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..260
score: 6.434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 8.638
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 7.114
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 552..582
score: 7.684
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 517..551
score: 9.876
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..87
score: 8.451
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 88..122
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 622..656
score: 11.246
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 160..194
score: 9.032
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 481..516
score: 10.315
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 587..621
score: 10.885
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 195..229
score: 11.674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..405
score: 7.969
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 35..672
NoneNo IPR availablePANTHERPTHR24015:SF310SUBFAMILY NOT NAMEDcoord: 35..672

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G004200Cla018928Watermelon (97103) v1cgybwmB095
CsGy1G004200Csa1G025030Cucumber (Chinese Long) v2cgybcuB001
CsGy1G004200MELO3C017354Melon (DHL92) v3.5.1cgybmeB050
CsGy1G004200ClCG06G014360Watermelon (Charleston Gray)cgybwcgB079
CsGy1G004200CSPI01G04300Wild cucumber (PI 183967)cgybcpiB001
CsGy1G004200CmaCh10G003270Cucurbita maxima (Rimu)cgybcmaB006
CsGy1G004200CmaCh11G003080Cucurbita maxima (Rimu)cgybcmaB029
CsGy1G004200CmoCh11G003150Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G004200CmoCh10G003520Cucurbita moschata (Rifu)cgybcmoB007
CsGy1G004200Lsi06G012880Bottle gourd (USVL1VR-Ls)cgyblsiB068
CsGy1G004200Cp4.1LG04g13690Cucurbita pepo (Zucchini)cgybcpeB127
CsGy1G004200Cp4.1LG18g06760Cucurbita pepo (Zucchini)cgybcpeB055
CsGy1G004200MELO3C017354.2Melon (DHL92) v3.6.1cgybmedB044
CsGy1G004200CsaV3_1G004300Cucumber (Chinese Long) v3cgybcucB002
CsGy1G004200Cla97C06G123820Watermelon (97103) v2cgybwmbB077
CsGy1G004200Bhi02G000097Wax gourdcgybwgoB075
CsGy1G004200Carg15176Silver-seed gourdcarcgybB0778
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G004200Wild cucumber (PI 183967)cgybcpiB003
CsGy1G004200Silver-seed gourdcarcgybB0394
CsGy1G004200Silver-seed gourdcarcgybB0594
CsGy1G004200Cucumber (Chinese Long) v3cgybcucB004
CsGy1G004200Watermelon (97103) v2cgybwmbB054
CsGy1G004200Wax gourdcgybwgoB036
CsGy1G004200Cucumber (Gy14) v2cgybcgybB002
CsGy1G004200Cucurbita maxima (Rimu)cgybcmaB077
CsGy1G004200Cucurbita maxima (Rimu)cgybcmaB088
CsGy1G004200Cucurbita moschata (Rifu)cgybcmoB071
CsGy1G004200Cucurbita moschata (Rifu)cgybcmoB086
CsGy1G004200Cucurbita pepo (Zucchini)cgybcpeB020
CsGy1G004200Cucurbita pepo (Zucchini)cgybcpeB073
CsGy1G004200Cucumber (Chinese Long) v2cgybcuB004
CsGy1G004200Bottle gourd (USVL1VR-Ls)cgyblsiB021
CsGy1G004200Melon (DHL92) v3.5.1cgybmeB026
CsGy1G004200Melon (DHL92) v3.6.1cgybmedB025
CsGy1G004200Watermelon (Charleston Gray)cgybwcgB054
CsGy1G004200Watermelon (97103) v1cgybwmB065