Cp4.1LG20g06550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g06550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSNF1-related protein kinase regulatory subunit beta-2
LocationCp4.1LG20 : 4137886 .. 4140680 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTCTAATCAGTCCCAACTTCAATGATGATCTTGCTTGAAGTGGAGGGCGATAAAATGGGCAAGAAAACAAGAACAATCTCACTTTCTTCTCCTTTTCTCTGCCTTAATTCTCGCTTTAGCACTCGTGTGGGGTGAACCCTGAAGCCTCAAGATTACAGCCATCTCCCCAGAAACGGAATACTCATTCAGTGATGGTGGAGTTGGTGTAGAGACCCCATCAATGGCCTCCTTCCTCCATTCAATCAATTCCAACGCCGCTCCATTTCATTGATCATGTGAGGACGACAATCCCCAATTTCTTCTCCCAACGCTGCTCCCTTGAGCCGCCTCTGATTCTTACCCAAGTCATCGGAGAATTTTGTTGAAGATAAGGGGGTTTAGCGATTCTCCTTCGATATCGATTTCTGGGGTTTCTTTTTGTCGTCTATGATTTTTGATTTCCCTTTCTCTAATCTGATTTTGAGGCTCTGGAAGTGGGTTTTGTGTTTTGTTTTCTTGTTCTTAGTTCTTTAAGGGTTTTGGGTTGTATTTGTACTGATTAATCAATGGGTAACGTGAATGGGAGAGAGTATGTAGACGAAGAAGATGATGATGAAAATGAAGAAGAAGTAGAAGAAGAGGGTTTAATTGTGCATGAGGGCGTCGCCGTGGCTGATGGGGCTCATATTCTATACCGCCCGCAAGGTGTTTGTCAAAAGTTGTTGGGCGGCCAGTCCCCTCCACAAAGCCCCACGGCCACTCGATCGCCATTGATTTTCACTCCTCAAGTAAGCCCTCTCTCTCTCTTTATCTTGAGAAGTTCCTTTTAGTTTCTTGTAGCTAATTGCCTATGCTTACTAGCAATGTGATGAATTTGAATTAATGTATTACTTGGATTTTGAATTTCATTTGGAGATTGATATTACCTCTTGTAGATATAACTTGTATGACAATGGATAAATGTTAGTTTTGATCTTCAAGTTTGATACAGAGATTTGTTGTTGGCTGAAAAGAAGTGGGAGAAGTTTGAGATTATGAGGGTTAATGTCGAGGATGGTTGGGAGAGAGTTCTACCTCGACTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAAACACTATCTCCATTGGTACGAGACCTTTTGGGAAATCAAAATCAAAACCATGAGAGCTTATAGTCAAAGTGGACAATATCGTACCATTGTGGAGGGAGTCCCACGTTGGCTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAACACTATCTCTATTGGTATGAGGCCTTTTGGGAAATCAAAAGCAAAACCATGAGAGCTTATGTTCCAAGCGGACAATATCGTACCATTATGGAGGTTTGTGATTTCTAACCGTTAGTTGAAGACTTCGCCTACTTTTTTTTTTTATTCGAGAAGTTGGTTTAAGGCAGTTGCTTTAGCTTAAACTTTATATAATGGGGTTCATTCATTTTTTTCCCCTTCAATATATATACATTGGGTGTATCTAGCTGCTGGTTCAGCTTAGAGCTGACAAGAAAATGTTCAATTTCAAAGAGATATAAAGTTACTTCAAACTTGTAAAACTTTAACAAATTCATGTTACTCTCAGTTGGATAGGTTGTTTACTATCATCTTTTATTAGTTCCTTGATGTTTCTTTTACATTTTTATCCTCAGGTTCCGCTCACTCCTCTACGAAAACCAGATGAGATGCTCGTAATTAGCCAATCCCAAATGATGCAAGGTTCCTTGGGTTATGAAGAAACGTGCGAACAAAGCATTCCAACCATGATTACATGGACTTATGGAGGAAAGGAAGTAGCTATTGAGGGATCATGGGATCTATGGAGAACAAGGTTTTCTTCTCTTTTTGTACCATTCCACGATTATCGTTTCTGAACTGCTGCCCGAAATATCTGATACTAGTTGTACCTCATTAACCAGAACGCCCTTGCAGAGATCAGGGAGAGACTTCACTATAATGAAAGTGCTTCCTGCTGGGGTTTATCAATATAGGTTTCTCGTGGACGGACAATGGAGGTATTCGCCGGAGTTGCCTTGGGGCCAAGATGATGTTGGCAACGCGTACAATGTTTTGGACTTGCAGGTAACTGATAACGTAGGATATGCAAGGAAAAGGGTAGAGTTAATTGACTTGGAGATGAACTCGTGTTGTCTCGTAAACAACCATTAATATTTTAGGCTACTTCAATGCTTTTTCCCTATGAGACCCGAAACTTGGTTTGTCTAACTAACAATCAATAGTCCATCGACATAGACAATCTATCGTTGTATGTCAATTGCTTTTTTTCCTTTTATATTCCGCTTGTTCTTCATTATTGGTGTTGGTGTTACTATTCTCTGTTAGAAATCACGACTCTCCATAATGGTATGATATGGTCCACTTTGAACATAAGCTCTCATGGTTTTTCTATTGGTTTCCCCACGGCCCTCGATAGACCTTACATCATTAGTTCATCAATTATGCAGGACAACGTGCCCGAAGATATCGAAAGCATCTCTAGCTTCGAGCCTCCTCAGTCACCAGACTCGAGCTATGACAATTTACTACTCGGGTCTGATGACTACGCAAAAGAACCGCCATTGGTTCCCCCACACCTACAGAAGACACTGCTCGATTCGCCATCATCATACATGGAGATTCCACCCTGTCTGTCAAGGCCACAACATGTAGTATTGAATCATCTTTACATGCAGAGAGGGAAGAGCGGTCCATCGATTGTTGCACTCGGTACGACACATCGGTTTCTAACCAAGTATGTAACTGTTGTGCTCTACAAGTCTTTCCAA

