Cp4.1LG20g08820 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g08820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	THO complex subunit 4
Location	Cp4.1LG20 : 7058613 .. 7063185 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAATGACCAGATAGCTCTAATGGGTTCCCTTCACTACTCCCGTGAAGATGGTCTAAACGGTTCAGAAATACTCATCTTACTACATAAAACATTTACTTAGCCTACATTTAGATTCCGGTCTACTCAAACTCGGCCTAGTTCATAACCAAAATTTAGATTTGGATTTGGCATAAGGTTCTTGAGTTGTTAGATTGTTGCTAAATAATTTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTTAGCATATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGATGAATCTTACTACCATCGCCATCCTCTAGCTCTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCTTCTTCTACTACTACTTCTACCAGTTTCTCGTTCTTTTCAAAACGGACTTCGGGTATTTTGTTTTTAATGTTCTGAAAAACATTGGGGGTTTAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGAGGGCTTGAACATGAGAATTTTTTTTGTATGTATTGCTAAGATTTTATTGAAATTGTATATGCAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGTATGTTTAAAGTGTGAAGAACACAAGAGCTTTTGTTTCTTTTTAGCAATATTCTGGCTTTGGTTTGAGTTTTTGTTCTTTGTAGGGAACAGCAGAGATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCATGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGGTATACATTTTCTCTCTTCACTTGTCCTTATTTCTGATTTTTCCATTTGCGTTTACAATTGCAATCATCTATTAACGCGGCTAATGGTATGTGTTCAGAAGTAGATATGGATTTTATTTGCTTTATAATACTTTTGTAAGCCCATGATTGAAGTAATTGTTTTTAGAGTTGTATTGGATTTTGACGTAGATTTTTCAACATTTTCTTGTTATTCTGACTTAGTTCATAGTAAAATCATTTTTCATTGCTTTTTGACATGTCCGCTGAAAGTTTTGAAAGGATTAAATTGAACATAAAAATATTTAATTTCAACAACTCGTTAAGATATGTGTACTTAAAGGGAGGTATTTCTCGTTTGACACTATGGACATAGTAAATGGTAAACCATATGATGTTAATCGAAGAAAAATTGTTACACTTGTATGAGAAACTTAGGGATTATATATATCTAAATATCTATCTATCTATATATATATTATGATAAGTAGCCGAACCTTCCTTGAGAAAACTTGAAAGAATATTAGGGCATATAAAAGACTCACTAACGGAGGCAAAATTGTATCCATAATTTATTGTCAATTTTGTTTATGATGACAATGTGTTTCTAGCAGCAATTGTATTCAACAACTTTTATTTCTCAAATTTGCGTTTGATCGCATATAAAATTAGCTGCTTCCTAATGTTTATTAATATTTTTTAACAACTGTGGGTATCTGACCAAGTTTTCACACCTTGGCTAGTATTGTCAAAAAACCACATGAACCTACTTCATTTGGTGTTGGAATGCTGGGTGTTATTTTCATTGGGTATTTGAGTGTACAAATTGTCTATTTGACCACTAACTGAATTTGTTGTAGGTTAAAGCTTACAAGATTTCTATTCAAGTTCTCCAATAAACAAACGACATTAAGGGATCCAGTTCTGCCACATTTTATGCAAGAAAAAACTTAATATGGGTTCCTTCTTTTGCGCGTCAATCCTTTTAGAAAAGAGTCTAGGTAATGATAACTTGGATAGTTTAATGACCAAGATTATTGAATTGTAGATGAAAGATTCCAAGTTGCAAGAAGTTTGTGTGTCATTGTTGAGGTGTATGTTATTATGTGGAGCCTGTGGAGCCTTTGGGGAGGGAGTAATGGCAGGCTCATTAGAGGGCTTGAGTGGTCTTTGGTTTTGACCCCTTGTTAGGTTCATCATCTCTTTGTGGGTCCAGAATCAGCTTATGTTTTGATCATATGATTCTGTAAGTTTTGATATTTAAGCTTTTCCATATTGATGATGAATTATATGAAAAGGGTAAAATGTTTACGAAGCCTGCCTTATTAACATTTATCACACAGATATTTTAATTGTGCGATGTTGATAGAAGCCGTTCTTTCTTTACTTTGGTACCCGTATGACTTCTGCCTGCCTCTGAACAGTTCTGGTAGTTATTTGTGTACATGATCATGCATTACGTTGTTCTTTTTATGCTTCAGTTGGTGCTTAAGTATGAGGCTGATAATTATGTTTTATGTATTTTAATTGAAATTGCTGACATCTAGACTTTTGATCTGATTTTGATTGCTATTATTGATTCTCTTAATCAGCATGCACTTAATAAATTTTCATTTGATTTTAACAGTGGACATGTACTGGGCCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAATATCATGAAGAAGCCATGCAGATCAATTAAATCATTTGGTGTGATTTCCTGGGGCTTGATATTCCCAACTTCGTTAGGTGCTTGATGATAAATGTGATAAGGATACCATTTTCTATTTTGCGAGTCATATCATGAAGCCCTGACCTTGAGAGAACCACTAGACCTTGCTAGGATGTGGAGTTTGGGCTTCAATTGTTATTTGTTGCAGTAAACTACAATGAGGTGTTATATATGCTTGAATCTGTAATCTCCCGTTACTTATCTGTTTCTTAATCTTCTCCAATCCTATTTATTTTCCATGAAAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCGACACGGAAGGATTTGGGCGCTTGACATGGGAAGTATTGGTTATAACATAATCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGGTACACCGTTTCTAAATCATAATATTTCCTTGATGGAATGATAGATATAGCCGAGAATCTATTCTGAATATGTTGATTATTGGGTTCTGACTGCAGAATTTCTACTTATATTGCTTTGCAGCGTTTGGTTTTATGAATTAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGAAGGAAGGGGTGTGGAGATGATTACCAAGTAAGTGTTCAAGGCCACCGCTAGCAGATACTGTTCGCTTTAACCTGTTACGTATCCTCGTCAGCCTCACAGTTTTAAAACGCATCTACTAGAAAAATGGGTTTTTCACACCCTTATGAGGAATGTTTCGTTCTCCTCTCCAACCGACGTGGGATCTCACACAATTGGTATGCAGTTAGAATTCAACAACACTTACATTTATTTCAGTTTATTTCAGTATTGTGTATGCCTTTTACTATCATGTGGTTGTAGTAATGACTATTATAGGCTGCAGTCTCGTTTCTTCAGCATATTTTGTTTGAAAATATTCCAGAATTTTGCATTCAATAATTAGAAGACCAGGCATATACCATGCAATAATGTTGAGTTTCTTCTGTATCTTAAGAAAGCCAAAAAAAGTAGGGGAATTATGCTACTCTGTCAAGTGTCATTTGAACTCCTAGCGTAGAAACTCGATTGCAGTTGGTCGAAGTGCACCGACATATCTGAGATTCAATTTAGATTTTACAAAACTGGTCCATTTTAGTTAGTTTTTGCTTTCTATAACATAGTTCAGATTTGTATTTTTGCTTCTATATTATGGTTATCATTCAGATTTCTACCTTGTCACTTATGTTTGAAGCCTTTTGGAATTCAATCTTAGATTAGTTTGTTTGTAGTTGATGAAGAAATGGAGTTGATGATCGATCATTACTAGGGTCATAATCGATTGAAAGATCAAGTCGACTTTTGTTTGCCATATCAATCATGGAGGTAAAAAATGATTTTACTCCCGGACCTTTTGCAATAGGTTTTGATTTTAGTATCAATAGTAAGGTGGAAATATTTGAATACAAGCTCATATTGCATATGAAAATTGGAAGGAAAATGTTCATGCCAAATGAAGCAGCTTT

