Cp4.1LG19g06770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g06770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L34
LocationCp4.1LG19 : 7294786 .. 7296086 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGATCAGAACAACCATATCAGGATAAGGCTCCTTCTTCCTCCGAACCAAAATTAGCTGAAAGGGGGAAACACAGTCAGTCTAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCGACCGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCTTTCTCAGGTGAGGGATTCTTTCACTCCAATTTATGAATTAGTTCGAGTGATTTAATGATTTCGCATTATTGCTTCCTCATTTGCCAATGTAATGGAGTTTATAGGAAGTAGTTCGCTGAAGTATTTATTTGCTGTATTGTGCGTTTATTACTTTCTAGGGCCCTTGCATTTCGAATTGTATACGTTCAAGGTCGTTGGGTTTGATAACTTCATGCTTGCATTCGATTTGTTATGAATTCTCTTGTATTTTCCTTTTTATTCTTTCCGGTAACCGAATTGTGAGTGAATTATCCGTTGTGTTTTACTTGTTGAGGGGAAAGACTATGCCCCGCTTCCTGCAACATTGCGGCGCTTCTCTAGCGGTAGTTAGTTCTGTTGATATAGATTTTGTAACATTAACTTTATGGGAAAGAACTACTCATTTGCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCATTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATTATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTGCAAATTACTGGATTGGACTAGCTTATGTGATTCATACTTTCCCATTGCTCATTTGAAAATCTCCTCTGAACTGGAATATATACACTGATGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTAGGTCTGAAATCTGAATCGTATCAGTTTCTC

mRNA sequence

GCGATCAGAACAACCATATCAGGATAAGGCTCCTTCTTCCTCCGAACCAAAATTAGCTGAAAGGGGGAAACACAGTCAGTCTAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCGACCGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCTTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCATTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATTATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTGCAAATTACTGGATTGGACTAGCTTATGTGATTCATACTTTCCCATTGCTCATTTGAAAATCTCCTCTGAACTGGAATATATACACTGATGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTAGGTCTGAAATCTGAATCGTATCAGTTTCTC

Coding sequence (CDS)

ATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCGACCGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCTTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCATTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAA

Protein sequence

MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Homology
[Close]
BLAST of Cp4.1LG19g06770 vs. Swiss-Prot
Match: RK34_SPIOL (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-36
Identity = 100/153 (65.36%), Postives = 119/153 (77.78%), Query Frame = 1 

Query: 1   MAAISVISSLCVSTV--RVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFL-PSSS 60
           MA +S++S+   + +  R PSASL F TGSR+++  ++  N  SAR G LHCSFL PSSS
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSF-NGGSARSGSLHCSFLAPSSS 60

Query: 61  LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRR 120
           LS  S+FSGLSLGLD +   GV   + R  VVRAGKAALC TKR+RSRKSLARTHGFR R
Sbjct: 61  LS--SNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLR 120

Query: 121 MRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           M TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 MSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]
BLAST of Cp4.1LG19g06770 vs. Swiss-Prot
Match: RK34_ARATH (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-33
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 1 

Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL +    SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSLTS----SASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

[Close]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match: A0A0A0KI92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-57
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1 

Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match: A0A061GF34_THECC (50S ribosomal protein L34 OS=Theobroma cacao GN=TCM_029722 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 1 

Query: 1   MAAISVISS---LCVSTVR--VPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLP 60
           MA++SVI+S   L   ++R  +PSASL   TGSR   SIS N  NN  A   LLHCSFLP
Sbjct: 1   MASMSVITSPQWLTAKSIRTQIPSASLALLTGSRGRISISPNAENNPKACSSLLHCSFLP 60

Query: 61  SSS--LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTH 120
           SSS  +SC SSF+GLSLG+D+S   GV   KRR LVVRAGKAALCQTKRNRSRKSLARTH
Sbjct: 61  SSSSSVSCPSSFAGLSLGMDFSSNNGVRNEKRRGLVVRAGKAALCQTKRNRSRKSLARTH 120

