CmoCh07G001880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G001880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L34
Location	Cmo_Chr07 : 965921 .. 967269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATGGGCTTTAACGAGCCCATATGGATCTTGAATTGGGCCTGTTCGGATGCGGTCGTAATAAGGGATCGTGAGAAACCCCACGCGATCAGAACAACCATATCAGGATAAGGCTCTTTCTTCCTCCGAACCAACATTAGCTGAAAGGGGGAAACACAGTCAGTCCAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGTGAGGGATTCCTTCACTCCAATTTATGTATTGGTTCGAGTGATTTAATGATTTCGCATTATTGCTTGCTCATTTGCCAATGTAATGGAGTTTATAGGAAGTAGTTCGCTGAAGTATTTATTTGCTGTATTGTGCGTTTATTACTTTCTAGGGCCCTTGCATTTCGAATTGTATACGTTCAAGGTCGCTGGGTTTGATAACTTCATGCTTGCATTCGATTTGTTATGAATTCTCTTGTATTTTCCTTTTTATTCTTCCCGGTAACCGAATTGTAAGCGAATTATCCGTTGTGTTTTACTTGTTGAGGGGAAAGACTATGCCCCGCTTCCTGCAACATTGCGGCGCCTTCTAGCGATACTTAGTTCTGTTGATATAGATTTTGTAACATTAACTTTATGCGAAAGAAGTACTAATTTGCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATGATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTCGACTAGCTTATGTGATTCATACTTTCCCATTGTTCATTTGAAAATCTCCTCTGAACTGGAATATGTACTCTGAGGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTGGGTCTGAAA

mRNA sequence

TATAATGGGCTTTAACGAGCCCATATGGATCTTGAATTGGGCCTGTTCGGATGCGGTCGTAATAAGGGATCGTGAGAAACCCCACGCGATCAGAACAACCATATCAGGATAAGGCTCTTTCTTCCTCCGAACCAACATTAGCTGAAAGGGGGAAACACAGTCAGTCCAACAATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTATTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATATTATATGATGCTTTGTTATTGATTCATTTGAATGTTCCTTAACTCAGATTATCAATGTTAAATTCAAATTACTGGATTCGACTAGCTTATGTGATTCATACTTTCCCATTGTTCATTTGAAAATCTCCTCTGAACTGGAATATGTACTCTGAGGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTGGGTCTGAAA

Coding sequence (CDS)

ATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCCACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCCTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTCGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCTGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAA

Homology

[Close]

BLAST of CmoCh07G001880 vs. Swiss-Prot
Match: RK34_SPIOL (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-36
Identity = 100/153 (65.36%), Postives = 119/153 (77.78%), Query Frame = 1


Query: 1   MAAISVISSLCVSTV--RVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFL-PSSS 60
           MA +S++S+   + +  R PSASL F TGSR+++  ++  N  SAR G LHCSFL PSSS
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSF-NGGSARSGSLHCSFLAPSSS 60

Query: 61  LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRR 120
           LS  S+FSGLSLGLD +   GV   + R  VVRAGKAALC TKR+RSRKSLARTHGFR R
Sbjct: 61  LS--SNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLR 120

Query: 121 MRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           M TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 MSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150

[Close]

BLAST of CmoCh07G001880 vs. Swiss-Prot
Match: RK34_ARATH (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-33
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 1


Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL +    SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSLTS----SASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

[Close]

BLAST of CmoCh07G001880 vs. TrEMBL
Match: A0A0A0KI92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-57
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. TrEMBL
Match: A0A061GF34_THECC (50S ribosomal protein L34 OS=Theobroma cacao GN=TCM_029722 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 1   MAAISVISS---LCVSTVR--VPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLP 60
           MA++SVI+S   L   ++R  +PSASL   TGSR   SIS N  NN  A   LLHCSFLP
Sbjct: 1   MASMSVITSPQWLTAKSIRTQIPSASLALLTGSRGRISISPNAENNPKACSSLLHCSFLP 60

Query: 61  SSS--LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTH 120
           SSS  +SC SSF+GLSLG+D+S   GV   KRR LVVRAGKAALCQTKRNRSRKSLARTH
Sbjct: 61  SSSSSVSCPSSFAGLSLGMDFSSNNGVRNEKRRGLVVRAGKAALCQTKRNRSRKSLARTH 120

