Carg21035 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21035
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	THO complex subunit 4A
Location	Cucurbita_argyrosperma_scaffold_122 : 449523 .. 452973 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTTAGCATATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTGGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGATGAATCTTACTACCATCGCCATCCTCTAGCTCTTGTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCTTCTACTACTACTTCTACCAGTTTCTCGTTCTTTTCAAAACGGACTTCGGGTATTTTGTTTTTAATGTTCTGAAAAACATTGGGGGTTTAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGTATTTCAATTTTGGATTTGAGGGCTTGAACATGATAATTTTTTTTTGTATGTATTGCTAAGAATTTGTTGAAATTGTATATGCAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGTATGTTTAAAGTGTGAAGAAGACAAGAGCTTTTGTTTCTTTTTAGCAATATTCTGGCTTTGGTTTGAGTTTTTGTTCTTCGTAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGGTATACATTTCTCTCTTCACTTGTCCTTATTTCTGATTTTTCTATTTGCGTTTACAATTGCAATCATCTATTAACGCAGTTAATGGTATGTGTTCAGAAGTAGATATGAATTTTATTTGCTTTATAATGCTTTTGTAAGCCCATGATTGAAGTAATTGTTTTTAGAGTTGTATTGGATTTTGACGTAGATTTTTCAACATTTTCTTGTTATTCTGACTTAGTTCATAGTAAAATCATATTTCATTGCTTTTTGACATGTCCGCTGAAAGTTTTGAAGGGATTAAATTGAACATAAAAATATTTAATTTCAACAACTCGTTAAGATATGTGTACTTAAAAGGAGGTATTTCTGGTTTGACACTATGGACATAGTAAATAGTAACCCATATGATGTTAATCGAAGAAAGATGGCTACACTTGTATGAGAAAATTAGGGGTTATGTATATCTAAATATCTACCTATCTATATATATATTATGATAAGTAGCCGAACCTTCATTAAGAAAAATTGAAAGAATATTAGGGCATAAAAAAGACTCACTAACGGAGGCAAAATTGTATCCATAATTTATTGTCAATTTTGTTTATGATGACAATGTGTTTCTAGGAGCAATTGCATTCAACAACTTTTATTTCTCAAATTTGCGTTTGATCGCATGTCATTAGCTGCTTCCTAATGTTTATTAATATTTTTGAACAACTGTGGGTATCTGATCAAGTTTTTCACACCTTGGCTAGTATTGTCAAAAAACCACATGAACCTACTTCATTTGGTGTTGGAATGCTGGGTGTTATTTTCATTAGGGATTTGAGTTTACAAATTGTCTATTTGACCACTACCCGAATTTCTTGTAGGTTAGCTTACAAGATTTCTATTCAAGTTCTCCAATAAACAAACAACATTAAGGGATCCGGTTCTGCCACATTTTATGCAAGAAAAAACTTAATATGGGTTCCTTCTTTTGCGTGTCAATCCTTTTAGAAAAGAGTCTAGTTAATGATAACTTGGATAGTTTAATGACCAAGATTATTGAATTGAAGATGAAAGATTCCAAGTTGCAAGAAGTTTGTGTGTCATTGTTGAGGTGTATGTTATTATGTGGAGCCTGTGGAGCCTTTGGGGAGGGAGTAATGGCAGGCTCATTAGAGGGCTTGAGTGGTCTTGGTTTTGACTCCTTATTAGGTTCAACATCTCTTTGTGGGTCCAGAATCAGCTTATGTTTTGATCGTATGATTCTGTAAATTTTGATATTTAAGCTTTTCCATATTGATGATGAATTATATGAAAAAGGTAAAATGCTCACCAAGCCTGCCTTATTAACATTTATCACACAGATATTTTAATTGTGCAATGTTTGATAGAAGCCGTTCTTTCTTTACCTTGGTACCCCTATGACTTCTGCCTGCCTCTGAACAGTTCTGGTAGTTATTTGTGTACATGATCATGCATTACGTTGTTCTTTTTATGCTTCAGTTGGTGCTTAAGTATGAAGCTGATAATTATGTTTTATGTATTTTAATTGAAATTGCTGACATCTAGACTTTTTAATCTGATTTTGATTGCTATTATTGATTCTCTTAATCAGCATGCACTTAACAAATTTTCATTTGATTTTAACAGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGAAGATCAATTAAATCATTTGGTGTGATTTCCTGGTGCTTGATATTCCCAACTTCGTTAGGTGCTTGATGATAAATGTGATAAGGATACCATTTTCTATTTTGCGAGTCATATCATGAAGCCCTGACCTTGAGAGAACCACTAGACCTTGCTAGGATGTGGAGTTTGGGCTTCAATTGTTATTTGTTGCAGTAAACTACAATGAGGTGTTATATATGCTTGAATCTGTAATCTCCCGTTACTTATCTGTTTCTTAATCTTCTCCAATCCTATTTATTTTCCATGAAAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCGACACGGAAGGATTTGGGCGCTTGACATGGGAAGTATTGGTTATAACATAATCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGGTACACCGTTTCTAAATCATAATATTTCCTTGATGGAATGATAGATATAGCCGAGAATCTATTCTGAATATGTTGATTATTGGTTTCTGACTGCAGAATTTCTACTTATATTGCTTTGCAGCGTTTGGTTTTATGAAATAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGAAGGAAGGGG

mRNA sequence

TTTTGAATATTCAAACCGATCTAACAAAGAAGTAATTTTAATGGGGTTTGATTTAGCATATTGCGCTGGATCTTCCTCTACCTTTGTCCATTGTTGAAACCCTAGGAATTCTCTCTCCGATCCACGACCACCACTCCTCCGCTCATCAATGGCAGAGCCTCTCGATATGAGCTTGGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGAAGATCAATTAAATCATTTGGTGTGATTTCCTGGTGCTTGATATTCCCAACTTCGTTAGGTGCTTGATGATAAATGTGATAAGGATACCATTTTCTATTTTGCGAGTCATATCATGAAGCCCTGACCTTGAGAGAACCACTAGACCTTGCTAGGATGTGGAGTTTGGGCTTCAATTGTTATTTGTTGCAGTAAACTACAATGAGGTGTTATATATGCTTGAATCTGTAATCTCCCGTTACTTATCTGTTTCTTAATCTTCTCCAATCCTATTTATTTTCCATGAAAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCGACACGGAAGGATTTGGGCGCTTGACATGGGAAGTATTGGTTATAACATAATCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGCGTTTGGTTTTATGAAATAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGAAGGAAGGGG

Coding sequence (CDS)

ATGGCAGAGCCTCTCGATATGAGCTTGGATGATATCATCAAGAACAACAAGAAATCTGGATCCTCGAACTTCAGGGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCCTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTACTGCCCAGGCGCCGGAGACGGCTTGGTCACACGACATGTTTGTAGATCATGGTGCGGCATATCCTTCACAGCCTGCACGGGCCTCTGCTATCGAAACCGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTGTTTTCAGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGGTCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAAGCAGATGCGCTTGCTGCTATAAAGAGGTACAACAATGTTCAGCTAGATGGGAAGCACATGAAGTTGGAGATTGTAGGAACTAACATCGTGACACCTGCTGTTCCTGCTTCTGCAAATGGCAATTTTGGGAATCCAAATGGATTTCGAAGAGGTGGACATGTACTGGGCCGAAATCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGACGTGGACGTGGGAGTAGCAGCAGAGGTCGTGGGGAGAAATTATCTGCCGAAGATCTAGATGCTGATTTGGAGAAGTATCATGAAGAAGCCATGAAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFGNPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGSSSRGRGEKLSAEDLDADLEKYHEEAMKIN

Homology

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BLAST of Carg21035 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 409.5 bits (1051), Expect = 8.2e-111
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHG+AYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMK 240
           NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAM+
Sbjct: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 242

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BLAST of Carg21035 vs. NCBI nr
Match: XP_022970368.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 406.4 bits (1043), Expect = 6.9e-110
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPASANGNFG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMK 240
           NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAM+
Sbjct: 217 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMQ 276

Query: 241 IN 243
           IN
Sbjct: 277 IN 278

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BLAST of Carg21035 vs. NCBI nr
Match: XP_023520096.1 (THO complex subunit 4A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNI+TPAVPASANGNFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIMTPAVPASANGNFG 180

Query: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMK 240
           NPNGFRRGGHVLGRN XXXXXXXXXXXXXXXXXXXXXXXXXX  EDLDADLEKYHEEAM+
Sbjct: 181 NPNGFRRGGHVLGRN-XXXXXXXXXXXXXXXXXXXXXXXXXXSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 241

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BLAST of Carg21035 vs. NCBI nr
Match: XP_022997830.1 (THO complex subunit 4A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 356.7 bits (914), Expect = 6.3e-95
Identity = 212/242 (87.60%), Postives = 221/242 (91.32%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS A+APET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHD+FVDHG AYPS PARAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLE+VG NIVTP +PAS+N NFG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEVVGANIVTPVLPASSNPNFG 180

Query: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMK 240
           N +GF RGG  LGR XXXXXXXXXXXXXXXXXXXXXXXXXX   EDLDADLEKYHEEAM+
Sbjct: 181 NSSGFLRGGRALGR-XXXXXXXXXXXXXXXXXXXXXXXXXXLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 241

[Close]

BLAST of Carg21035 vs. NCBI nr
Match: XP_023523169.1 (THO complex subunit 4A-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023523170.1 THO complex subunit 4A-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.8 bits (904), Expect = 9.1e-94
Identity = 211/242 (87.19%), Postives = 219/242 (90.50%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M +PLD SLDDIIKNNKKSGSSNFRGRGGASSGP PSRRF NRGLNRAAPYS A+APET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHD+FVDHG AYPS PARAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLEIVG NIVTP +PA +N NFG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPAPSNPNFG 180

Query: 181 NPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEEAMK 240
           N +GF RGG  LG  XXXXXXXXXXXXXXXXXXXXXXXXXX   EDLDADLEKYHEEAM+
Sbjct: 181 NSSGFLRGGRALG-XXXXXXXXXXXXXXXXXXXXXXXXXXXLSAEDLDADLEKYHEEAMQ 240

Query: 241 IN 243
           IN
Sbjct: 241 IN 241

[Close]

BLAST of Carg21035 vs. TAIR10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 197.6 bits (501), Expect = 8.9e-51
Identity = 136/247 (55.06%), Postives = 164/247 (66.40%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS  G                     NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGXXXXXXXXXXXXXXXXXXNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPAS--A 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+   A
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NGNFGNPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYH 240
           NGN       R G       XXXXXXXXXXXXXXXXX            EDLDADL+KYH
Sbjct: 181 NGNSNGAPWSRGGQXXXXXXXXXXXXXXXXXXXXXXXRPGKGPAEKISAEDLDADLDKYH 240

Query: 241 EEAMKIN 243
              M+ N
Sbjct: 241 SGDMETN 245

[Close]

BLAST of Carg21035 vs. TAIR10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 191.4 bits (485), Expect = 6.4e-49
Identity = 119/214 (55.61%), Postives = 136/214 (63.55%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGAS------------SGPGPSRRFRNRGLNRA 60
           M+  LDMSLDDIIK+N+K   S  RGRGG                   SRRF NR   R 
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGS--RGRGGIGXXXXXXXXXXXXXXXXXSRRFANRVGART 60

Query: 61  APYS----TAQAPETAWSHDMFVD-------HGAAYPSQPARASAIETGTKLYVSNLDYG 120
           APYS      QA +  W +D+F          G    +     S+IETGTKLY+SNLDYG
Sbjct: 61  APYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           VSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK M
Sbjct: 121 VSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLM 180

Query: 181 KLEIVGTNIVTPAVPASA--------NGNFGNPN 184
           K+EIVGTN+  PA+P  A        NG  GN N
Sbjct: 181 KIEIVGTNLSAPALPILATAQIPFPTNGILGNFN 212

[Close]

BLAST of Carg21035 vs. TAIR10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-30
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRR--------------FRNRGLN 60
           M++ L+M+LD+I+K +K   S+  R     S G G SR+               R  G  
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAAR-----SGGKGVSRKSGXXXXXPXXVVGXXRGGGPV 60