Query: 121 GFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           GFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNP+SGKR+
Sbjct: 121 GFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKRS 158

[Close]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match: B9S989_RICCO (50S ribosomal protein L34, chloroplast, putative OS=Ricinus communis GN=RCOM_1014630 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.8e-41
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 1 

Query: 7   ISSLCVSTVRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFS 66
           +SS    T R PSASL  STG+R  +  S+N  +N+++R GLLHCSFL +SSLS  SSFS
Sbjct: 17  MSSRSQQTARCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFS 76

Query: 67  GLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRA 126
           GLSLGLD +   GV +G+   LVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTT+GRA
Sbjct: 77  GLSLGLDLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRA 136

Query: 127 VLKRRRAKGRKVLCTKSNPSSGK 149
           VLKRRRAKGRKVLCTKSNP+SGK
Sbjct: 137 VLKRRRAKGRKVLCTKSNPNSGK 159

[Close]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match: W9QWL4_9ROSA (50S ribosomal protein L34 OS=Morus notabilis GN=L484_001475 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 107/154 (69.48%), Postives = 122/154 (79.22%), Query Frame = 1 

Query: 1   MAAISVIS-----SLCVSTVRVPSASLVFSTGSR-SSSISLNTANNASARPGLLHCSFLP 60
           MA+IS ++     S   S  +  SASL F TGSR ++S+S+N AN  +AR GLLHCSFLP
Sbjct: 1   MASISAVTLSPWLSSRGSRAQTSSASLTFLTGSRRTTSLSMNAANVLNARSGLLHCSFLP 60

Query: 61  SSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL   SS SGLSLGLD +  +G+G+G RR LVVRAGK ALC TKRNRSRKSLARTHGF
Sbjct: 61  SSSLGFPSSVSGLSLGLDLNSNVGIGKGNRRGLVVRAGKPALCLTKRNRSRKSLARTHGF 120

Query: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK 149
           RRRMRTT+GRAVLKRRRAKGR+VLCTKS PSSGK
Sbjct: 121 RRRMRTTSGRAVLKRRRAKGRRVLCTKSYPSSGK 154

[Close]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match: M5WHG7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011477mg PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.3e-40
Identity = 103/150 (68.67%), Postives = 118/150 (78.67%), Query Frame = 1 

Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           M+    +SS  +     PSASL F TGSR+S  S++  N A+ R  LLHCSF+PSSSLS 
Sbjct: 61  MSLSPCLSSRGIQQASTPSASLTFLTGSRTSKSSVSL-NAATPRSSLLHCSFVPSSSLSF 120

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
            SSFSGLSLGLD S  IGVG+ +   LVV+AGKAALC TKRNRSRKSLARTHGFRRRMRT
Sbjct: 121 PSSFSGLSLGLDLSSSIGVGRRRSSGLVVKAGKAALCLTKRNRSRKSLARTHGFRRRMRT 180

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           T GRA+LKRRRAKGRK+LCTK+NP+SGKRA
Sbjct: 181 TGGRAMLKRRRAKGRKILCTKTNPNSGKRA 209

[Close]
BLAST of Cp4.1LG19g06770 vs. TAIR10
Match: AT1G29070.1 (AT1G29070.1 Ribosomal protein L34)

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 1 

Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL +    SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSLTS----SASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

[Close]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match: gi|659078479|ref|XP_008439748.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 5.7e-58
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 1 

Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match: gi|449433766|ref|XP_004134668.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1 

Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match: gi|590623778|ref|XP_007025416.1| (50S ribosomal protein L34 [Theobroma cacao])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 1 

Query: 1   MAAISVISS---LCVSTVR--VPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLP 60
           MA++SVI+S   L   ++R  +PSASL   TGSR   SIS N  NN  A   LLHCSFLP
Sbjct: 1   MASMSVITSPQWLTAKSIRTQIPSASLALLTGSRGRISISPNAENNPKACSSLLHCSFLP 60

