Cp4.1LG19g03510 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g03510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWRKY transcription factor
LocationCp4.1LG19 : 3007028 .. 3007639 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACCTTCAATTTCTTCTTTTTCTCCTCCCACATCCGAAGATGACCTCGTCGACCTCACGAGCCTTCTCGGCAACGACACCTCATCGCTCTTCCGCCTCCTCTCTCAAGACACCGGCGACGATCGAGCCATTAATCTCCTTGTTCCTGACCTGACCTACTTCCAACCAACAATAGAGGATATTAAGAACGCCCTCTTGACGACCCCCATATCAAAAGATTTGCAGTTTAGTGCCCACATTTTTTCACGCTTATATTCGTAGTCACGATTTCTTTTTATATTCTAATATTCTATTTTTAATTTTTTTAATTTTGTGAATAAAAATAGGAGCTAGTACAGGTGCTCGAACCCAAGATCTGGTGCAAAGAAGCAAGTGGAAAGGTCCATTGAAGATCCAGAAACTTTCATCATCACCTACGAAGGCCTCCACCTCCACTTTGCTTACCCATTCTTTCTAATGGGCCAAACCCAACAGGCCCAATCTTCAACCAAGAAGCCCAAGACGATTGACCCAGAGCCCAAAGCCCAAAGCCCAAAGCCCAAAGAAGCCCAGATTTCCTCACTCCCGAAGCAACTGGCCCACAAGGGTTGCTCGAGGATATGGTCCCATGGA

mRNA sequence

GTACCTTCAATTTCTTCTTTTTCTCCTCCCACATCCGAAGATGACCTCGTCGACCTCACGAGCCTTCTCGGCAACGACACCTCATCGCTCTTCCGCCTCCTCTCTCAAGACACCGGCGACGATCGAGCCATTAATCTCCTTGTTCCTGACCTGACCTACTTCCAACCAACAATAGAGGATATTAAGAACGCCCTCTTGACGACCCCCATATCAAAAGATTTGCAGTTTAGTGCCCACATTTTTTCACGCTTATATTCGTGCTCGAACCCAAGATCTGGTGCAAAGAAGCAAGTGGAAAGGTCCATTGAAGATCCAGAAACTTTCATCATCACCTACGAAGGCCTCCACCTCCACTTTGCTTACCCATTCTTTCTAATGGGCCAAACCCAACAGGCCCAATCTTCAACCAAGAAGCCCAAGACGATTGACCCAGAGCCCAAAGCCCAAAGCCCAAAGCCCAAAGAAGCCCAGATTTCCTCACTCCCGAAGCAACTGGCCCACAAGGGTTGCTCGAGGATATGGTCCCATGGA

Coding sequence (CDS)

GTACCTTCAATTTCTTCTTTTTCTCCTCCCACATCCGAAGATGACCTCGTCGACCTCACGAGCCTTCTCGGCAACGACACCTCATCGCTCTTCCGCCTCCTCTCTCAAGACACCGGCGACGATCGAGCCATTAATCTCCTTGTTCCTGACCTGACCTACTTCCAACCAACAATAGAGGATATTAAGAACGCCCTCTTGACGACCCCCATATCAAAAGATTTGCAGTTTAGTGCCCACATTTTTTCACGCTTATATTCGTGCTCGAACCCAAGATCTGGTGCAAAGAAGCAAGTGGAAAGGTCCATTGAAGATCCAGAAACTTTCATCATCACCTACGAAGGCCTCCACCTCCACTTTGCTTACCCATTCTTTCTAATGGGCCAAACCCAACAGGCCCAATCTTCAACCAAGAAGCCCAAGACGATTGACCCAGAGCCCAAAGCCCAAAGCCCAAAGCCCAAAGAAGCCCAGATTTCCTCACTCCCGAAGCAACTGGCCCACAAGGGTTGCTCGAGGATATGGTCCCATGGA

Protein sequence

VPSISSFSPPTSEDDLVDLTSLLGNDTSSLFRLLSQDTGDDRAINLLVPDLTYFQPTIEDIKNALLTTPISKDLQFSAHIFSRLYSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQSSTKKPKTIDPEPKAQSPKPKEAQISSLPKQLAHKGCSRIWSHG
Homology
[Close]
BLAST of Cp4.1LG19g03510 vs. Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQ---AQSSTKKPKT 144
           Y C+NP   AKKQVERSI++  T+IITYEG H H+ YPFFL  +T+Q    ++   K   
Sbjct: 137 YKCTNPICNAKKQVERSIDESNTYIITYEGFHFHYTYPFFLPDKTRQWPNKKTKIHKHNA 196