mRNA sequence

TTTTTTTCTAATCAGTCCCAACTTCAATGATGATCTTGCTTGAAGTGGAGGGCGATAAAATGGGCAAGAAAACAAGAACAATCTCACTTTCTTCTCCTTTTCTCTGCCTTAATTCTCGCTTTAGCACTCGTGTGGGGTGAACCCTGAAGCCTCAAGATTACAGCCATCTCCCCAGAAACGGAATACTCATTCAGTGATGGTGGAGTTGGTGTAGAGACCCCATCAATGGCCTCCTTCCTCCATTCAATCAATTCCAACGCCGCTCCATTTCATTGATCATGTGAGGACGACAATCCCCAATTTCTTCTCCCAACGCTGCTCCCTTGAGCCGCCTCTGATTCTTACCCAAGTCATCGGAGAATTTTGTTGAAGATAAGGGGGTTTAGCGATTCTCCTTCGATATCGATTTCTGGGGTTTCTTTTTGTCGTCTATGATTTTTGATTTCCCTTTCTCTAATCTGATTTTGAGGCTCTGGAAGTGGGTTTTGTGTTTTGTTTTCTTGTTCTTAGTTCTTTAAGGGTTTTGGGTTGTATTTGTACTGATTAATCAATGGGTAACGTGAATGGGAGAGAGTATGTAGACGAAGAAGATGATGATGAAAATGAAGAAGAAGTAGAAGAAGAGGGTTTAATTGTGCATGAGGGCGTCGCCGTGGCTGATGGGGCTCATATTCTATACCGCCCGCAAGGTGTTTGTCAAAAGTTGTTGGGCGGCCAGTCCCCTCCACAAAGCCCCACGGCCACTCGATCGCCATTGATTTTCACTCCTCAAGTTCCGCTCACTCCTCTACGAAAACCAGATGAGATGCTCGTAATTAGCCAATCCCAAATGATGCAAGGTTCCTTGGGTTATGAAGAAACGTGCGAACAAAGCATTCCAACCATGATTACATGGACTTATGGAGGAAAGGAAGTAGCTATTGAGGGATCATGGGATCTATGGAGAACAAGAACGCCCTTGCAGAGATCAGGGAGAGACTTCACTATAATGAAAGTGCTTCCTGCTGGGGTTTATCAATATAGGTTTCTCGTGGACGGACAATGGAGGTATTCGCCGGAGTTGCCTTGGGGCCAAGATGATGTTGGCAACGCGTACAATGTTTTGGACTTGCAGAGAGGGAAGAGCGGTCCATCGATTGTTGCACTCGGTACGACACATCGGTTTCTAACCAAGTATGTAACTGTTGTGCTCTACAAGTCTTTCCAA

Coding sequence (CDS)