Query: 61  SSS--LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTH 120
           SSS  +SC SSF+GLSLG+D+S   GV   KRR LVVRAGKAALCQTKRNRSRKSLARTH
Sbjct: 61  SSSSSVSCPSSFAGLSLGMDFSSNNGVRNEKRRGLVVRAGKAALCQTKRNRSRKSLARTH 120

Query: 121 GFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           GFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNP+SGKR+
Sbjct: 121 GFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKRS 158

[Close]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match: gi|255563108|ref|XP_002522558.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Ricinus communis])

HSP 1 Score: 175.3 bits (443), Expect = 8.3e-41
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 1 

Query: 7   ISSLCVSTVRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFS 66
           +SS    T R PSASL  STG+R  +  S+N  +N+++R GLLHCSFL +SSLS  SSFS
Sbjct: 17  MSSRSQQTARCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFS 76

Query: 67  GLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRA 126
           GLSLGLD +   GV +G+   LVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTT+GRA
Sbjct: 77  GLSLGLDLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRA 136

Query: 127 VLKRRRAKGRKVLCTKSNPSSGK 149
           VLKRRRAKGRKVLCTKSNP+SGK
Sbjct: 137 VLKRRRAKGRKVLCTKSNPNSGK 159

[Close]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match: gi|703081518|ref|XP_010091712.1| (50S ribosomal protein L34 [Morus notabilis])

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 107/154 (69.48%), Postives = 122/154 (79.22%), Query Frame = 1 

Query: 1   MAAISVIS-----SLCVSTVRVPSASLVFSTGSR-SSSISLNTANNASARPGLLHCSFLP 60
           MA+IS ++     S   S  +  SASL F TGSR ++S+S+N AN  +AR GLLHCSFLP
Sbjct: 1   MASISAVTLSPWLSSRGSRAQTSSASLTFLTGSRRTTSLSMNAANVLNARSGLLHCSFLP 60

Query: 61  SSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL   SS SGLSLGLD +  +G+G+G RR LVVRAGK ALC TKRNRSRKSLARTHGF
Sbjct: 61  SSSLGFPSSVSGLSLGLDLNSNVGIGKGNRRGLVVRAGKPALCLTKRNRSRKSLARTHGF 120

Query: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK 149
           RRRMRTT+GRAVLKRRRAKGR+VLCTKS PSSGK
Sbjct: 121 RRRMRTTSGRAVLKRRRAKGRRVLCTKSYPSSGK 154

