Cp4.1LG20g02360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g02360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDof zinc finger protein
LocationCp4.1LG20 : 1367964 .. 1368428 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAACATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGGCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATTGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACGAACCCATTGGTGTAA

mRNA sequence

ATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAACATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGGCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATTGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACGAACCCATTGGTGTAA

Coding sequence (CDS)

ATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAACATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGGGCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCTTATGGGCTGTCACTCGATGGGAACACCATTGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACGAACCCATTGGTGTAA

Protein sequence

MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV
Homology
[Close]
BLAST of Cp4.1LG20g02360 vs. Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 71/191 (37.17%), Postives = 89/191 (46.60%), Query Frame = 1 

Query: 7   IGMLESHHQ---HHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVG-GLAGDHIAAAGHT 66
           +G LES +      + RPIDF+D+K D +        N D+L MV  G  GDH     H 
Sbjct: 189 VGFLESKYGGLLSQSPRPIDFLDSKFDLM------GVNNDNLVMVNHGSNGDHHHHHNHH 248

Query: 67  LSPSFHGLCSPY--------GLSLDGNTIGQGLM----------IPYDQHEPNEEPN--- 126
           +  + HG+            G+S  GN  G GLM            YD H  N + +   
Sbjct: 249 MGLN-HGVGLNNNNNNGGFNGISTGGNGNGGGLMDISTCQRLMLSNYDHHHYNHQEDHQR 308

Query: 127 ---AMDVKPNTKLLALEWQDQGCSDK--------------VESYGYINGIGSSWNGMMNG 155
               MDVKPN KLL+L+WQ   C                   + GYING+GSSWNG+MNG
Sbjct: 309 VATIMDVKPNPKLLSLDWQQDQCYSNGGGSGGAGKSDGGGYGNGGYINGLGSSWNGLMNG 368

[Close]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match: B9RB20_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1510540 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-35
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLA-----MVGGLAGDH 60
           M++KY+IGMLE+       RPIDFM++K++AIVG++    N D +      MV GL GD 
Sbjct: 161 MESKYSIGMLEN------PRPIDFMESKLEAIVGSSSTSRNYDFMGNSDMGMVSGL-GDQ 220

Query: 61  IAAAGHT------LSPSFHGLCSPYGLSLDGNT-----IGQGLMIPYDQHEPNEEPNAMD 120
           I    H       L+P++HGLCSP+G+S+DG+        Q LM+PYD H+ N+E N +D
Sbjct: 221 INHHHHHHHHHQGLAPNYHGLCSPFGMSMDGSNGTFMETCQRLMLPYD-HQGNDEQNTID 280

Query: 121 VKPNTKLLALEWQDQG--CSDK--VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           VKPN KLL+LEWQ+QG  CS     +++GY+N +GSSW GMMNGYG STTNPLV
Sbjct: 281 VKPNAKLLSLEWQEQGQGCSHDGGKDTFGYLNNLGSSWTGMMNGYGSSTTNPLV 326

[Close]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match: A0A061FV52_THECC (Dof-type zinc finger DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_012077 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.1e-34
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVG---NAHYPTNPDHLAMVGGLAGDHIA 60
           M++KY   +LE+       RPIDFM++K++AIVG   N  +  N + L MVGGL GD   
Sbjct: 267 MESKYN-SLLEN------PRPIDFMESKLEAIVGSSRNYDFMGNGE-LGMVGGL-GD--- 326

Query: 61  AAGHTLSPSFHGLCSPYGLSLDGN-----TIGQGLMIPYDQHEPNEEPNAMDVKPNTKLL 120
             GH L+P+ HGLCSPYG+SLDGN        Q +M+PYD    N + +A+DVKPNTKLL
Sbjct: 327 -MGHGLAPNLHGLCSPYGMSLDGNGGTFLDTCQRIMLPYDA---NADQHAVDVKPNTKLL 386

Query: 121 ALEWQDQGCSDK-VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           +L+WQDQGCSD   ++YGY+N +G SW+GMMN YGPSTTNPLV
Sbjct: 387 SLDWQDQGCSDAGKDTYGYLNNLG-SWSGMMNNYGPSTTNPLV 412