ATGGGTAACGTGAATGGGAGAGAGTATGTAGACGAAGAAGATGATGATGAAAATGAAGAAGAAGTAGAAGAAGAGGGTTTAATTGTGCATGAGGGCGTCGCCGTGGCTGATGGGGCTCATATTCTATACCGCCCGCAAGGTGTTTGTCAAAAGTTGTTGGGCGGCCAGTCCCCTCCACAAAGCCCCACGGCCACTCGATCGCCATTGATTTTCACTCCTCAAGTTCCGCTCACTCCTCTACGAAAACCAGATGAGATGCTCGTAATTAGCCAATCCCAAATGATGCAAGGTTCCTTGGGTTATGAAGAAACGTGCGAACAAAGCATTCCAACCATGATTACATGGACTTATGGAGGAAAGGAAGTAGCTATTGAGGGATCATGGGATCTATGGAGAACAAGAACGCCCTTGCAGAGATCAGGGAGAGACTTCACTATAATGAAAGTGCTTCCTGCTGGGGTTTATCAATATAGGTTTCTCGTGGACGGACAATGGAGGTATTCGCCGGAGTTGCCTTGGGGCCAAGATGATGTTGGCAACGCGTACAATGTTTTGGACTTGCAGAGAGGGAAGAGCGGTCCATCGATTGTTGCACTCGGTACGACACATCGGTTTCTAACCAAGTATGTAACTGTTGTGCTCTACAAGTCTTTCCAA

Protein sequence

MGNVNGREYVDEEDDDENEEEVEEEGLIVHEGVAVADGAHILYRPQGVCQKLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETCEQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELPWGQDDVGNAYNVLDLQRGKSGPSIVALGTTHRFLTKYVTVVLYKSFQ
Homology
[Close]
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.4e-51
Identity = 106/193 (54.92%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 1   MGNVNGREYVDEED----DDENEEEVEEEGLIVHEGVAVADGAHILYRPQGVCQKLLGGQ 60
           MGNVN RE  +  +    +DE+ E    E +      A +DG H       V    L GQ
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMS-----AASDGNH-------VAPPELMGQ 60

Query: 61  SPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIPTMITW 120
           SPP SP AT+SPL+F PQVP+ PL++PDE+ + + S M   S  YEE   EQ IPTMITW
Sbjct: 61  SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITW 120

Query: 121 TYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELPWGQ 180
            +GGKE+A+EGSWD W+TR+ LQRSG+DFTIMKVLP+GVY+YRF+VDGQWR++PELP  +
Sbjct: 121 CHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLAR 180

Query: 181 DDVGNAYNVLDLQ 189
           DD GN +N+LDLQ
Sbjct: 181 DDAGNTFNILDLQ 181

[Close]
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 64/135 (47.41%), Postives = 93/135 (68.89%), Query Frame = 1 

Query: 57  SPPQSPTATRSPLIFTPQVPLTPLRK----PDEMLVISQSQMMQGSLGYEETCEQSIPTM 116
           SPP SP  + SP +F PQVP+ PL++    P   +  +QSQ +     ++   EQ IPT+
Sbjct: 49  SPPGSPARSPSPFLFAPQVPVAPLQRANAPPPNNIQWNQSQRV-----FDNPPEQGIPTI 108

Query: 117 ITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELP 176
           ITW  GG +VA+EGSWD WR+R  LQ+SG+D +I+ VLP+G+Y Y+ +VDG+ +Y P+LP
Sbjct: 109 ITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLP 168

Query: 177 WGQDDVGNAYNVLDL 188
           +  D+VGN  N+LD+
Sbjct: 169 FVADEVGNVCNILDV 178

[Close]
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-15
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 1 

Query: 54  GGQSPPQSPT----ATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETCEQSI 113
           GG +P +       +T  P +F+    L   + P +   +S  Q ++ S+   +  +Q+ 
Sbjct: 25  GGHAPGKEHKIMVGSTDDPSVFS----LPDSKLPGDKEFVSWQQDLEDSV---KPTQQAR 84

Query: 114 PTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSP 173
           PT+I W+ GGKEV I GS++ W T+ PL +S  DF  +  LP G +QY+F VDGQW + P
Sbjct: 85  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 144

Query: 174 ELPWGQDDVGNAYNVLDLQR 190
             P     +G   N++ +++
Sbjct: 145 SEPVVTSQLGTINNLIHVKK 157

[Close]
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.7e-15
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1 

Query: 106 EQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQW 165
           +Q+ PT+I W+ GGKEV I GS++ W T+ PL +S  DF  +  LP G +QY+F VDGQW
Sbjct: 73  QQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQW 132