mRNA sequence

AGCAAATGACCAGATAGCTCTAATGGGTTCCCTTCACTACTCCCGTGAAGATGGTCTAAACGGTTCAGAAATACTCATCTTACTACATAAAACATTTACTTAGCCTACATTTAGATTCCGGTCTACTCAAACTCGGCCTAGTTCATAACCAAAATTTAGATTTGGATTTGGCATAAGGTTCTTGAGTTGTTAGATTGTTGCTAAATAATTTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTTAGCATATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAGATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCATGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAATATCATGAAGAAGCCATGCAGATCAATTAAATCATTTGGTGTGATTTCCTGGGGCTTGATATTCCCAACTTCGTTAGGTGCTTGATGATAAATGTGATAAGGATACCATTTTCTATTTTGCGAGTCATATCATGAAGCCCTGACCTTGAGAGAACCACTAGACCTTGCTAGGATGTGGAGTTTGGGCTTCAATTGTTATTTGTTGCAGTAAACTACAATGAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCGACACGGAAGGATTTGGGCGCTTGACATGGGAAGTATTGGTTATAACATAATCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGCGTTTGGTTTTATGAATTAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGAAGGAAGGGGTGTGGAGATGATTACCAAGTAAGTGTTCAAGGCCACCGCTAGCAGATACTGTTCGCTTTAACCTGTTACGTATCCTCGTCAGCCTCACAGTTTTAAAACGCATCTACTAGAAAAATGGGTTTTTCACACCCTTATGAGGAATGTTTCGTTCTCCTCTCCAACCGACGTGGGATCTCACACAATTGGTATGCAGTTAGAATTCAACAACACTTACATTTATTTCAGTTTATTTCAGTATTGTGTATGCCTTTTACTATCATGTGGTTGTAGTAATGACTATTATAGGCTGCAGTCTCGTTTCTTCAGCATATTTTGTTTGAAAATATTCCAGAATTTTGCATTCAATAATTAGAAGACCAGGCATATACCATGCAATAATGTTGAGTTTCTTCTGTATCTTAAGAAAGCCAAAAAAAGTAGGGGAATTATGCTACTCTGTCAAGTGTCATTTGAACTCCTAGCGTAGAAACTCGATTGCAGTTGGTCGAAGTGCACCGACATATCTGAGATTCAATTTAGATTTTACAAAACTGGTCCATTTTAGTTAGTTTTTGCTTTCTATAACATAGTTCAGATTTGTATTTTTGCTTCTATATTATGGTTATCATTCAGATTTCTACCTTGTCACTTATGTTTGAAGCCTTTTGGAATTCAATCTTAGATTAGTTTGTTTGTAGTTGATGAAGAAATGGAGTTGATGATCGATCATTACTAGGGTCATAATCGATTGAAAGATCAAGTCGACTTTTGTTTGCCATATCAATCATGGAGGAAAATGTTCATGCCAAATGAAGCAGCTTT

Coding sequence (CDS)

ATGGCAGAGCCTCTCGATATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAGATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCATGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAATATCATGAAGAAGCCATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of Cp4.1LG20g08820 vs. Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.0e-64
Identity = 150/248 (60.48%), Postives = 184/248 (74.19%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNRGGGRGRGPGRGGRGRGSSRGRG--EKLSAEDLDADLEKY 240
           N GN NG  +R G    G+ RGGGRG G GRGG GRG   G+G  EK+SAEDLDADL+KY
Sbjct: 181 N-GNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 240

Query: 241 HEEAMQIN 242
           H   M+ N
Sbjct: 241 HSGDMETN 244

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BLAST of Cp4.1LG20g08820 vs. Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 163/290 (56.21%), Postives = 188/290 (64.83%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSTA----QAPETAWSHDMFVDHG---AAYPSQPARA----SAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIMTPAVPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of Cp4.1LG20g08820 vs. Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.3e-39
Identity = 116/259 (44.79%), Postives = 150/259 (57.92%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKS-----GSSNFRGRGGASSGPGPSRR-----------FRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYG 120
                 G NR APYS  +     W HD+F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFG------AGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+ M
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGTNIMTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGP--GRGGRGRGSSR 235
            +++V + I T   PA +     N  G  R   VLG   GGG  RG   G  GRGRG+ R
Sbjct: 181 NIQLVTSQIDTQRRPAQSV----NRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGR 240

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BLAST of Cp4.1LG20g08820 vs. Swiss-Prot
Match: THO4D_ARATH (THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-37
Identity = 120/291 (41.24%), Postives = 157/291 (53.95%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRAAPYST 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR     +N      T
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARR-GPLAVNARPSSFT 60

Query: 61  AQAP-----ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFS 120
              P        W   +F D   A     A AS +E GT+L+V+NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMT 180
           E+G+++RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+ M+LEI+G N  +
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PA-VPASANGNFGNPNG-------FRRGGHVLGRNRGGGRGRGP---------------- 239
            A +    N N    NG        ++GG   GR RGG  GRGP                
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

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BLAST of Cp4.1LG20g08820 vs. Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3)