Query: 61  RAAPYSTAQAPETAWSHDMFVDHGAAYPSQ-----------PARASAIETGTKLYVSNLD 120
           R  P +    P +++S +       + P Q               S +E GT +Y++NLD
Sbjct: 61  RRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK 180
            GV+NEDI+EL++E+G+LKRY+I+YDK+GR  G+AE+V+ R++DA+ A+++YNNV LDG+
Sbjct: 121 QGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGR 180

Query: 181 HMKLEIVGTNIVTPAVPASANGNFGNPNGFRRGGHVLGR 195
            MKLEI+G N  T + P +A  N    NG  +    +G+
Sbjct: 181 PMKLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQ 212

[Close]

BLAST of Carg21035 vs. TAIR10
Match: AT5G37720.1 (ALWAYS EARLY 4)

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-27
Identity = 80/205 (39.02%), Postives = 114/205 (55.61%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRG--------------------RGGASSGPGPSRRF 60
           M+  L+M+LD+I+K  K + S   RG                    RG  +    PS   
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGG-RGXXXXXXXXXXXXXXXXXXARRGPLAVNARPSSFT 60

Query: 61  RNRGLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSN 120
            N+ + R             W   +F D   A     A AS +E GT+L+V+NLD GV+N
Sbjct: 61  INKPVRRVR--------SLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTN 120

Query: 121 EDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLE 180
           EDI+ELFSE+G+++RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+ M+LE
Sbjct: 121 EDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLE 180

Query: 181 IVGTNIVTPA-VPASANGNFGNPNG 185
           I+G N  + A +    N N    NG
Sbjct: 181 ILGGNNSSEAPLSGRVNVNVTGLNG 191

[Close]

BLAST of Carg21035 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-07
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 86  GTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIK 145
           G  LYV NLD  V++E ++ELF+E G +    +  D SG SKG+  + FS  ++A   + 
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386

Query: 146 RYNNVQLDGK 156
             N   + GK
Sbjct: 387 EMNGKMVGGK 396

[Close]

BLAST of Carg21035 vs. Swiss-Prot
Match: sp|Q8L773|THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-48
Identity = 135/247 (54.66%), Postives = 163/247 (65.99%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPE 60
           M+  LDMSLDD+I  N+KS  G                     NR   R+APY +A+APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGXXXXXXXXXXXXXXXXXXNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHDMFVDHGAAYPSQPARASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W HDMF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANG 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGK MK+EIVGTN+ T A P+    
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NFGNPNG--FRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYH 240
           N GN NG             XXXXXXXXXXXXXXXXX            EDLDADL+KYH
Sbjct: 181 N-GNSNGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGKGPAEKISAEDLDADLDKYH 240

Query: 241 EEAMKIN 243
              M+ N
Sbjct: 241 SGDMETN 244

[Close]

BLAST of Carg21035 vs. Swiss-Prot
Match: sp|Q8L719|THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47
Identity = 119/214 (55.61%), Postives = 136/214 (63.55%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGAS------------SGPGPSRRFRNRGLNRA 60
           M+  LDMSLDDIIK+N+K   S  RGRGG                   SRRF NR   R 
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGS--RGRGGIGXXXXXXXXXXXXXXXXXSRRFANRVGART 60

Query: 61  APYS----TAQAPETAWSHDMFVD-------HGAAYPSQPARASAIETGTKLYVSNLDYG 120
           APYS      QA +  W +D+F          G    +     S+IETGTKLY+SNLDYG
Sbjct: 61  APYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHM 180
           VSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK M
Sbjct: 121 VSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLM 180

Query: 181 KLEIVGTNIVTPAVPASA--------NGNFGNPN 184
           K+EIVGTN+  PA+P  A        NG  GN N
Sbjct: 181 KIEIVGTNLSAPALPILATAQIPFPTNGILGNFN 212

[Close]

BLAST of Carg21035 vs. Swiss-Prot
Match: sp|Q9JJW6|ALRF2_MOUSE (Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.5e-31
Identity = 84/187 (44.92%), Postives = 112/187 (59.89%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MA+ +DMSLDDIIK N+     N RG G   + P  +R     G NR APYS  +     
Sbjct: 1   MADKMDMSLDDIIKLNRNQRRVN-RGGGPRRNRPAIAR----GGRNRPAPYSRPKPLPDK 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W HD+F D G            +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++Y
Sbjct: 61  WQHDLF-DSGC------GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           D+SGRS GTA++ F R+ADAL A+K+Y  V LDG+ M +++V + I     PA +    G
Sbjct: 121 DRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQRRPAQS----G 171