Query: 166 RYSPELPWGQDDVGNAYNVLDLQR 190
            + P  P     +G   N++ +++
Sbjct: 133 VHDPSEPVVTSQLGTINNLIHVKK 156

[Close]
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 64  ATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETCEQSIPTMITWTYGGKEVA 123
           +T  P +F+    L   + P +   +   Q +  S+   +  +Q+ PT+I W+ GGKEV 
Sbjct: 38  STDDPSVFS----LPDSKLPGDKEFVPWQQDLDDSV---KPAQQARPTVIRWSEGGKEVF 97

Query: 124 IEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELPWGQDDVGNAYN 183
           I GS++ W T+ PL +S  DF  +  LP G +QY+F VDGQW + P  P     +G   N
Sbjct: 98  ISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINN 156

Query: 184 VLDLQR 190
           ++ +++
Sbjct: 158 LIHVKK 156

[Close]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match: A0A0A0LYK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181340 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.8e-79
Identity = 152/199 (76.38%), Postives = 165/199 (82.91%), Query Frame = 1 

Query: 1   MGNVNGREYVDE----------EDDDENEEEVEEEGLIVHEGVAVADGAHILYRPQGVCQ 60
           MGNVNGREYVDE          E+++E EEE EE+ LIVHEGV + DGA IL   QGVC 
Sbjct: 1   MGNVNGREYVDESPSGSVEENEEEEEEIEEEEEEDELIVHEGVPMPDGAPILCHSQGVCS 60

Query: 61  KLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSI 120
           KL+ GQSPPQSPT TRSPLIFTPQVPLTPLRK DEML+ + SQ MQ SL YE+TC EQSI
Sbjct: 61  KLMRGQSPPQSPTTTRSPLIFTPQVPLTPLRKADEMLIHTHSQ-MQSSLAYEDTCNEQSI 120

Query: 121 PTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSP 180
           PTMITW+YGGKEV IEGSWD WRTR PLQRSG+DFT+MKVLPAGVYQYRFLVDGQWRY+P
Sbjct: 121 PTMITWSYGGKEVTIEGSWDCWRTRMPLQRSGKDFTLMKVLPAGVYQYRFLVDGQWRYAP 180

Query: 181 ELPWGQDDVGNAYNVLDLQ 189
           ELPW QDD GNAYNVLDLQ
Sbjct: 181 ELPWAQDDAGNAYNVLDLQ 198

[Close]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match: B9SA62_RICCO (Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0861290 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.9e-58
Identity = 119/203 (58.62%), Postives = 145/203 (71.43%), Query Frame = 1 

Query: 1   MGNVNGREYVDEEDDDENEEE--------------VEEEGLIVHEGVAVADGAHILYRPQ 60
           MGNVNGR   D E++  N  +              V+EEG    +GV V DG+ + Y P 
Sbjct: 1   MGNVNGRGEEDGENNIINNNKSPSGSSRGGGIGVVVDEEGGCGTDGVVVPDGSRLAYLPP 60

Query: 61  GVCQKLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC- 120
                 L GQSPP SP AT SPL+FTPQVP+ PL++PDE+ + S S  MQ ++GYE+ C 
Sbjct: 61  ---PPELMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQIPSNS-WMQTNVGYEDICD 120

Query: 121 EQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQW 180
           EQ IPTMITW+YGGKEVA+EGSWD W+ R PLQRSG+D+TIMKVLP+GVYQYRF++DGQW
Sbjct: 121 EQGIPTMITWSYGGKEVAVEGSWDNWKMRIPLQRSGKDYTIMKVLPSGVYQYRFIIDGQW 180

Query: 181 RYSPELPWGQDDVGNAYNVLDLQ 189
           RY P+LPW QDD GNAYN+LDLQ
Sbjct: 181 RYIPDLPWAQDDTGNAYNILDLQ 199

[Close]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match: F6GZ00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0259g00150 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 118/198 (59.60%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MGNVNGREYVDEEDDDENEEEVEEEGLI---------VHEGVAVADGAHILYRPQGVCQK 60
           MGNVNGRE   +     +   VEEEG            H+ +A     H+ Y P     +
Sbjct: 1   MGNVNGRE---DGGGSPSTVGVEEEGGGDGGGGGSGGAHQNMATRLETHVSYHPSSGSPE 60

Query: 61  LLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIP 120
           L+G QSPP SP AT+SPL+FTPQ+P+ PL+KPDEML+ + S  MQ S GYE+ C EQ IP
Sbjct: 61  LMG-QSPPHSPRATQSPLMFTPQIPVIPLQKPDEMLITNHS-WMQASSGYEDMCSEQGIP 120

Query: 121 TMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPE 180
           TMITW+YGGKEVA+EGSWD W+ R PLQRSG++FTIMKVLP+GVYQYRF+VDGQWRY P+
Sbjct: 121 TMITWSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYRFIVDGQWRYIPD 180

Query: 181 LPWGQDDVGNAYNVLDLQ 189
           +PW QDD GNAYN+LDLQ
Sbjct: 181 MPWAQDDAGNAYNILDLQ 193

[Close]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match: A0A061GHE1_THECC (5'-AMP-activated protein kinase beta-2 subunit protein isoform 1 OS=Theobroma cacao GN=TCM_030434 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 117/190 (61.58%), Postives = 137/190 (72.11%), Query Frame = 1 

Query: 1   MGNVNGREYVDEEDDDENEEEVEEEG-LIVHEGVAVADGAHILYRPQGVCQKLLGGQSPP 60
           MGNVNGRE     D   +   VEEEG   VHE +A   G                  SPP
Sbjct: 1   MGNVNGRE-----DGSSSTSGVEEEGGNSVHEAMAAPMG-----------------HSPP 60

Query: 61  QSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIPTMITWTYG 120
            SPTAT SPL+FTPQVP+ PL++PDE+   SQS  +Q ++GYE+TC E+ IPTMITW YG
Sbjct: 61  HSPTATHSPLMFTPQVPIVPLQRPDEIHTPSQS-WLQATIGYEDTCTEKGIPTMITWGYG 120

Query: 121 GKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELPWGQDDV 180
           GKEVA+EGSWD W+TR PLQR G+DFTIMKVLP+GVYQYRF+VDGQWRY+P+LPW QDDV
Sbjct: 121 GKEVAVEGSWDNWKTRIPLQRCGKDFTIMKVLPSGVYQYRFIVDGQWRYAPDLPWAQDDV 167

Query: 181 GNAYNVLDLQ 189
           GNA N+LDLQ
Sbjct: 181 GNANNILDLQ 167

[Close]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match: B9IH18_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00810g PE=4 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 118/198 (59.60%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 1   MGNVNGREYVDE---------EDDDENEEEVEEEGLIVHEGVAVADGAHILYRPQGVCQK 60
           MGNVNGRE             E +  N  EV          +  +D +H+ Y P    + 
Sbjct: 1   MGNVNGREEEGAISPSSGCGGEGESHNSSEV----------MVASDESHVTY-PAPPPEM 60

Query: 61  LLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIP 120
           +  G SPP SP AT SPL+FTPQVP+ PL++PDE+ V S S  MQ SLGYEE C EQ IP
Sbjct: 61  M--GHSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQVPSHS-WMQNSLGYEEMCNEQGIP 120

Query: 121 TMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPE 180
           TMITWTYGGKEVA+EGSWD W+TR PLQRSG+D+TIMKVLP+GVYQYRF+VDGQWRY+P+
Sbjct: 121 TMITWTYGGKEVAVEGSWDDWKTRMPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYAPD 180

Query: 181 LPWGQDDVGNAYNVLDLQ 189
           LPW +DD GNAYN LDLQ
Sbjct: 181 LPWAKDDSGNAYNTLDLQ 184

[Close]
BLAST of Cp4.1LG20g06550 vs. TAIR10
Match: AT4G16360.3 (AT4G16360.3 5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 199.1 bits (505), Expect = 2.8e-51
Identity = 95/156 (60.90%), Postives = 118/156 (75.64%), Query Frame = 1 

Query: 34  AVADGAHILYRPQGVCQKLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQ 93
           A +DG H       V    L GQSPP SP AT+SPL+F PQVP+ PL++PDE+ + + S 
Sbjct: 5   AASDGNH-------VAPPELMGQSPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSW 64

Query: 94  MMQGSLGYEETC-EQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPA 153
           M   S  YEE   EQ IPTMITW +GGKE+A+EGSWD W+TR+ LQRSG+DFTIMKVLP+
Sbjct: 65  MQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPS 124

Query: 154 GVYQYRFLVDGQWRYSPELPWGQDDVGNAYNVLDLQ 189
           GVY+YRF+VDGQWR++PELP  +DD GN +N+LDLQ
Sbjct: 125 GVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQ 153

[Close]
BLAST of Cp4.1LG20g06550 vs. TAIR10
Match: AT5G21170.2 (AT5G21170.2 5'-AMP-activated protein kinase beta-2 subunit protein)

HSP 1 Score: 117.9 bits (294), Expect = 8.1e-27
Identity = 54/117 (46.15%), Postives = 81/117 (69.23%), Query Frame = 1 