HSP 1 Score: 152.9 bits (385), Expect = 4.4e-36
Identity = 110/259 (42.47%), Postives = 146/259 (56.37%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKS----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G + +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  --------GLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLD 120
                   G NR APYS  +     W HD+F D G          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF-DSGFG------GGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 HMKLEIVGTNIMTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSR 235
            M +++V + I T   PA +    G       GG   G  R G RG   G  GRGRG+ R
Sbjct: 181 PMNIQLVTSQIDTQRRPAQSINRGGMTRNRGSGGFGGGGTRRGTRG---GSRGRGRGTGR 240

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BLAST of Cp4.1LG20g08820 vs. TrEMBL
Match: A0A0A0LUQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.1e-113
Identity = 221/250 (88.40%), Postives = 229/250 (91.60%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNI+TPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGR--------GSSRGRGEKLSAEDLDADLE 240
           NPNGF RGG  +GRNRGGGRGRGPGRG GRGR        GS RG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 242
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of Cp4.1LG20g08820 vs. TrEMBL
Match: A0A067LAK2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.3e-87
Identity = 183/249 (73.49%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M+  LDMSLDDIIK+NKK GS N RGRG A SGPGP+RRF NR  NRAAPYSTA+APET 
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRA-SGPGPTRRFTNRVANRAAPYSTAKAPETT 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W HDMF D G  Y  Q  RASAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+I+Y
Sbjct: 61  WQHDMFTDQGMGYAGQGGRASAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           D+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTNI TPA P++ANG FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPSAANGTFG 180

Query: 181 NPNGFRRGGH----VLGRNR---GGGRGRGPGRG-GRGRGSSRGRGEKLSAEDLDADLEK 240
           + N   RGG      +GR R   GGGRG G GRG GRG G   GRGEK+SAEDLDADLEK
Sbjct: 181 SSNAVSRGGQGRGGAVGRQRGGSGGGRGFGRGRGRGRGGGGGGGRGEKVSAEDLDADLEK 240

Query: 241 YHEEAMQIN 242
           YH EAMQ N
Sbjct: 241 YHSEAMQTN 248

[Close]

BLAST of Cp4.1LG20g08820 vs. TrEMBL
Match: A0A061H038_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 170/242 (70.25%), Postives = 198/242 (81.82%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M+  L+MSLDD+IK N+KSGS N RGRG   SGPGP+RRF NRG NR+ PY+ A+APET 
Sbjct: 1   MSSALEMSLDDLIKRNRKSGSGNSRGRG-RGSGPGPARRFPNRGANRSGPYTAAKAPETT 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W HDM+ D GAA+  Q  RASAIETGTKLY+SNLDYGVSN+DIKELF+EVGDLKR++I+Y
Sbjct: 61  WQHDMYSDKGAAFQGQAGRASAIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRFTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           D+SGRSKGTAE+VFSR+ DA+AA+KRYNNVQLDGK MK+EIVGTN+ TP  P++ NG FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDAMAAVKRYNNVQLDGKPMKIEIVGTNVATPGAPSAGNGAFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGRGSSRGRGEKLSAEDLDADLEKYHEEAMQ 240
           N NG  RGGH  G   G  RG G GRG GRGRG  +GRGEK+SAEDLDA+LEKYH EAMQ
Sbjct: 181 NSNGAPRGGHGRGGGFGKQRGGGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSEAMQ 240

Query: 241 IN 242
            N
Sbjct: 241 TN 241

[Close]

BLAST of Cp4.1LG20g08820 vs. TrEMBL
Match: W9QZL4_9ROSA (RNA and export factor-binding protein 2 OS=Morus notabilis GN=L484_001844 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.0e-85
Identity = 177/249 (71.08%), Postives = 202/249 (81.12%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTA-QAPET 60
           M++PL MSLDDIIK NKK+GS N RGRG  S GPGP+RR  NR  NRAAPY+ A +APET
Sbjct: 1   MSDPLSMSLDDIIKTNKKTGSGNPRGRGRLSGGPGPARRVPNRAPNRAAPYAAAPKAPET 60

Query: 61  AWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSIN 120
            W HDM++D G A+ +Q  RASAI+TGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+I+
Sbjct: 61  TWQHDMYMDQGTAFAAQAGRASAIQTGTKLYISNLEYGVSNEDIKELFSEVGDLKRYAIH 120

Query: 121 YDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAV-PASANGN 180
           YD+SGRSKGTAE+VFSR+ADA+AA+KRYNNVQLDGK MK+EIVGTN+ TPA  P  ANG+
Sbjct: 121 YDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNVATPAAPPPPANGS 180

Query: 181 FGNPNGFRRGGH-----VLGRNR-GGGRGRGPGRGGRGRGSSRGRGEKLSAEDLDADLEK 240
           FGN NG  RGG        GR R GGG GRGP R GRGRG  RG GEK+SA+DLDADLEK
Sbjct: 181 FGNSNGLPRGGQGRGGGAFGRPRGGGGGGRGP-RRGRGRGQGRGTGEKISADDLDADLEK 240

Query: 241 YHEEAMQIN 242
           YH EAMQ N
Sbjct: 241 YHAEAMQEN 248

[Close]

BLAST of Cp4.1LG20g08820 vs. TrEMBL
Match: M5WJJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010358mg PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.0e-84
Identity = 180/253 (71.15%), Postives = 204/253 (80.63%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M +PL+MSLDD+IK +KKSGS N RGRG AS GPGP+RR  NR  NR  PY+ A+APETA
Sbjct: 1   MQDPLNMSLDDLIKTSKKSGSGNARGRGRAS-GPGPARRLPNRAANRTTPYAAAKAPETA 60

Query: 61  WSHDMFVDHGAA-YPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSIN 120
           W HD++ D GAA +P+Q  RASAIETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY ++
Sbjct: 61  WQHDLYTDQGAAAFPAQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGVH 120

Query: 121 YDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMT----PAVPASA 180
           YD+SGRSKGTAE+VFSR+ DA+AA+KRYNNVQLDGK MK+EIVGTNI T    P +P +A
Sbjct: 121 YDRSGRSKGTAEVVFSRRPDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGGPPTLPPAA 180

Query: 181 NGNFGNPNGFRRGGH----VLGRNRGGGRGRGPGRGGRGRGS----SRGR-GEKLSAEDL 240
           NGNFGN NG  RGG       GR RGGG GRGP RGGRGRGS     RGR GEK+SAEDL
Sbjct: 181 NGNFGNSNGVPRGGQSRGGAFGRIRGGG-GRGPRRGGRGRGSGNGGGRGRGGEKVSAEDL 240

[Close]

BLAST of Cp4.1LG20g08820 vs. TAIR10
Match: AT5G59950.5 (AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 248.4 bits (633), Expect = 4.4e-66
Identity = 151/249 (60.64%), Postives = 185/249 (74.30%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRG-GASSGPGPSRRFR-NRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS       RG G+ SGPGP+RR   NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVL-GRNRGGGRGRGPGRGGRGRGSSRGRG--EKLSAEDLDADLEK 240
           N GN NG  + RGG    G+ RGGGRG G GRGG GRG   G+G  EK+SAEDLDADL+K
Sbjct: 181 N-GNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGRGRRPGKGPAEKISAEDLDADLDK 240

Query: 241 YHEEAMQIN 242
           YH   M+ N
Sbjct: 241 YHSGDMETN 245

[Close]

BLAST of Cp4.1LG20g08820 vs. TAIR10
Match: AT5G02530.1 (AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 244.2 bits (622), Expect = 8.2e-65
Identity = 163/290 (56.21%), Postives = 188/290 (64.83%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKK----------SGSSNFRGRGGASSGPGPSRRFRNRGLNRAAP 60
           M+  LDMSLDDIIK+N+K           G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSTA----QAPETAWSHDMFVDHG---AAYPSQPARA----SAIETGTKLYVSNLDYGVS 120
           YS      QA +  W +D+F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIMTPAVPASA-------------------NGNF-GNPNGFRRG---GHVLGRNR 240
           EIVGTN+  PA+P  A                   NGNF GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Cp4.1LG20g08820 vs. TAIR10
Match: AT5G37720.1 (AT5G37720.1 ALWAYS EARLY 4)

HSP 1 Score: 158.3 bits (399), Expect = 5.9e-39
Identity = 120/291 (41.24%), Postives = 157/291 (53.95%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNK--KSGSSNF-----RGRGGASSGPGPSRRFRNRGLNRAAPYST 60
           M+  L+M+LD+I+K  K  +SG         RGRGG   G GP+RR     +N      T
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARR-GPLAVNARPSSFT 60

Query: 61  AQAP-----ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFS 120
              P        W   +F D   A     A AS +E GT+L+V+NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMT 180
           E+G+++RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+ M+LEI+G N  +
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PA-VPASANGNFGNPNG-------FRRGGHVLGRNRGGGRGRGP---------------- 239
            A +    N N    NG        ++GG   GR RGG  GRGP                
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]