[Close]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match: A0A061FUJ4_THECC (F-box family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_012077 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.1e-34
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVG---NAHYPTNPDHLAMVGGLAGDHIA 60
           M++KY   +LE+       RPIDFM++K++AIVG   N  +  N + L MVGGL GD   
Sbjct: 229 MESKYN-SLLEN------PRPIDFMESKLEAIVGSSRNYDFMGNGE-LGMVGGL-GD--- 288

Query: 61  AAGHTLSPSFHGLCSPYGLSLDGN-----TIGQGLMIPYDQHEPNEEPNAMDVKPNTKLL 120
             GH L+P+ HGLCSPYG+SLDGN        Q +M+PYD    N + +A+DVKPNTKLL
Sbjct: 289 -MGHGLAPNLHGLCSPYGMSLDGNGGTFLDTCQRIMLPYDA---NADQHAVDVKPNTKLL 348

Query: 121 ALEWQDQGCSDK-VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           +L+WQDQGCSD   ++YGY+N +G SW+GMMN YGPSTTNPLV
Sbjct: 349 SLDWQDQGCSDAGKDTYGYLNNLG-SWSGMMNNYGPSTTNPLV 374

[Close]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match: B9IES2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08810g PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 86/163 (52.76%), Postives = 113/163 (69.33%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVG---NAHYPTNPDHLAMVGGLAGDHIA 60
           M++KY IGMLE+       RP+DFMD+K +A+VG   N  +  N D L MV GL GD   
Sbjct: 164 MESKYNIGMLEN------PRPVDFMDSKFEALVGSSRNYDFMGNGD-LGMVSGL-GD--M 223

Query: 61  AAGHTLSPSFHGLCSPYGLSLDGNTIG-----QGLMIPYDQHEPNEEPNAMDVKPNTKLL 120
           +  H L+P++ G CSP+G+SLDGN+       Q LM+PYDQ   +++ N +DVKPNTKLL
Sbjct: 224 SHHHGLAPNYSGYCSPFGMSLDGNSGSFMETCQRLMLPYDQGNDHDQ-NPIDVKPNTKLL 283

Query: 121 ALEWQDQGCSD-KVESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           +L+WQDQGCSD   +++GY+N +G SW GMMNGYG STTN LV
Sbjct: 284 SLDWQDQGCSDVGKDTFGYLNNLG-SWTGMMNGYGSSTTNTLV 314

[Close]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match: M5WDR0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015648mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.5e-33
Identity = 89/167 (53.29%), Postives = 114/167 (68.26%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAH---YPTNPDHLAMVGGLAGDHIA 60
           MD++Y  GMLES++ ++  RPIDFM++K++AIVGNA    +  N   L M+GGLA +   
Sbjct: 169 MDSRYN-GMLESNNNNNP-RPIDFMESKLEAIVGNARNYDFMGNGADLGMMGGLANN--- 228

Query: 61  AAGHTLSPSFHGLCSPYGLSL----DGNTIG--QGLMIPYDQ---HEPNEEPNAMDVKPN 120
             G   S   HGLCSP+G+S     +GN +   Q LM+PYD    H+ +   N MDVKPN
Sbjct: 229 MGGE--SSFHHGLCSPFGMSSFDGQNGNFMDTCQRLMLPYDHQASHDQDHHQNGMDVKPN 288

Query: 121 TKLLALEWQDQGCSDK-VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           TKLL+LEWQDQGCSD   ES+GY+NG+G SW  +MN YGPSTTNPLV
Sbjct: 289 TKLLSLEWQDQGCSDHGKESFGYLNGLG-SWTNVMNNYGPSTTNPLV 327

[Close]
BLAST of Cp4.1LG20g02360 vs. TAIR10
Match: AT5G62940.1 (AT5G62940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-18
Identity = 71/191 (37.17%), Postives = 89/191 (46.60%), Query Frame = 1 

Query: 7   IGMLESHHQ---HHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVG-GLAGDHIAAAGHT 66
           +G LES +      + RPIDF+D+K D +        N D+L MV  G  GDH     H 
Sbjct: 189 VGFLESKYGGLLSQSPRPIDFLDSKFDLM------GVNNDNLVMVNHGSNGDHHHHHNHH 248