Query: 75  VPLTPLRK----PDEMLVISQSQMMQGSLGYEETCEQSIPTMITWTYGGKEVAIEGSWDL 134
           VP+ PL++    P   +  +QSQ +     ++   EQ IPT+ITW  GG +VA+EGSWD 
Sbjct: 104 VPVAPLQRANAPPPNNIQWNQSQRV-----FDNPPEQGIPTIITWNQGGNDVAVEGSWDN 163

Query: 135 WRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPELPWGQDDVGNAYNVLDL 188
           WR+R  LQ+SG+D +I+ VLP+G+Y Y+ +VDG+ +Y P+LP+  D+VGN  N+LD+
Sbjct: 164 WRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDV 215

[Close]
BLAST of Cp4.1LG20g06550 vs. TAIR10
Match: AT1G09020.1 (AT1G09020.1 homolog of yeast sucrose nonfermenting 4)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 30/94 (31.91%), Postives = 47/94 (50.00%), Query Frame = 1 

Query: 110 PTMITWTYGGKEVAIEGSWDLWRTR---TPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWR 169
           PT   W YGG+ V + GS+  W      +PL+     F ++  L  G +QY+F VDG+WR
Sbjct: 22  PTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWR 81

Query: 170 YSPELPWGQDDVGNAYNVLDLQRGKSGPSIVALG 201
           +    P+   + G   N + +    +GP +V  G
Sbjct: 82  HDEHQPFVSGN-GGVVNTIFI----TGPDMVPAG 110

[Close]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match: gi|659127229|ref|XP_008463594.1| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 5.4e-81
Identity = 158/197 (80.20%), Postives = 170/197 (86.29%), Query Frame = 1 

Query: 1   MGNVNGREYVDE------EDDDENEEEVEEE--GLIVHEGVAVADGAHILYRPQGVCQKL 60
           MGNVNGREYVDE      E++DENEEEVEEE  GLIVHEGV +ADGA IL    GVC KL
Sbjct: 1   MGNVNGREYVDESPSGSVEENDENEEEVEEEEDGLIVHEGVPMADGAPILCHSLGVCSKL 60

Query: 61  LGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIPT 120
           + GQSPPQSPTATRSPLIFTPQVPLTPLRK DEML+ + SQ MQ SLG+E+TC EQSIPT
Sbjct: 61  MRGQSPPQSPTATRSPLIFTPQVPLTPLRKADEMLIHAHSQ-MQSSLGFEDTCNEQSIPT 120

Query: 121 MITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPEL 180
           MITW+YGGKEVAIEGSWD WRTR PLQRSG+DFT+MKVLPAGVYQYRF VDGQWRY+PEL
Sbjct: 121 MITWSYGGKEVAIEGSWDHWRTRMPLQRSGKDFTLMKVLPAGVYQYRFFVDGQWRYAPEL 180

Query: 181 PWGQDDVGNAYNVLDLQ 189
           PW QDD GNAYNVLDLQ
Sbjct: 181 PWAQDDSGNAYNVLDLQ 196

[Close]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match: gi|778659706|ref|XP_011654892.1| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 1.1e-78
Identity = 152/199 (76.38%), Postives = 165/199 (82.91%), Query Frame = 1 

Query: 1   MGNVNGREYVDE----------EDDDENEEEVEEEGLIVHEGVAVADGAHILYRPQGVCQ 60
           MGNVNGREYVDE          E+++E EEE EE+ LIVHEGV + DGA IL   QGVC 
Sbjct: 1   MGNVNGREYVDESPSGSVEENEEEEEEIEEEEEEDELIVHEGVPMPDGAPILCHSQGVCS 60

Query: 61  KLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSI 120
           KL+ GQSPPQSPT TRSPLIFTPQVPLTPLRK DEML+ + SQ MQ SL YE+TC EQSI
Sbjct: 61  KLMRGQSPPQSPTTTRSPLIFTPQVPLTPLRKADEMLIHTHSQ-MQSSLAYEDTCNEQSI 120

Query: 121 PTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSP 180
           PTMITW+YGGKEV IEGSWD WRTR PLQRSG+DFT+MKVLPAGVYQYRFLVDGQWRY+P
Sbjct: 121 PTMITWSYGGKEVTIEGSWDCWRTRMPLQRSGKDFTLMKVLPAGVYQYRFLVDGQWRYAP 180

Query: 181 ELPWGQDDVGNAYNVLDLQ 189
           ELPW QDD GNAYNVLDLQ
Sbjct: 181 ELPWAQDDAGNAYNVLDLQ 198

[Close]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match: gi|255563760|ref|XP_002522881.1| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Ricinus communis])

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57
Identity = 119/203 (58.62%), Postives = 145/203 (71.43%), Query Frame = 1 