Query: 145 IDPEPKAQS-PKPKEAQISSLPKQ 165
            D   K+Q+  + KEAQ+  L  Q
Sbjct: 197 QDMNKKSQTQEESKEAQLGELTNQ 220

[Close]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match: A0A0A0L0Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296160 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQSSTKKPKTIDP 144
           Y CSNPR  AKKQVERSIEDP+ FIITYEGLHLHFAYPFFLMGQ+ QAQS TKKPKTIDP
Sbjct: 148 YRCSNPRCSAKKQVERSIEDPDIFIITYEGLHLHFAYPFFLMGQSPQAQSPTKKPKTIDP 207

Query: 145 EPKAQSPKP 154
           E      KP
Sbjct: 208 EQPEAHEKP 216

[Close]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match: A0A0B2Q1Y8_GLYSO (Putative WRKY transcription factor 49 OS=Glycine soja GN=glysoja_025015 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQS--STKKPKTI 144
           Y C+NPR  AKKQVERS EDP+T IITYEGLHLHFAYP+FLMGQ QQ+ S    KK K I
Sbjct: 143 YRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQLQQSNSHPPIKKSKPI 202

Query: 145 DPEPKAQSPKPKEAQ 158
            P+ +AQ+ +    Q
Sbjct: 203 SPQAQAQAHREDYVQ 217

[Close]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match: K7MT52_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G183100 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQS--STKKPKTI 144
           Y C+NPR  AKKQVERS EDP+T IITYEGLHLHFAYP+FLMGQ QQ+ S    KK K I
Sbjct: 148 YRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQLQQSNSHPPIKKSKPI 207

Query: 145 DPEPKAQSPKPKEAQ 158
            P+ +AQ+ +    Q
Sbjct: 208 SPQAQAQAHREDYVQ 222

[Close]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match: W9RWF0_9ROSA (Putative WRKY transcription factor 49 OS=Morus notabilis GN=L484_009437 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.9e-16
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQSSTKKPKTIDP 144
           Y C+NPR  AKKQVERS +DP+T IITYEGLHLHF YPFF++GQTQ A    KKPK    
Sbjct: 154 YRCTNPRCSAKKQVERSSDDPDTLIITYEGLHLHFTYPFFILGQTQDANLPIKKPKKNIT 213

Query: 145 EPKAQ 150
           E +AQ
Sbjct: 214 ESEAQ 218

[Close]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match: A0A0L9U5C7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g141000 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQS--STKKPKTI 144
           Y C+NPR  AKKQVERSIEDP+T IITYEGLHLHFAYP+FLMGQ  Q+QS    KK K  
Sbjct: 147 YRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPDQSQSHQPIKKSKPT 206

Query: 145 DPEPKAQ 150
             + +AQ
Sbjct: 207 SSQDQAQ 213

[Close]
BLAST of Cp4.1LG19g03510 vs. TAIR10
Match: AT5G43290.1 (AT5G43290.1 WRKY DNA-binding protein 49)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQ---AQSSTKKPKT 144
           Y C+NP   AKKQVERSI++  T+IITYEG H H+ YPFFL  +T+Q    ++   K   
Sbjct: 137 YKCTNPICNAKKQVERSIDESNTYIITYEGFHFHYTYPFFLPDKTRQWPNKKTKIHKHNA 196

Query: 145 IDPEPKAQS-PKPKEAQISSLPKQ 165
            D   K+Q+  + KEAQ+  L  Q
Sbjct: 197 QDMNKKSQTQEESKEAQLGELTNQ 220

[Close]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match: gi|659069085|ref|XP_008448088.1| (PREDICTED: probable WRKY transcription factor 49 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQSSTKKPKTIDP 144
           Y CSNPR  AKKQVERSIEDP+TFIITYEGLHLHFAYPFFLMGQ  Q QS TKKPKTIDP
Sbjct: 150 YRCSNPRCSAKKQVERSIEDPDTFIITYEGLHLHFAYPFFLMGQNPQPQSPTKKPKTIDP 209