Query: 121 GFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           GFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNP+SGKR+
Sbjct: 121 GFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKRS 158

[Close]

BLAST of CmoCh07G001880 vs. TrEMBL
Match: B9S989_RICCO (50S ribosomal protein L34, chloroplast, putative OS=Ricinus communis GN=RCOM_1014630 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.8e-41
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 7   ISSLCVSTVRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFS 66
           +SS    T R PSASL  STG+R  +  S+N  +N+++R GLLHCSFL +SSLS  SSFS
Sbjct: 17  MSSRSQQTARCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFS 76

Query: 67  GLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRA 126
           GLSLGLD +   GV +G+   LVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTT+GRA
Sbjct: 77  GLSLGLDLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRA 136

Query: 127 VLKRRRAKGRKVLCTKSNPSSGK 149
           VLKRRRAKGRKVLCTKSNP+SGK
Sbjct: 137 VLKRRRAKGRKVLCTKSNPNSGK 159

[Close]

BLAST of CmoCh07G001880 vs. TrEMBL
Match: W9QWL4_9ROSA (50S ribosomal protein L34 OS=Morus notabilis GN=L484_001475 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 107/154 (69.48%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MAAISVIS-----SLCVSTVRVPSASLVFSTGSR-SSSISLNTANNASARPGLLHCSFLP 60
           MA+IS ++     S   S  +  SASL F TGSR ++S+S+N AN  +AR GLLHCSFLP
Sbjct: 1   MASISAVTLSPWLSSRGSRAQTSSASLTFLTGSRRTTSLSMNAANVLNARSGLLHCSFLP 60

Query: 61  SSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL   SS SGLSLGLD +  +G+G+G RR LVVRAGK ALC TKRNRSRKSLARTHGF
Sbjct: 61  SSSLGFPSSVSGLSLGLDLNSNVGIGKGNRRGLVVRAGKPALCLTKRNRSRKSLARTHGF 120

Query: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK 149
           RRRMRTT+GRAVLKRRRAKGR+VLCTKS PSSGK
Sbjct: 121 RRRMRTTSGRAVLKRRRAKGRRVLCTKSYPSSGK 154

[Close]

BLAST of CmoCh07G001880 vs. TrEMBL
Match: M5WHG7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011477mg PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.3e-40
Identity = 103/150 (68.67%), Postives = 118/150 (78.67%), Query Frame = 1


Query: 1   MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSC 60
           M+    +SS  +     PSASL F TGSR+S  S++  N A+ R  LLHCSF+PSSSLS 
Sbjct: 61  MSLSPCLSSRGIQQASTPSASLTFLTGSRTSKSSVSL-NAATPRSSLLHCSFVPSSSLSF 120

Query: 61  KSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRT 120
            SSFSGLSLGLD S  IGVG+ +   LVV+AGKAALC TKRNRSRKSLARTHGFRRRMRT
Sbjct: 121 PSSFSGLSLGLDLSSSIGVGRRRSSGLVVKAGKAALCLTKRNRSRKSLARTHGFRRRMRT 180

Query: 121 TNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           T GRA+LKRRRAKGRK+LCTK+NP+SGKRA
Sbjct: 181 TGGRAMLKRRRAKGRKILCTKTNPNSGKRA 209

[Close]

BLAST of CmoCh07G001880 vs. TAIR10
Match: AT1G29070.1 (AT1G29070.1 Ribosomal protein L34)

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 1


Query: 17  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPK 76
           VPSASL   TG R SS SL +    SA   LLHCSFL SS +S  S FSGLS+  D S +
Sbjct: 28  VPSASLSLRTGCRRSSSSLTS----SASSQLLHCSFL-SSPVSLASPFSGLSIAFDLSSQ 87

Query: 77  I-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGR 136
             G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTT+GRA +KRRRAKGR
Sbjct: 88  TSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGR 147

Query: 137 KVLCTKSNPSSGKRA 151
             LC KSNPSSGKRA
Sbjct: 148 WNLCPKSNPSSGKRA 157

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: gi|659078479|ref|XP_008439748.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 5.7e-58
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 1


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPS 60
           MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSSPWVSNGAIAVRVPSASLVISTGSRGSCSVSLNTANNTSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: gi|449433766|ref|XP_004134668.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-57
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1