Query: 181 NPNGFRR 188
           N  G  R
Sbjct: 181 NRGGMTR 171

[Close]

BLAST of Carg21035 vs. Swiss-Prot
Match: sp|Q94EH8|THO4C_ARATH (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-29
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRR--------------FRNRGLN 60
           M++ L+M+LD+I+K +K   S+  R     S G G SR+               R  G  
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAAR-----SGGKGVSRKSGXXXXXPXXVVGXXRGGGPV 60

Query: 61  RAAPYSTAQAPETAWSHDMFVDHGAAYPSQ-----------PARASAIETGTKLYVSNLD 120
           R  P +    P +++S +       + P Q               S +E GT +Y++NLD
Sbjct: 61  RRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK 180
            GV+NEDI+EL++E+G+LKRY+I+YDK+GR  G+AE+V+ R++DA+ A+++YNNV LDG+
Sbjct: 121 QGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGR 180

Query: 181 HMKLEIVGTNIVTPAVPASANGNFGNPNGFRRGGHVLGR 195
            MKLEI+G N  T + P +A  N    NG  +    +G+
Sbjct: 181 PMKLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQ 212

[Close]

BLAST of Carg21035 vs. Swiss-Prot
Match: sp|O08583|THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 129.0 bits (323), Expect = 7.0e-29
Identity = 84/214 (39.25%), Postives = 113/214 (52.80%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNF-------------------------RGRGGASSGPG 60
           MA+ +DMSLDDIIK N+                                RG G   + P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGXXXXXXXXXXXXXXXXXXXXXXXARVNRGGGPMRNRPA 60

Query: 61  PSRRFRNRGLNRAAPYSTAQAPETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLD 120
            +R     G NR APYS  +     W HD+F D G          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF-DSGF------GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 HMKLEIVGTNIVTPAVPASANGNFGNPNGFRRGG 190
            M +++V + I T   PA +    G       GG
Sbjct: 181 PMNIQLVTSQIDTQRRPAQSINRGGMTRNRGSGG 207

[Close]

BLAST of Carg21035 vs. TrEMBL
Match: tr|A0A0A0LUQ3|A0A0A0LUQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 6.7e-93
Identity = 176/189 (93.12%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGG 190
           NPNGF RGG
Sbjct: 181 NPNGFPRGG 189

[Close]

BLAST of Carg21035 vs. TrEMBL
Match: tr|A0A1S3C5R6|A0A1S3C5R6_CUCME (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.1e-92
Identity = 214/245 (87.35%), Postives = 222/245 (90.61%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180
           DKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFRRGGHVLGR---NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHEE 240
           N NGF RGG  +GR    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +KYHEE
Sbjct: 181 NHNGFPRGGRAMGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKYHEE 240

Query: 241 AMKIN 243
           AM+IN
Sbjct: 241 AMQIN 245

[Close]

BLAST of Carg21035 vs. TrEMBL
Match: tr|A0A1U7ZJE9|A0A1U7ZJE9_NELNU (THO complex subunit 4A-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104594587 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.5e-71
Identity = 179/246 (72.76%), Postives = 199/246 (80.89%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYS---TAQAP 60
           M+  LDMSLDD+IKNNKKSG SNFR            RR  NRG NR  PYS   + QAP
Sbjct: 1   MSSSLDMSLDDLIKNNKKSGGSNFR-XXXXXXXXXXXRRAPNRGANRTTPYSMGKSVQAP 60

Query: 61  ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           ++AW HDMF D  AAYP+Q +RASAIETGTKLY+SNLDYGVSN+DIKELFSEVGDLKRY+
Sbjct: 61  DSAWQHDMFTDQAAAYPAQASRASAIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAV-PASAN 180
           I+YD+SGRSKGTAE+VFSR+ADALAA+KRYNNVQLDGK MK+EIVGTN+ TPAV PA+ N
Sbjct: 121 IHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEIVGTNVTTPAVAPAATN 180

Query: 181 GNFGNPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHE 240
           G FGNPN   R     G+ XXXXXXXXXXXXXXXXXXXXXXXXXX   EDLDADLEKYH 
Sbjct: 181 GKFGNPNSVPRS----GQXXXXXXXXXXXXXXXXXXXXXXXXXXXITAEDLDADLEKYHS 240

Query: 241 EAMKIN 243
           EAM+IN
Sbjct: 241 EAMQIN 241

[Close]

BLAST of Carg21035 vs. TrEMBL
Match: tr|I1M4U5|I1M4U5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100783362 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 172/248 (69.35%), Postives = 199/248 (80.24%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60
           M+  LDM+L+DIIKNNKKS  +N RGRG A SGPGP+RR  NR  NRAAPY+ A+APETA
Sbjct: 1   MSAALDMTLEDIIKNNKKSSLANTRGRGRA-SGPGPARRLPNRAANRAAPYAAAKAPETA 60

Query: 61  WSHDMFVDH--GAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSI 120
           W HDM+ +    AAYP    RAS+IETGTKLY+SNLDYGVSN+DIKELF EVGD+KR+++
Sbjct: 61  WKHDMYANQPVAAAYPG--GRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDVKRHTV 120

Query: 121 NYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGN 180
           +YD+SGRSKGTAE+VFSR+ADA+AA+KRYNNVQLDGK MK+EIVGTNI T A P + NG 
Sbjct: 121 HYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAAPPAVNGT 180

Query: 181 FGNPNGFRRGGHVLGRN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKY 240
           FGNP G  R G   GR+    XXXXXXXXXXXXXXXXXXXXXX       EDLDADLEKY
Sbjct: 181 FGNPTGVPRSGQ--GRSGSXXXXXXXXXXXXXXXXXXXXXXXXRDEKVSAEDLDADLEKY 240

Query: 241 HEEAMKIN 243
           H EAM++N
Sbjct: 241 HAEAMQLN 243

[Close]

BLAST of Carg21035 vs. TrEMBL
Match: tr|A0A1U8A5E5|A0A1U8A5E5_NELNU (THO complex subunit 4A OS=Nelumbo nucifera OX=4432 GN=LOC104599317 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 175/246 (71.14%), Postives = 195/246 (79.27%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYST---AQAP 60
           M+  LDM+L+D+IKNNKKSG                 RRF NRG NR APYST    QAP
Sbjct: 1   MSSALDMTLEDLIKNNKKSG-GXXXXXXXXXXXXXXXRRFPNRGANRTAPYSTGKPVQAP 60

Query: 61  ETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           ++AW HDMF D  AAYP+Q AR SAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+
Sbjct: 61  DSAWQHDMFTDQAAAYPAQAARTSAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTP-AVPASAN 180
           ++YD+SGRSKGTAE+VFSR+ADALAA+KRYNNVQLDGK MK+E+VGTNI TP AVP +AN
Sbjct: 121 VHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEVVGTNIATPVAVPPAAN 180

Query: 181 GNFGNPNGFRRGGHVLGRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLDADLEKYHE 240
           G FGNPNG  R G      XXXXXXXXXXXXXXXXXXXXXXXXX    EDLDADLEKYH 
Sbjct: 181 GGFGNPNGVPRSG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISAEDLDADLEKYHS 240

Query: 241 EAMKIN 243
           EAM+IN
Sbjct: 241 EAMQIN 244

The following BLAST results are available for this feature:

BLAST of Carg21035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964653.1	8.2e-111	99.17	THO complex subunit 4B-like [Cucurbita moschata]	[more]
XP_022970368.1	6.9e-110	99.17	THO complex subunit 4A-like [Cucurbita maxima]	[more]
XP_023520096.1	1.5e-109	97.93	THO complex subunit 4A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997830.1	6.3e-95	87.60	THO complex subunit 4A-like isoform X2 [Cucurbita maxima]	[more]
XP_023523169.1	9.1e-94	87.19	THO complex subunit 4A-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_02352317...	[more]

BLAST of Carg21035 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59950.5	8.9e-51	55.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	6.4e-49	55.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	3.0e-30	36.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.1	5.2e-27	39.02	ALWAYS EARLY 4	[more]
AT2G23350.1	3.5e-07	37.14	poly(A) binding protein 4	[more]