Query: 1   MGNVNGREYVDEEDDDENEEE--------------VEEEGLIVHEGVAVADGAHILYRPQ 60
           MGNVNGR   D E++  N  +              V+EEG    +GV V DG+ + Y P 
Sbjct: 1   MGNVNGRGEEDGENNIINNNKSPSGSSRGGGIGVVVDEEGGCGTDGVVVPDGSRLAYLPP 60

Query: 61  GVCQKLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC- 120
                 L GQSPP SP AT SPL+FTPQVP+ PL++PDE+ + S S  MQ ++GYE+ C 
Sbjct: 61  ---PPELMGQSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQIPSNS-WMQTNVGYEDICD 120

Query: 121 EQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQW 180
           EQ IPTMITW+YGGKEVA+EGSWD W+ R PLQRSG+D+TIMKVLP+GVYQYRF++DGQW
Sbjct: 121 EQGIPTMITWSYGGKEVAVEGSWDNWKMRIPLQRSGKDYTIMKVLPSGVYQYRFIIDGQW 180

Query: 181 RYSPELPWGQDDVGNAYNVLDLQ 189
           RY P+LPW QDD GNAYN+LDLQ
Sbjct: 181 RYIPDLPWAQDDTGNAYNILDLQ 199

[Close]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match: gi|359496111|ref|XP_002270146.2| (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 118/198 (59.60%), Postives = 143/198 (72.22%), Query Frame = 1 

Query: 1   MGNVNGREYVDEEDDDENEEEVEEEGLI---------VHEGVAVADGAHILYRPQGVCQK 60
           MGNVNGRE   +     +   VEEEG            H+ +A     H+ Y P     +
Sbjct: 1   MGNVNGRE---DGGGSPSTVGVEEEGGGDGGGGGSGGAHQNMATRLETHVSYHPSSGSPE 60

Query: 61  LLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSLGYEETC-EQSIP 120
           L+G QSPP SP AT+SPL+FTPQ+P+ PL+KPDEML+ + S  MQ S GYE+ C EQ IP
Sbjct: 61  LMG-QSPPHSPRATQSPLMFTPQIPVIPLQKPDEMLITNHS-WMQASSGYEDMCSEQGIP 120

Query: 121 TMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYRFLVDGQWRYSPE 180
           TMITW+YGGKEVA+EGSWD W+ R PLQRSG++FTIMKVLP+GVYQYRF+VDGQWRY P+
Sbjct: 121 TMITWSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYRFIVDGQWRYIPD 180

Query: 181 LPWGQDDVGNAYNVLDLQ 189
           +PW QDD GNAYN+LDLQ
Sbjct: 181 MPWAQDDAGNAYNILDLQ 193

[Close]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match: gi|297735878|emb|CBI18637.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 103/150 (68.67%), Postives = 124/150 (82.67%), Query Frame = 1 

Query: 40  HILYRPQGVCQKLLGGQSPPQSPTATRSPLIFTPQVPLTPLRKPDEMLVISQSQMMQGSL 99
           H+ Y P     +L+G QSPP SP AT+SPL+FTPQ+P+ PL+KPDEML+ + S  MQ S 
Sbjct: 8   HVSYHPSSGSPELMG-QSPPHSPRATQSPLMFTPQIPVIPLQKPDEMLITNHS-WMQASS 67

Query: 100 GYEETC-EQSIPTMITWTYGGKEVAIEGSWDLWRTRTPLQRSGRDFTIMKVLPAGVYQYR 159
           GYE+ C EQ IPTMITW+YGGKEVA+EGSWD W+ R PLQRSG++FTIMKVLP+GVYQYR
Sbjct: 68  GYEDMCSEQGIPTMITWSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYR 127

Query: 160 FLVDGQWRYSPELPWGQDDVGNAYNVLDLQ 189
           F+VDGQWRY P++PW QDD GNAYN+LDLQ
Sbjct: 128 FIVDGQWRYIPDMPWAQDDAGNAYNILDLQ 155