Query: 67  LSPSFHGLCSPY--------GLSLDGNTIGQGLM----------IPYDQHEPNEEPN--- 126
           +  + HG+            G+S  GN  G GLM            YD H  N + +   
Sbjct: 249 MGLN-HGVGLNNNNNNGGFNGISTGGNGNGGGLMDISTCQRLMLSNYDHHHYNHQEDHQR 308

Query: 127 ---AMDVKPNTKLLALEWQDQGCSDK--------------VESYGYINGIGSSWNGMMNG 155
               MDVKPN KLL+L+WQ   C                   + GYING+GSSWNG+MNG
Sbjct: 309 VATIMDVKPNPKLLSLDWQQDQCYSNGGGSGGAGKSDGGGYGNGGYINGLGSSWNGLMNG 368

[Close]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match: gi|449469537|ref|XP_004152476.1| (PREDICTED: dof zinc finger protein DOF5.6 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 3.0e-62
Identity = 122/156 (78.21%), Postives = 132/156 (84.62%), Query Frame = 1 

Query: 5   YTIGMLESHHQHHT-TRPIDFMDTKMDAIVGNA--HYPTNPDHLAMVGGLAGDH--IAAA 64
           +TIGMLE+HH HH  TRPIDFMDTKM+AIVGN   HY TN DHLAMVGGL  DH   AAA
Sbjct: 179 FTIGMLETHHHHHQQTRPIDFMDTKMEAIVGNNGHHYTTNTDHLAMVGGLTSDHHITAAA 238

Query: 65  GHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQ 124
               + +FHG+CSPYGLSLDGN I Q +MIPYDQH+ NE+PN MDVKPNTKLLALEWQDQ
Sbjct: 239 AAAAATNFHGICSPYGLSLDGNNINQ-MMIPYDQHQQNEDPNGMDVKPNTKLLALEWQDQ 298

Query: 125 G-CSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           G CS+KVESYGYINGIGSSWNGMMNGYGPSTTNPLV
Sbjct: 299 GGCSEKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 333

[Close]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match: gi|659067246|ref|XP_008438423.1| (PREDICTED: dof zinc finger protein DOF5.6 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 3.9e-62
Identity = 122/157 (77.71%), Postives = 132/157 (84.08%), Query Frame = 1 

Query: 5   YTIGMLESHHQHH--TTRPIDFMDTKMDAIVGNA--HYPTNPDHLAMVGGLAGDH--IAA 64
           +TIGMLE+HH HH   TRPIDFMDTKM+AIVGN   HY TN DHLAMVGGL  DH   AA
Sbjct: 179 FTIGMLETHHHHHHQQTRPIDFMDTKMEAIVGNNGHHYTTNTDHLAMVGGLTSDHHITAA 238

Query: 65  AGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQD 124
           A    + +FHG+CSPYGLSLDGN I Q +MIPYDQH+ NE+PN MDVKPNTKLLALEWQD
Sbjct: 239 AAAAAATNFHGICSPYGLSLDGNNINQ-MMIPYDQHQQNEDPNGMDVKPNTKLLALEWQD 298

Query: 125 QG-CSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           QG CS+KVESYGYINGIGSSWNGMMNGYGPSTTNPLV
Sbjct: 299 QGGCSEKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 334

[Close]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match: gi|223550510|gb|EEF51997.1| (zinc finger protein, putative [Ricinus communis])

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-35
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLA-----MVGGLAGDH 60
           M++KY+IGMLE+       RPIDFM++K++AIVG++    N D +      MV GL GD 
Sbjct: 161 MESKYSIGMLEN------PRPIDFMESKLEAIVGSSSTSRNYDFMGNSDMGMVSGL-GDQ 220

Query: 61  IAAAGHT------LSPSFHGLCSPYGLSLDGNT-----IGQGLMIPYDQHEPNEEPNAMD 120
           I    H       L+P++HGLCSP+G+S+DG+        Q LM+PYD H+ N+E N +D
Sbjct: 221 INHHHHHHHHHQGLAPNYHGLCSPFGMSMDGSNGTFMETCQRLMLPYD-HQGNDEQNTID 280