Query: 1   MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPS 60
           MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPS
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFLPS 60

Query: 61  SSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR 120
           SSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAALCQTKRNRSRKSLARTHGFR
Sbjct: 61  SSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFR 120

Query: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Sbjct: 121 RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: gi|590623778|ref|XP_007025416.1| (50S ribosomal protein L34 [Theobroma cacao])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 1   MAAISVISS---LCVSTVR--VPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLP 60
           MA++SVI+S   L   ++R  +PSASL   TGSR   SIS N  NN  A   LLHCSFLP
Sbjct: 1   MASMSVITSPQWLTAKSIRTQIPSASLALLTGSRGRISISPNAENNPKACSSLLHCSFLP 60

Query: 61  SSS--LSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTH 120
           SSS  +SC SSF+GLSLG+D+S   GV   KRR LVVRAGKAALCQTKRNRSRKSLARTH
Sbjct: 61  SSSSSVSCPSSFAGLSLGMDFSSNNGVRNEKRRGLVVRAGKAALCQTKRNRSRKSLARTH 120

Query: 121 GFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 151
           GFRRRMRTT+GRAVLKRRRAKGRKVLCTKSNP+SGKR+
Sbjct: 121 GFRRRMRTTSGRAVLKRRRAKGRKVLCTKSNPNSGKRS 158

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: gi|255563108|ref|XP_002522558.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Ricinus communis])

HSP 1 Score: 175.3 bits (443), Expect = 8.3e-41
Identity = 103/143 (72.03%), Postives = 117/143 (81.82%), Query Frame = 1


Query: 7   ISSLCVSTVRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFS 66
           +SS    T R PSASL  STG+R  +  S+N  +N+++R GLLHCSFL +SSLS  SSFS
Sbjct: 17  MSSRSQQTARCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFS 76

Query: 67  GLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRA 126
           GLSLGLD +   GV +G+   LVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTT+GRA
Sbjct: 77  GLSLGLDLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRA 136

Query: 127 VLKRRRAKGRKVLCTKSNPSSGK 149
           VLKRRRAKGRKVLCTKSNP+SGK
Sbjct: 137 VLKRRRAKGRKVLCTKSNPNSGK 159

[Close]

BLAST of CmoCh07G001880 vs. NCBI nr
Match: gi|703081518|ref|XP_010091712.1| (50S ribosomal protein L34 [Morus notabilis])

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 107/154 (69.48%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MAAISVIS-----SLCVSTVRVPSASLVFSTGSR-SSSISLNTANNASARPGLLHCSFLP 60
           MA+IS ++     S   S  +  SASL F TGSR ++S+S+N AN  +AR GLLHCSFLP
Sbjct: 1   MASISAVTLSPWLSSRGSRAQTSSASLTFLTGSRRTTSLSMNAANVLNARSGLLHCSFLP 60

Query: 61  SSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGF 120
           SSSL   SS SGLSLGLD +  +G+G+G RR LVVRAGK ALC TKRNRSRKSLARTHGF
Sbjct: 61  SSSLGFPSSVSGLSLGLDLNSNVGIGKGNRRGLVVRAGKPALCLTKRNRSRKSLARTHGF 120

Query: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGK 149
           RRRMRTT+GRAVLKRRRAKGR+VLCTKS PSSGK
Sbjct: 121 RRRMRTTSGRAVLKRRRAKGRRVLCTKSYPSSGK 154

The following BLAST results are available for this feature:

BLAST of CmoCh07G001880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK34_SPIOL	2.8e-36	65.36	50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1	[more]
RK34_ARATH	6.4e-33	68.89	50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 S...	[more]

BLAST of CmoCh07G001880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI92_CUCSA	2.6e-57	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519510 PE=3 SV=1	[more]
A0A061GF34_THECC	1.2e-41	71.52	50S ribosomal protein L34 OS=Theobroma cacao GN=TCM_029722 PE=3 SV=1	[more]
B9S989_RICCO	5.8e-41	72.03	50S ribosomal protein L34, chloroplast, putative OS=Ricinus communis GN=RCOM_101...	[more]
W9QWL4_9ROSA	1.3e-40	69.48	50S ribosomal protein L34 OS=Morus notabilis GN=L484_001475 PE=3 SV=1	[more]
M5WHG7_PRUPE	8.3e-40	68.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011477mg PE=3 SV=1	[more]