BLAST of Cp4.1LG20g08820 vs. TAIR10
Match: AT1G66260.1 (AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35
Identity = 114/300 (38.00%), Postives = 159/300 (53.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSS------------NFRGRGGASSGPGPSRRFRNRGLNRA 60
           M++ L+M+LD+I+K +K   S+            + RGRGG +   G  R     G  R 
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGR---GGGPVRR 60

Query: 61  APYSTAQAPETAWSHDMFVDHGAAYPSQPAR-----------ASAIETGTKLYVSNLDYG 120
            P +    P +++S +       + P Q               S +E GT +Y++NLD G
Sbjct: 61  GPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           V+NEDI+EL++E+G+LKRY+I+YDK+GR  G+AE+V+ R++DA+ A+++YNNV LDG+ M
Sbjct: 121 VTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPM 180

Query: 181 KLEIVGTNIMTPAVPASANGNFGNPNGFRR-----GGHVLGRNRGGGRGRGP-------- 240
           KLEI+G N  T + P +A  N    NG  +     G  V G   G GRG GP        
Sbjct: 181 KLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRRLPLQ 240

Query: 241 ---------GRG---GRGRGSSRGRGEK-----------LSAEDLDADLEKYHEEAMQIN 242
                    GRG   GRGRG+  GRG K            SA DLD DLE YH EAM I+
Sbjct: 241 QNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAMNIS 295

[Close]

BLAST of Cp4.1LG20g08820 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-07
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 81  SAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDK-SGRSKGTAEIVFSRQAD 140
           S   +G ++YV NL +GV +  ++ LFSE G +    + YD+ SGRSKG   + +    +
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 141 ALAAIKRYNNVQLDGKHMKL 160
              AIK  +   LDG+ +++
Sbjct: 258 VQNAIKSLDGADLDGRQIRV 277

[Close]

BLAST of Cp4.1LG20g08820 vs. NCBI nr
Match: gi|659115424|ref|XP_008457549.1| (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 418.3 bits (1074), Expect = 9.0e-114
Identity = 220/245 (89.80%), Postives = 228/245 (93.06%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           DKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGK MKLEIVGTNI+TPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGR----GSSRGRGEKLSAEDLDADLEKYHEE 240
           N NGF RGG  +GRNRGGGRGRGPGRGGRGR    GS RGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 242
           AMQIN
Sbjct: 241 AMQIN 245

[Close]

BLAST of Cp4.1LG20g08820 vs. NCBI nr
Match: gi|778661318|ref|XP_004149042.2| (PREDICTED: THO complex subunit 4A [Cucumis sativus])

HSP 1 Score: 416.0 bits (1068), Expect = 4.5e-113
Identity = 221/250 (88.40%), Postives = 229/250 (91.60%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNI+TPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGR--------GSSRGRGEKLSAEDLDADLE 240
           NPNGF RGG  +GRNRGGGRGRGPGRG GRGR        GS RG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 242
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of Cp4.1LG20g08820 vs. NCBI nr
Match: gi|720013236|ref|XP_010260105.1| (PREDICTED: THO complex subunit 4A [Nelumbo nucifera])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 183/250 (73.20%), Postives = 206/250 (82.40%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTA---QAP 60
           M+  LDM+L+D+IKNNKKSG  NFRGRG   SGPGPSRRF NRG NR APYST    QAP
Sbjct: 1   MSSALDMTLEDLIKNNKKSGGGNFRGRG-RGSGPGPSRRFPNRGANRTAPYSTGKPVQAP 60

Query: 61  ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           ++AW HDMF D  AAYP+Q AR SAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+
Sbjct: 61  DSAWQHDMFTDQAAAYPAQAARTSAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTP-AVPASAN 180
           ++YD+SGRSKGTAE+VFSR+ADALAA+KRYNNVQLDGK MK+E+VGTNI TP AVP +AN
Sbjct: 121 VHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEVVGTNIATPVAVPPAAN 180

Query: 181 GNFGNPNGFRRGGH----VLGRNRGGGRGRGPGRG-GRGRGSSRGRGEKLSAEDLDADLE 240
           G FGNPNG  R G      +GR+RGGG     GRG GRGRG  R RGE++SAEDLDADLE
Sbjct: 181 GGFGNPNGVPRSGQGRGGAMGRSRGGG-----GRGFGRGRGRRRDRGEQISAEDLDADLE 240