BLAST of Carg21035 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L773\|THO4A_ARATH	3.9e-48	54.66	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
sp\|Q8L719\|THO4B_ARATH	1.1e-47	55.61	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
sp\|Q9JJW6\|ALRF2_MOUSE	7.5e-31	44.92	Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1	[more]
sp\|Q94EH8\|THO4C_ARATH	5.3e-29	36.53	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
sp\|O08583\|THOC4_MOUSE	7.0e-29	39.25	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of Carg21035 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUQ3\|A0A0A0LUQ3_CUCSA	6.7e-93	93.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1	[more]
tr\|A0A1S3C5R6\|A0A1S3C5R6_CUCME	1.1e-92	87.35	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
tr\|A0A1U7ZJE9\|A0A1U7ZJE9_NELNU	2.5e-71	72.76	THO complex subunit 4A-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC1045945...	[more]
tr\|I1M4U5\|I1M4U5_SOYBN	1.8e-69	69.35	Uncharacterized protein OS=Glycine max OX=3847 GN=100783362 PE=4 SV=1	[more]
tr\|A0A1U8A5E5\|A0A1U8A5E5_NELNU	1.8e-69	71.14	THO complex subunit 4A OS=Nelumbo nucifera OX=4432 GN=LOC104599317 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR025715	FoP_C
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21035-RA	Carg21035-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 224..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..242
None	No IPR available	PANTHER	PTHR19965:SF51	THO COMPLEX SUBUNIT 4A	coord: 1..238
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..238
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 87..161 e-value: 1.34659E-41 score: 137.771
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 e-value: 4.3E-19 score: 79.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..157 e-value: 1.3E-15 score: 56.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..164 score: 16.125
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 170..242 e-value: 6.0E-13 score: 59.0
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 186..236 e-value: 2.7E-7 score: 31.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 76..166 e-value: 5.1E-22 score: 79.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 50..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21035	Cla013288	Watermelon (97103) v1	carwmB0726
Carg21035	Cla008288	Watermelon (97103) v1	carwmB0725
Carg21035	Csa1G480690	Cucumber (Chinese Long) v2	carcuB0746
Carg21035	MELO3C020710	Melon (DHL92) v3.5.1	carmeB0722
Carg21035	ClCG03G001960	Watermelon (Charleston Gray)	carwcgB0704
Carg21035	ClCG02G020360	Watermelon (Charleston Gray)	carwcgB0703
Carg21035	CSPI01G22430	Wild cucumber (PI 183967)	carcpiB0762
Carg21035	Cucsa.213420	Cucumber (Gy14) v1	carcgyB0819
Carg21035	CmaCh01G005600	Cucurbita maxima (Rimu)	carcmaB1018
Carg21035	CmaCh13G001610	Cucurbita maxima (Rimu)	carcmaB1017
Carg21035	CmoCh01G005860	Cucurbita moschata (Rifu)	carcmoB0990
Carg21035	CmoCh13G001640	Cucurbita moschata (Rifu)	carcmoB0989
Carg21035	Lsi02G014020	Bottle gourd (USVL1VR-Ls)	carlsiB666
Carg21035	Cp4.1LG05g08900	Cucurbita pepo (Zucchini)	carcpeB1024
Carg21035	Cp4.1LG02g12950	Cucurbita pepo (Zucchini)	carcpeB1023
Carg21035	Cp4.1LG20g08820	Cucurbita pepo (Zucchini)	carcpeB1022
Carg21035	CsGy1G022010	Cucumber (Gy14) v2	carcgybB0724
Carg21035	MELO3C020710.2	Melon (DHL92) v3.6.1	carmedB0734
Carg21035	CsaV3_1G033610	Cucumber (Chinese Long) v3	carcucB0765
Carg21035	Cla97C02G046320	Watermelon (97103) v2	carwmbB0760
Carg21035	Cla97C03G052980	Watermelon (97103) v2	carwmbB0761
Carg21035	Bhi10G000547	Wax gourd	carwgoB0856
Carg21035	Bhi08G000325	Wax gourd	carwgoB0860

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21035	Carg20280	Silver-seed gourd	carcarB335
Carg21035	Carg12332	Silver-seed gourd	carcarB447

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21035	Melon (DHL92) v3.5.1	carmeB0721