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g06550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
KINB2_ARATH4.4e-5154.92SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN... [more]
KINB1_ARATH1.7e-3147.41SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN... [more]
AAKB2_HUMAN3.9e-1532.865'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV... [more]
AAKB2_RAT8.7e-1541.675'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE... [more]
AAKB2_MOUSE1.1e-1433.335'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV... [more]
BLAST of Cp4.1LG20g06550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYK2_CUCSA7.8e-7976.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181340 PE=4 SV=1[more]
B9SA62_RICCO9.9e-5858.62Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0861290 P... [more]
F6GZ00_VITVI1.7e-5759.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0259g00150 PE=4 SV=... [more]
A0A061GHE1_THECC1.6e-5561.585'-AMP-activated protein kinase beta-2 subunit protein isoform 1 OS=Theobroma ca... [more]
B9IH18_POPTR2.7e-5559.60Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00810g PE=4 SV=2[more]
BLAST of Cp4.1LG20g06550 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16360.32.8e-5160.90 5'-AMP-activated protein kinase beta-2 subunit protein[more]
AT5G21170.28.1e-2746.15 5'-AMP-activated protein kinase beta-2 subunit protein[more]
AT1G09020.12.6e-0931.91 homolog of yeast sucrose nonfermenting 4[more]
BLAST of Cp4.1LG20g06550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127229|ref|XP_008463594.1|5.4e-8180.20PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Cucumis melo][more]
gi|778659706|ref|XP_011654892.1|1.1e-7876.38PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis s... [more]
gi|255563760|ref|XP_002522881.1|1.4e-5758.62PREDICTED: SNF1-related protein kinase regulatory subunit beta-2 [Ricinus commun... [more]
gi|359496111|ref|XP_002270146.2|2.4e-5759.60PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vin... [more]
gi|297735878|emb|CBI18637.3|3.5e-5668.67unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0043562cellular response to nitrogen levels
GO:0009744response to sucrose
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR006828ASC_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0009744 response to sucrose
biological_process GO:0016310 phosphorylation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g06550.1Cp4.1LG20g06550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006828Association with the SNF1 complex (ASC) domainPFAMPF04739AMPKBIcoord: 195..216
score: 2.
IPR014756Immunoglobulin E-setunknownSSF81296E set domainscoord: 108..187
score: 1.21
NoneNo IPR availablePANTHERPTHR103435'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNITcoord: 55..186
score: 6.1
NoneNo IPR availableunknownSSF160219AMPKBI-likecoord: 187..218
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g06550Cucsa.044600Cucumber (Gy14) v1cgycpeB0041
Cp4.1LG20g06550Cucsa.180640Cucumber (Gy14) v1cgycpeB0496
Cp4.1LG20g06550Csa1G181340Cucumber (Chinese Long) v2cpecuB511
Cp4.1LG20g06550MELO3C025522Melon (DHL92) v3.5.1cpemeB472
Cp4.1LG20g06550ClCG01G021250Watermelon (Charleston Gray)cpewcgB460
Cp4.1LG20g06550ClCG01G010780Watermelon (Charleston Gray)cpewcgB457
Cp4.1LG20g06550CSPI01G15600Wild cucumber (PI 183967)cpecpiB511
Cp4.1LG20g06550CSPI06G32810Wild cucumber (PI 183967)cpecpiB528
Cp4.1LG20g06550Lsi01G004990Bottle gourd (USVL1VR-Ls)cpelsiB413
Cp4.1LG20g06550Lsi02G011370Bottle gourd (USVL1VR-Ls)cpelsiB426
Cp4.1LG20g06550MELO3C025522.2Melon (DHL92) v3.6.1cpemedB564
Cp4.1LG20g06550CsaV3_6G048260Cucumber (Chinese Long) v3cpecucB0654
Cp4.1LG20g06550CsaV3_1G015740Cucumber (Chinese Long) v3cpecucB0629
Cp4.1LG20g06550Bhi08G000621Wax gourdcpewgoB0642
Cp4.1LG20g06550CsGy6G032430Cucumber (Gy14) v2cgybcpeB819
Cp4.1LG20g06550CsGy1G015320Cucumber (Gy14) v2cgybcpeB075
Cp4.1LG20g06550Carg25121Silver-seed gourdcarcpeB1444
Cp4.1LG20g06550Carg00512Silver-seed gourdcarcpeB0564
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g06550Cp4.1LG10g10230Cucurbita pepo (Zucchini)cpecpeB089
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g06550Wax gourdcpewgoB0641
Cp4.1LG20g06550Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG20g06550Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g06550Cucurbita maxima (Rimu)cmacpeB438
Cp4.1LG20g06550Cucurbita maxima (Rimu)cmacpeB676
Cp4.1LG20g06550Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g06550Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g06550Cucurbita moschata (Rifu)cmocpeB630
Cp4.1LG20g06550Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g06550Watermelon (Charleston Gray)cpewcgB451
Cp4.1LG20g06550Watermelon (97103) v1cpewmB521
Cp4.1LG20g06550Watermelon (97103) v1cpewmB517
Cp4.1LG20g06550Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g06550Melon (DHL92) v3.6.1cpemedB562