Query: 241 KYHEEAMQIN 242
           KYH EAMQIN
Sbjct: 241 KYHSEAMQIN 244

[Close]

BLAST of Cp4.1LG20g08820 vs. NCBI nr
Match: gi|802553469|ref|XP_012064998.1| (PREDICTED: THO complex subunit 4A [Jatropha curcas])

HSP 1 Score: 330.9 bits (847), Expect = 1.9e-87
Identity = 183/249 (73.49%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M+  LDMSLDDIIK+NKK GS N RGRG A SGPGP+RRF NR  NRAAPYSTA+APET 
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRA-SGPGPTRRFTNRVANRAAPYSTAKAPETT 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W HDMF D G  Y  Q  RASAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+I+Y
Sbjct: 61  WQHDMFTDQGMGYAGQGGRASAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180
           D+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTNI TPA P++ANG FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPSAANGTFG 180

Query: 181 NPNGFRRGGH----VLGRNR---GGGRGRGPGRG-GRGRGSSRGRGEKLSAEDLDADLEK 240
           + N   RGG      +GR R   GGGRG G GRG GRG G   GRGEK+SAEDLDADLEK
Sbjct: 181 SSNAVSRGGQGRGGAVGRQRGGSGGGRGFGRGRGRGRGGGGGGGRGEKVSAEDLDADLEK 240

Query: 241 YHEEAMQIN 242
           YH EAMQ N
Sbjct: 241 YHSEAMQTN 248

[Close]

BLAST of Cp4.1LG20g08820 vs. NCBI nr
Match: gi|719991357|ref|XP_010253243.1| (PREDICTED: THO complex subunit 4A-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 328.6 bits (841), Expect = 9.4e-87
Identity = 180/246 (73.17%), Postives = 203/246 (82.52%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS---TAQAP 60
           M+  LDMSLDD+IKNNKKSG SNFRGRG   SGPGP+RR  NRG NR  PYS   + QAP
Sbjct: 1   MSSSLDMSLDDLIKNNKKSGGSNFRGRG-RGSGPGPARRAPNRGANRTTPYSMGKSVQAP 60

Query: 61  ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           ++AW HDMF D  AAYP+Q +RASAIETGTKLY+SNLDYGVSN+DIKELFSEVGDLKRY+
Sbjct: 61  DSAWQHDMFTDQAAAYPAQASRASAIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAV-PASAN 180
           I+YD+SGRSKGTAE+VFSR+ADALAA+KRYNNVQLDGK MK+EIVGTN+ TPAV PA+ N
Sbjct: 121 IHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEIVGTNVTTPAVAPAATN 180

Query: 181 GNFGNPNGFRRGGHVLGRNRGGGRGRGPGRG-GRGRGSSRGRGEKLSAEDLDADLEKYHE 240
           G FGNPN   R     G+ RGG  GR  GRG GRGRG  RGR E+++AEDLDADLEKYH 
Sbjct: 181 GKFGNPNSVPRS----GQGRGGAIGRPRGRGFGRGRGRGRGRAEQITAEDLDADLEKYHS 240

Query: 241 EAMQIN 242
           EAMQIN
Sbjct: 241 EAMQIN 241

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g08820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THO4A_ARATH	1.0e-64	60.48	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	[more]
THO4B_ARATH	1.5e-63	56.21	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]
THOC4_TAEGU	4.3e-39	44.79	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	[more]
THO4D_ARATH	1.1e-37	41.24	THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1	[more]
THOC4_MOUSE	4.4e-36	42.47	THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3	[more]

BLAST of Cp4.1LG20g08820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ3_CUCSA	3.1e-113	88.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G480690 PE=4 SV=1	[more]
A0A067LAK2_JATCU	1.3e-87	73.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1	[more]
A0A061H038_THECC	1.2e-85	70.25	RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1	[more]
W9QZL4_9ROSA	8.0e-85	71.08	RNA and export factor-binding protein 2 OS=Morus notabilis GN=L484_001844 PE=4 S...	[more]
M5WJJ8_PRUPE	4.0e-84	71.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010358mg PE=4 SV=1	[more]