Query: 145 EPKAQSPKP 154
           EP+A    P
Sbjct: 210 EPEAHEKPP 218

[Close]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match: gi|449448898|ref|XP_004142202.1| (PREDICTED: probable WRKY transcription factor 49 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-22
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQSSTKKPKTIDP 144
           Y CSNPR  AKKQVERSIEDP+ FIITYEGLHLHFAYPFFLMGQ+ QAQS TKKPKTIDP
Sbjct: 148 YRCSNPRCSAKKQVERSIEDPDIFIITYEGLHLHFAYPFFLMGQSPQAQSPTKKPKTIDP 207

Query: 145 EPKAQSPKP 154
           E      KP
Sbjct: 208 EQPEAHEKP 216

[Close]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match: gi|1009157820|ref|XP_015896959.1| (PREDICTED: probable WRKY transcription factor 49 [Ziziphus jujuba])

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 71/153 (46.41%), Postives = 89/153 (58.17%), Query Frame = 1 

Query: 12  SEDDLVDLTSLLGNDTSSLFRLLSQDT-------GDDRAINLLVPDLTYFQPTIEDIKNA 71
           SE++LV    LL +D S LF L  + T        ++  +N   P + Y  PTI+DI+NA
Sbjct: 12  SEEELV--RELL-DDESPLFVLQEEATEFKNSPPNEEALLNRFNPQV-YSGPTIDDIENA 71

Query: 72  LLTTP--ISKDLQFSAHIFSRLYSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYP 131
           L  T   I  D    A  +   Y C+NPR  AKKQVERS +DPETFIITYEGLHLHFAYP
Sbjct: 72  LSVTTRRIQSDELSPARSY---YRCTNPRCSAKKQVERSSDDPETFIITYEGLHLHFAYP 131

Query: 132 FFLMGQTQQAQSSTKKPKTIDPEPKAQSPKPKE 156
           FF +GQ Q      KK K     P+AQ+ +P +
Sbjct: 132 FFFVGQPQLGNPPIKKTKKNISGPEAQNHEPTQ 157

[Close]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match: gi|951073149|ref|XP_014492047.1| (PREDICTED: probable WRKY transcription factor 49 [Vigna radiata var. radiata])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQS--STKKPKTI 144
           Y C+NPR  AKKQVERSIEDP+T IITYEGLHLHFAYP+FLMGQ+ Q+QS    KK K  
Sbjct: 148 YRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQSNQSQSHQPIKKSKPT 207

Query: 145 DPEPKAQS 151
             + +AQ+
Sbjct: 208 SSQDQAQA 215

[Close]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match: gi|571547050|ref|XP_003551480.2| (PREDICTED: probable WRKY transcription factor 49 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1 

Query: 85  YSCSNPRSGAKKQVERSIEDPETFIITYEGLHLHFAYPFFLMGQTQQAQS--STKKPKTI 144
           Y C+NPR  AKKQVERS EDP+T IITYEGLHLHFAYP+FLMGQ QQ+ S    KK K I
Sbjct: 148 YRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQLQQSNSHPPIKKSKPI 207

Query: 145 DPEPKAQSPKPKEAQ 158
            P+ +AQ+ +    Q
Sbjct: 208 SPQAQAQAHREDYVQ 222

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g03510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WRK49_ARATH1.2e-1146.43Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=... [more]
BLAST of Cp4.1LG19g03510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Y8_CUCSA3.2e-2279.71Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296160 PE=4 SV=1[more]
A0A0B2Q1Y8_GLYSO7.6e-1662.67Putative WRKY transcription factor 49 OS=Glycine soja GN=glysoja_025015 PE=4 SV=... [more]
K7MT52_SOYBN7.6e-1662.67Uncharacterized protein OS=Glycine max GN=GLYMA_18G183100 PE=4 SV=1[more]
W9RWF0_9ROSA9.9e-1666.15Putative WRKY transcription factor 49 OS=Morus notabilis GN=L484_009437 PE=4 SV=... [more]
A0A0L9U5C7_PHAAN1.7e-1567.16Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g141000 PE=4 SV=1[more]
BLAST of Cp4.1LG19g03510 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43290.17.0e-1346.43 WRKY DNA-binding protein 49[more]
BLAST of Cp4.1LG19g03510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069085|ref|XP_008448088.1|2.4e-2381.16PREDICTED: probable WRKY transcription factor 49 [Cucumis melo][more]
gi|449448898|ref|XP_004142202.1|4.6e-2279.71PREDICTED: probable WRKY transcription factor 49 [Cucumis sativus][more]
gi|1009157820|ref|XP_015896959.1|4.7e-1946.41PREDICTED: probable WRKY transcription factor 49 [Ziziphus jujuba][more]
gi|951073149|ref|XP_014492047.1|1.1e-1566.18PREDICTED: probable WRKY transcription factor 49 [Vigna radiata var. radiata][more]
gi|571547050|ref|XP_003551480.2|1.1e-1562.67PREDICTED: probable WRKY transcription factor 49 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003657WRKY_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g03510.1Cp4.1LG19g03510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003657WRKY domainGENE3DG3DSA:2.20.25.80coord: 84..118
score: 1.
IPR003657WRKY domainPFAMPF03106WRKYcoord: 83..118
score: 1.
IPR003657WRKY domainSMARTSM00774WRKY_clscoord: 72..120
score: 0.
IPR003657WRKY domainPROFILEPS50811WRKYcoord: 85..121
score: 10
IPR003657WRKY domainunknownSSF118290WRKY DNA-binding domaincoord: 83..118
score: 1.5
NoneNo IPR availablePANTHERPTHR31221FAMILY NOT NAMEDcoord: 85..164
score: 9.8
NoneNo IPR availablePANTHERPTHR31221:SF42WRKY TRANSCRIPTION FACTOR 49-RELATEDcoord: 85..164
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g03510Cucsa.066300Cucumber (Gy14) v1cgycpeB0099
Cp4.1LG19g03510CmaCh03G004200Cucurbita maxima (Rimu)cmacpeB668
Cp4.1LG19g03510CmoCh03G004310Cucurbita moschata (Rifu)cmocpeB619
Cp4.1LG19g03510Cla018197Watermelon (97103) v1cpewmB485
Cp4.1LG19g03510Csa4G296160Cucumber (Chinese Long) v2cpecuB496
Cp4.1LG19g03510MELO3C003140Melon (DHL92) v3.5.1cpemeB460
Cp4.1LG19g03510ClCG04G008080Watermelon (Charleston Gray)cpewcgB432
Cp4.1LG19g03510CSPI04G14770Wild cucumber (PI 183967)cpecpiB497
Cp4.1LG19g03510Lsi01G014360Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g03510MELO3C003140.2Melon (DHL92) v3.6.1cpemedB541
Cp4.1LG19g03510CsaV3_4G025110Cucumber (Chinese Long) v3cpecucB0611
Cp4.1LG19g03510Bhi03G001568Wax gourdcpewgoB0608
Cp4.1LG19g03510CsGy4G014240Cucumber (Gy14) v2cgybcpeB532
Cp4.1LG19g03510Carg13814Silver-seed gourdcarcpeB1290
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g03510Cp4.1LG10g08390Cucurbita pepo (Zucchini)cpecpeB084
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g03510Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG19g03510Cucurbita pepo (Zucchini)cpecpeB429
Cp4.1LG19g03510Cucumber (Gy14) v1cgycpeB0486
Cp4.1LG19g03510Cucurbita maxima (Rimu)cmacpeB278
Cp4.1LG19g03510Cucurbita maxima (Rimu)cmacpeB829
Cp4.1LG19g03510Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g03510Cucurbita moschata (Rifu)cmocpeB240
Cp4.1LG19g03510Cucurbita moschata (Rifu)cmocpeB782
Cp4.1LG19g03510Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g03510Wild cucumber (PI 183967)cpecpiB481
Cp4.1LG19g03510Cucumber (Chinese Long) v2cpecuB480
Cp4.1LG19g03510Bottle gourd (USVL1VR-Ls)cpelsiB404
Cp4.1LG19g03510Watermelon (Charleston Gray)cpewcgB422
Cp4.1LG19g03510Watermelon (97103) v1cpewmB474
Cp4.1LG19g03510Melon (DHL92) v3.5.1cpemeB442
Cp4.1LG19g03510Cucumber (Gy14) v2cgybcpeB373
Cp4.1LG19g03510Melon (DHL92) v3.6.1cpemedB525
Cp4.1LG19g03510Silver-seed gourdcarcpeB0227
Cp4.1LG19g03510Silver-seed gourdcarcpeB0830
Cp4.1LG19g03510Silver-seed gourdcarcpeB1390
Cp4.1LG19g03510Cucumber (Chinese Long) v3cpecucB0594
Cp4.1LG19g03510Wax gourdcpewgoB0584