Query: 121 VKPNTKLLALEWQDQG--CSDK--VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           VKPN KLL+LEWQ+QG  CS     +++GY+N +GSSW GMMNGYG STTNPLV
Sbjct: 281 VKPNAKLLSLEWQEQGQGCSHDGGKDTFGYLNNLGSSWTGMMNGYGSSTTNPLV 326

[Close]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match: gi|1000984751|ref|XP_015579469.1| (PREDICTED: dof zinc finger protein DOF5.6 [Ricinus communis])

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-35
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLA-----MVGGLAGDH 60
           M++KY+IGMLE+       RPIDFM++K++AIVG++    N D +      MV GL GD 
Sbjct: 169 MESKYSIGMLEN------PRPIDFMESKLEAIVGSSSTSRNYDFMGNSDMGMVSGL-GDQ 228

Query: 61  IAAAGHT------LSPSFHGLCSPYGLSLDGNT-----IGQGLMIPYDQHEPNEEPNAMD 120
           I    H       L+P++HGLCSP+G+S+DG+        Q LM+PYD H+ N+E N +D
Sbjct: 229 INHHHHHHHHHQGLAPNYHGLCSPFGMSMDGSNGTFMETCQRLMLPYD-HQGNDEQNTID 288

Query: 121 VKPNTKLLALEWQDQG--CSDK--VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           VKPN KLL+LEWQ+QG  CS     +++GY+N +GSSW GMMNGYG STTNPLV
Sbjct: 289 VKPNAKLLSLEWQEQGQGCSHDGGKDTFGYLNNLGSSWTGMMNGYGSSTTNPLV 334

[Close]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match: gi|590663483|ref|XP_007036231.1| (Dof-type zinc finger DNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-34
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 1   MDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVG---NAHYPTNPDHLAMVGGLAGDHIA 60
           M++KY   +LE+       RPIDFM++K++AIVG   N  +  N + L MVGGL GD   
Sbjct: 267 MESKYN-SLLEN------PRPIDFMESKLEAIVGSSRNYDFMGNGE-LGMVGGL-GD--- 326

Query: 61  AAGHTLSPSFHGLCSPYGLSLDGN-----TIGQGLMIPYDQHEPNEEPNAMDVKPNTKLL 120
             GH L+P+ HGLCSPYG+SLDGN        Q +M+PYD    N + +A+DVKPNTKLL
Sbjct: 327 -MGHGLAPNLHGLCSPYGMSLDGNGGTFLDTCQRIMLPYDA---NADQHAVDVKPNTKLL 386

Query: 121 ALEWQDQGCSDK-VESYGYINGIGSSWNGMMNGYGPSTTNPLV 155
           +L+WQDQGCSD   ++YGY+N +G SW+GMMN YGPSTTNPLV
Sbjct: 387 SLDWQDQGCSDAGKDTYGYLNNLG-SWSGMMNNYGPSTTNPLV 412