BLAST of Cp4.1LG20g08820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59950.5	4.4e-66	60.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	8.2e-65	56.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.1	5.9e-39	41.24	ALWAYS EARLY 4	[more]
AT1G66260.1	1.0e-35	38.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.7e-07	33.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG20g08820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115424\|ref\|XP_008457549.1\|	9.0e-114	89.80	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
gi\|778661318\|ref\|XP_004149042.2\|	4.5e-113	88.40	PREDICTED: THO complex subunit 4A [Cucumis sativus]	[more]
gi\|720013236\|ref\|XP_010260105.1\|	1.0e-88	73.20	PREDICTED: THO complex subunit 4A [Nelumbo nucifera]	[more]
gi\|802553469\|ref\|XP_012064998.1\|	1.9e-87	73.49	PREDICTED: THO complex subunit 4A [Jatropha curcas]	[more]
gi\|719991357\|ref\|XP_010253243.1\|	9.4e-87	73.17	PREDICTED: THO complex subunit 4A-like isoform X1 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR025715	FoP_C
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g08820.1	Cp4.1LG20g08820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..157 score: 1.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 score: 4.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 87..164 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 76..161 score: 4.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 50..165 score: 1.17
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 187..234 score: 5.
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 170..241 score: 5.2
None	No IPR available	unknown	Coil	Coil	coord: 223..241 scor
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..241 score: 3.1E
None	No IPR available	PANTHER	PTHR19965:SF29	SUBFAMILY NOT NAMED	coord: 1..241 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g08820	Cucsa.213420	Cucumber (Gy14) v1	cgycpeB0589
Cp4.1LG20g08820	CmaCh13G001610	Cucurbita maxima (Rimu)	cmacpeB235
Cp4.1LG20g08820	CmaCh01G005600	Cucurbita maxima (Rimu)	cmacpeB483
Cp4.1LG20g08820	CmoCh01G005860	Cucurbita moschata (Rifu)	cmocpeB441
Cp4.1LG20g08820	CmoCh13G001640	Cucurbita moschata (Rifu)	cmocpeB202
Cp4.1LG20g08820	Cla008288	Watermelon (97103) v1	cpewmB507
Cp4.1LG20g08820	Cla013288	Watermelon (97103) v1	cpewmB525
Cp4.1LG20g08820	Csa1G480690	Cucumber (Chinese Long) v2	cpecuB507
Cp4.1LG20g08820	MELO3C020710	Melon (DHL92) v3.5.1	cpemeB479
Cp4.1LG20g08820	ClCG02G020360	Watermelon (Charleston Gray)	cpewcgB461
Cp4.1LG20g08820	ClCG03G001960	Watermelon (Charleston Gray)	cpewcgB467
Cp4.1LG20g08820	CSPI01G22430	Wild cucumber (PI 183967)	cpecpiB507
Cp4.1LG20g08820	Lsi02G014020	Bottle gourd (USVL1VR-Ls)	cpelsiB422
Cp4.1LG20g08820	MELO3C020710.2	Melon (DHL92) v3.6.1	cpemedB561
Cp4.1LG20g08820	CsaV3_1G033610	Cucumber (Chinese Long) v3	cpecucB0625
Cp4.1LG20g08820	Bhi08G000325	Wax gourd	cpewgoB0636
Cp4.1LG20g08820	CsGy1G022010	Cucumber (Gy14) v2	cgybcpeB071
Cp4.1LG20g08820	Carg21035	Silver-seed gourd	carcpeB1022
Cp4.1LG20g08820	Carg12332	Silver-seed gourd	carcpeB0620

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g08820	Cp4.1LG02g12950	Cucurbita pepo (Zucchini)	cpecpeB432

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB296
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB386
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB388
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB413
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB439
Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	cpecpeB444
Cp4.1LG20g08820	Cucurbita maxima (Rimu)	cmacpeB636
Cp4.1LG20g08820	Cucurbita moschata (Rifu)	cmocpeB586
Cp4.1LG20g08820	Watermelon (Charleston Gray)	cpewcgB462
Cp4.1LG20g08820	Watermelon (97103) v1	cpewmB526
Cp4.1LG20g08820	Melon (DHL92) v3.5.1	cpemeB469
Cp4.1LG20g08820	Cucumber (Gy14) v2	cgybcpeB669
Cp4.1LG20g08820	Cucumber (Gy14) v2	cgybcpeB817
Cp4.1LG20g08820	Silver-seed gourd	carcpeB0469
Cp4.1LG20g08820	Cucumber (Chinese Long) v3	cpecucB0651
Cp4.1LG20g08820	Wax gourd	cpewgoB0628