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g06770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK34_SPIOL2.8e-3665.3650S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1[more]
RK34_ARATH6.4e-3368.8950S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 S... [more]
BLAST of Cp4.1LG19g06770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI92_CUCSA2.6e-5787.10Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519510 PE=3 SV=1[more]
A0A061GF34_THECC1.2e-4171.5250S ribosomal protein L34 OS=Theobroma cacao GN=TCM_029722 PE=3 SV=1[more]
B9S989_RICCO5.8e-4172.0350S ribosomal protein L34, chloroplast, putative OS=Ricinus communis GN=RCOM_101... [more]
W9QWL4_9ROSA1.3e-4069.4850S ribosomal protein L34 OS=Morus notabilis GN=L484_001475 PE=3 SV=1[more]
M5WHG7_PRUPE8.3e-4068.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011477mg PE=3 SV=1[more]
BLAST of Cp4.1LG19g06770 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G29070.13.6e-3468.89 Ribosomal protein L34[more]
BLAST of Cp4.1LG19g06770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078479|ref|XP_008439748.1|5.7e-5888.39PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo][more]
gi|449433766|ref|XP_004134668.1|3.7e-5787.10PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis sativus][more]
gi|590623778|ref|XP_007025416.1|1.7e-4171.5250S ribosomal protein L34 [Theobroma cacao][more]
gi|255563108|ref|XP_002522558.1|8.3e-4172.03PREDICTED: 50S ribosomal protein L34, chloroplastic [Ricinus communis][more]
gi|703081518|ref|XP_010091712.1|1.8e-4069.4850S ribosomal protein L34 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000271Ribosomal_L34
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g06770.1Cp4.1LG19g06770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34PRODOMPD003101coord: 102..138
score: 1.0
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 92..140
score: 12
IPR000271Ribosomal protein L34PANTHERPTHR14503FAMILY NOT NAMEDcoord: 8..142
score: 3.1
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 105..139
score: 1.0
IPR000271Ribosomal protein L34TIGRFAMsTIGR01030TIGR01030coord: 105..138
score: 3.3
NoneNo IPR availablePANTHERPTHR14503:SF350S RIBOSOMAL PROTEIN L34, CHLOROPLASTICcoord: 8..142
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g06770Cucsa.046900Cucumber (Gy14) v1cgycpeB0039
Cp4.1LG19g06770CmaCh07G001930Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g06770CmoCh03G013180Cucurbita moschata (Rifu)cmocpeB618
Cp4.1LG19g06770CmoCh07G001880Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g06770Cla009686Watermelon (97103) v1cpewmB482
Cp4.1LG19g06770Csa6G519510Cucumber (Chinese Long) v2cpecuB503
Cp4.1LG19g06770MELO3C007218Melon (DHL92) v3.5.1cpemeB457
Cp4.1LG19g06770ClCG01G023670Watermelon (Charleston Gray)cpewcgB425
Cp4.1LG19g06770CSPI06G35320Wild cucumber (PI 183967)cpecpiB503
Cp4.1LG19g06770Lsi01G002490Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g06770MELO3C007218.2Melon (DHL92) v3.6.1cpemedB540
Cp4.1LG19g06770CsaV3_6G050830Cucumber (Chinese Long) v3cpecucB0618
Cp4.1LG19g06770Bhi03G000233Wax gourdcpewgoB0607
Cp4.1LG19g06770CsGy6G034840Cucumber (Gy14) v2cgybcpeB810
Cp4.1LG19g06770Carg15339Silver-seed gourdcarcpeB0773
Cp4.1LG19g06770Carg18213Silver-seed gourdcarcpeB0748
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g06770Cucurbita pepo (Zucchini)cpecpeB043
Cp4.1LG19g06770Cucurbita pepo (Zucchini)cpecpeB083
Cp4.1LG19g06770Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG19g06770Cucumber (Gy14) v1cgycpeB0588
Cp4.1LG19g06770Cucurbita maxima (Rimu)cmacpeB232
Cp4.1LG19g06770Cucurbita maxima (Rimu)cmacpeB437
Cp4.1LG19g06770Cucurbita maxima (Rimu)cmacpeB667
Cp4.1LG19g06770Cucurbita moschata (Rifu)cmocpeB199
Cp4.1LG19g06770Cucurbita moschata (Rifu)cmocpeB402
Cp4.1LG19g06770Wild cucumber (PI 183967)cpecpiB476
Cp4.1LG19g06770Cucumber (Chinese Long) v2cpecuB475
Cp4.1LG19g06770Bottle gourd (USVL1VR-Ls)cpelsiB402
Cp4.1LG19g06770Watermelon (Charleston Gray)cpewcgB431
Cp4.1LG19g06770Watermelon (97103) v1cpewmB478
Cp4.1LG19g06770Melon (DHL92) v3.5.1cpemeB438
Cp4.1LG19g06770Cucumber (Gy14) v2cgybcpeB068
Cp4.1LG19g06770Melon (DHL92) v3.6.1cpemedB517
Cp4.1LG19g06770Silver-seed gourdcarcpeB0214
Cp4.1LG19g06770Silver-seed gourdcarcpeB1122
Cp4.1LG19g06770Cucumber (Chinese Long) v3cpecucB0587
Cp4.1LG19g06770Wax gourdcpewgoB0619