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g02360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOF56_ARATH1.1e-1637.17Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2[more]
BLAST of Cp4.1LG20g02360 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RB20_RICCO3.7e-3550.57Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1510540 PE=4 SV=1[more]
A0A061FV52_THECC3.1e-3454.60Dof-type zinc finger DNA-binding family protein isoform 1 OS=Theobroma cacao GN=... [more]
A0A061FUJ4_THECC3.1e-3454.60F-box family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_012077 PE=4 ... [more]
B9IES2_POPTR2.7e-3352.76Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08810g PE=4 SV=1[more]
M5WDR0_PRUPE3.5e-3353.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015648mg PE=4 SV=1[more]
BLAST of Cp4.1LG20g02360 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62940.16.3e-1837.17 Dof-type zinc finger DNA-binding family protein[more]
BLAST of Cp4.1LG20g02360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469537|ref|XP_004152476.1|3.0e-6278.21PREDICTED: dof zinc finger protein DOF5.6 [Cucumis sativus][more]
gi|659067246|ref|XP_008438423.1|3.9e-6277.71PREDICTED: dof zinc finger protein DOF5.6 [Cucumis melo][more]
gi|223550510|gb|EEF51997.1|5.3e-3550.57zinc finger protein, putative [Ricinus communis][more]
gi|1000984751|ref|XP_015579469.1|5.3e-3550.57PREDICTED: dof zinc finger protein DOF5.6 [Ricinus communis][more]
gi|590663483|ref|XP_007036231.1|4.5e-3454.60Dof-type zinc finger DNA-binding family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009888 tissue development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g02360.1Cp4.1LG20g02360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 1..153
score: 2.1
NoneNo IPR availablePANTHERPTHR31992:SF14SUBFAMILY NOT NAMEDcoord: 1..153
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g02360Cucsa.098430Cucumber (Gy14) v1cgycpeB0203
Cp4.1LG20g02360CmaCh13G008890Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g02360CmaCh18G001670Cucurbita maxima (Rimu)cmacpeB439
Cp4.1LG20g02360CmoCh18G001270Cucurbita moschata (Rifu)cmocpeB404
Cp4.1LG20g02360CmoCh13G009180Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g02360Cla000975Watermelon (97103) v1cpewmB512
Cp4.1LG20g02360MELO3C002264Melon (DHL92) v3.5.1cpemeB478
Cp4.1LG20g02360ClCG01G013150Watermelon (Charleston Gray)cpewcgB452
Cp4.1LG20g02360CSPI01G08490Wild cucumber (PI 183967)cpecpiB505
Cp4.1LG20g02360Lsi02G003700Bottle gourd (USVL1VR-Ls)cpelsiB418
Cp4.1LG20g02360MELO3C002264.2Melon (DHL92) v3.6.1cpemedB560
Cp4.1LG20g02360CsaV3_1G008490Cucumber (Chinese Long) v3cpecucB0623
Cp4.1LG20g02360Bhi08G001312Wax gourdcpewgoB0638
Cp4.1LG20g02360CsGy1G008380Cucumber (Gy14) v2cgybcpeB069
Cp4.1LG20g02360Carg07679Silver-seed gourdcarcpeB1401
Cp4.1LG20g02360Carg06725Silver-seed gourdcarcpeB0696
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g02360Cp4.1LG09g10250Cucurbita pepo (Zucchini)cpecpeB049
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g02360Melon (DHL92) v3.6.1cpemedB567
Cp4.1LG20g02360Silver-seed gourdcarcpeB0511
Cp4.1LG20g02360Cucumber (Chinese Long) v3cpecucB0638
Cp4.1LG20g02360Cucumber (Chinese Long) v3cpecucB0644
Cp4.1LG20g02360Wax gourdcpewgoB0625
Cp4.1LG20g02360Cucurbita pepo (Zucchini)cpecpeB350
Cp4.1LG20g02360Cucurbita pepo (Zucchini)cpecpeB440
Cp4.1LG20g02360Cucumber (Gy14) v1cgycpeB0559
Cp4.1LG20g02360Cucurbita maxima (Rimu)cmacpeB083
Cp4.1LG20g02360Cucurbita moschata (Rifu)cmocpeB058
Cp4.1LG20g02360Cucurbita moschata (Rifu)cmocpeB118
Cp4.1LG20g02360Cucurbita moschata (Rifu)cmocpeB696
Cp4.1LG20g02360Wild cucumber (PI 183967)cpecpiB522
Cp4.1LG20g02360Cucumber (Chinese Long) v2cpecuB505
Cp4.1LG20g02360Cucumber (Chinese Long) v2cpecuB520
Cp4.1LG20g02360Bottle gourd (USVL1VR-Ls)cpelsiB431
Cp4.1LG20g02360Watermelon (Charleston Gray)cpewcgB474
Cp4.1LG20g02360Watermelon (97103) v1cpewmB528
Cp4.1LG20g02360Watermelon (97103) v1cpewmB502
Cp4.1LG20g02360Melon (DHL92) v3.5.1cpemeB467
Cp4.1LG20g02360Melon (DHL92) v3.5.1cpemeB482
Cp4.1LG20g02360Cucumber (Gy14) v2cgybcpeB085