BLAST of CmoCh07G001880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29070.1	3.6e-34	68.89	Ribosomal protein L34	[more]

BLAST of CmoCh07G001880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078479\|ref\|XP_008439748.1\|	5.7e-58	88.39	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]	[more]
gi\|449433766\|ref\|XP_004134668.1\|	3.7e-57	87.10	PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis sativus]	[more]
gi\|590623778\|ref\|XP_007025416.1\|	1.7e-41	71.52	50S ribosomal protein L34 [Theobroma cacao]	[more]
gi\|255563108\|ref\|XP_002522558.1\|	8.3e-41	72.03	PREDICTED: 50S ribosomal protein L34, chloroplastic [Ricinus communis]	[more]
gi\|703081518\|ref\|XP_010091712.1\|	1.8e-40	69.48	50S ribosomal protein L34 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000271	Ribosomal_L34

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G001880.1	CmoCh07G001880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000271	Ribosomal protein L34	PRODOM	PD003101		coord: 102..138 score: 1.0
IPR000271	Ribosomal protein L34	HAMAP	MF_00391	Ribosomal_L34	coord: 92..140 score: 12
IPR000271	Ribosomal protein L34	PANTHER	PTHR14503	FAMILY NOT NAMED	coord: 8..142 score: 3.1
IPR000271	Ribosomal protein L34	PFAM	PF00468	Ribosomal_L34	coord: 105..139 score: 1.0
IPR000271	Ribosomal protein L34	TIGRFAMs	TIGR01030	TIGR01030	coord: 105..138 score: 3.3
None	No IPR available	PANTHER	PTHR14503:SF3	50S RIBOSOMAL PROTEIN L34, CHLOROPLASTIC	coord: 8..142 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G001880	Cucsa.046900	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G001880	CmaCh07G001930	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G001880	Cla009686	Watermelon (97103) v1	cmowmB816
CmoCh07G001880	Csa6G519510	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G001880	MELO3C007218	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G001880	ClCG01G023670	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G001880	CSPI06G35320	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G001880	Lsi01G002490	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G001880	Cp4.1LG19g06770	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G001880	MELO3C007218.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G001880	CsaV3_6G050830	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G001880	Cla97C01G023610	Watermelon (97103) v2	cmowmbB849
CmoCh07G001880	Bhi03G000233	Wax gourd	cmowgoB1051
CmoCh07G001880	CsGy6G034840	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G001880	Carg15339	Silver-seed gourd	carcmoB0745
CmoCh07G001880	Carg18213	Silver-seed gourd	carcmoB0717

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G001880	CmoCh03G013180	Cucurbita moschata (Rifu)	cmocmoB459

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G001880	Cucumber (Chinese Long) v3	cmocucB0988
CmoCh07G001880	Watermelon (97103) v2	cmowmbB857
CmoCh07G001880	Wax gourd	cmowgoB1074
CmoCh07G001880	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh07G001880	Cucurbita moschata (Rifu)	cmocmoB351
CmoCh07G001880	Cucurbita moschata (Rifu)	cmocmoB399
CmoCh07G001880	Cucumber (Gy14) v1	cgycmoB0620
CmoCh07G001880	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G001880	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G001880	Wild cucumber (PI 183967)	cmocpiB844
CmoCh07G001880	Cucumber (Chinese Long) v2	cmocuB834
CmoCh07G001880	Melon (DHL92) v3.5.1	cmomeB771
CmoCh07G001880	Watermelon (Charleston Gray)	cmowcgB760
CmoCh07G001880	Watermelon (97103) v1	cmowmB809
CmoCh07G001880	Cucurbita pepo (Zucchini)	cmocpeB800
CmoCh07G001880	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G001880	Cucurbita pepo (Zucchini)	cmocpeB811
CmoCh07G001880	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G001880	Bottle gourd (USVL1VR-Ls)	cmolsiB783
CmoCh07G001880	Cucumber (Gy14) v2	cgybcmoB132
CmoCh07G001880	Melon (DHL92) v3.6.1	cmomedB875
CmoCh07G001880	Silver-seed gourd	carcmoB0210
CmoCh07G001880	Silver-seed gourd	carcmoB1083