Cp4.1LG19g02100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g02100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Membrin, putative
Location	Cp4.1LG19 : 1706641 .. 1708284 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGATCCTTAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCGTTGTTCTGTTTTTCCAATTCGATCTTCAATTTCTCTCTTCTTTGCAATTACGATAATCCATAATCCTCGGTGACTGTGATTCGTTTAATTCTGTATCTTCTTCTTCATTTTGGAATTCAGATTTCACGAAACCGAAATCTCCGTTGCTCTGTGTGCGATTCCGATGTCGGCCATGGAAGGAGGAGGAGGAGGAACGCTTTCTGAGATATACCATAGTGCGAAGAGGCTTCTATTGAGGACCAGGGATGAGCTTGAGAAGCTGGAGCGTCTTGAGTACACGGCGGCCAGCGGTATGGACTCCCCCGACCTTTCCTCCTCGATCAAGAGGGACATTACTCAGATCCAGTCGCTCTGTGTTGAGATGGATAGACTCTGGCGGTCCGTGGCGGCGAAGTCTCAACGTGATTTGTGGAAAAGGTTCTTGTTCCATTCCCATTCCCACCTTCGTGTTTTTCTGATTGAATATTTAATTGTGCGGTTTCGTTCATTTCATGTAACTCTTTTGGATTGAATTTAAAATTAGTTTGCATTTACCTGTTTTTCTTCTCCAATTTTATTGAAATTTGGTTGTTCTTTCTGAATTTCTTGATTTGTTGATGTATTCGAATGTGATGTTTGTTATGGTCCTCTTCTTTGTCTGATGGAACTTACGGTTTCCTTGGAGTTATACTATTGTTCTTCTACACCAGGGAAAAAAAAAAAAGGGAAAACCAAGGAAAAACGAAATGAGGGTGGTGTCTTAGATCCTGGATTGAATTTGGTCCGGGAGTGCTGCGTTTATTTTGTAATTTACTAACGTGTTGCAATATGGGATTGTGATTTTTTCTTTATGGTGGTAATTTTGGATGGCCTTACGACTGATTTCGAACTTGATAGCGTGTAAACTTGATGTGGTTCAATGTGGAATTGTCCTGCAGAAAGGTGGAACAGATTGCCGAGGAGGCTGACTCTATGAAACAGAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGATGGAAGCAAAAGAGAGGGCAGACTTGGTTGGAAGAGCTGTATGTACTTACTGTTAGCTGCTTGTGTCTTTTGGTGGCTAATCTTTCGTTTTAACCTTTCATTTGAAGTGATATTTGGTTATGCTGCTTTTGTAGAATGGAGACTCTGCTCACATTTTGAGAATTTTTGACGATGAGGCACAAGCTATGAGTTCAGTTCGAAATTCGTCGCGGATGTTAGAGGAAGCTAGTGCGACGGGAGAAGCGATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGGTATGTGCATGACTGAGACCATGTAGACATATTTGTTTTTCTTTACTGGGGCTAGCGTTAATTGTTAAAGCTATCTGTGAAAGACTATTGGTGTATTCACTCTATAAATGTGAATATGTTAAGCATTCTATTATATATACACAGTCCTTTGTTGCTTTAGGTTAGCTGCATGTACGGTGTCTTTGAGTTATGATCATATTTGAAGCATTAATTCAGTGTTTGGAAGTTGGTGCTCTAAGTATGAATTTTTACCACTCGAGTCTCGGTCTATATTTTGGCCGTTATAGTTTCTCTTGGAGTAAAAAGCAC

mRNA sequence

TGAGATCCTTAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCGTTGTTCTGTTTTTCCAATTCGATCTTCAATTTCTCTCTTCTTTGCAATTACGATAATCCATAATCCTCGGTGACTGTGATTCGTTTAATTCTGTATCTTCTTCTTCATTTTGGAATTCAGATTTCACGAAACCGAAATCTCCGTTGCTCTGTGTGCGATTCCGATGTCGGCCATGGAAGGAGGAGGAGGAGGAACGCTTTCTGAGATATACCATAGTGCGAAGAGGCTTCTATTGAGGACCAGGGATGAGCTTGAGAAGCTGGAGCGTCTTGAGTACACGGCGGCCAGCGGTATGGACTCCCCCGACCTTTCCTCCTCGATCAAGAGGGACATTACTCAGATCCAGTCGCTCTGTGTTGAGATGGATAGACTCTGGCGGTCCGTGGCGGCGAAGTCTCAACGTGATTTGTGGAAAAGAAAGGTGGAACAGATTGCCGAGGAGGCTGACTCTATGAAACAGAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGATGGAAGCAAAAGAGAGGGCAGACTTGGTTGGAAGAGCTAATGGAGACTCTGCTCACATTTTGAGAATTTTTGACGATGAGGCACAAGCTATGAGTTCAGTTCGAAATTCGTCGCGGATGTTAGAGGAAGCTAGTGCGACGGGAGAAGCGATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGGTATGTGCATGACTGAGACCATGTAGACATATTTGTTTTTCTTTACTGGGGCTAGCGTTAATTGTTAAAGCTATCTGTGAAAGACTATTGGTGTATTCACTCTATAAATGTGAATATGTTAAGCATTCTATTATATATACACAGTCCTTTGTTGCTTTAGGTTAGCTGCATGTACGGTGTCTTTGAGTTATGATCATATTTGAAGCATTAATTCAGTGTTTGGAAGTTGGTGCTCTAAGTATGAATTTTTACCACTCGAGTCTCGGTCTATATTTTGGCCGTTATAGTTTCTCTTGGAGTAAAAAGCAC

Coding sequence (CDS)

ATGTCGGCCATGGAAGGAGGAGGAGGAGGAACGCTTTCTGAGATATACCATAGTGCGAAGAGGCTTCTATTGAGGACCAGGGATGAGCTTGAGAAGCTGGAGCGTCTTGAGTACACGGCGGCCAGCGGTATGGACTCCCCCGACCTTTCCTCCTCGATCAAGAGGGACATTACTCAGATCCAGTCGCTCTGTGTTGAGATGGATAGACTCTGGCGGTCCGTGGCGGCGAAGTCTCAACGTGATTTGTGGAAAAGAAAGGTGGAACAGATTGCCGAGGAGGCTGACTCTATGAAACAGAGTTTGGACAAGTATTTTCTTAGAAACCAGAAGCGGATGATGGAAGCAAAAGAGAGGGCAGACTTGGTTGGAAGAGCTAATGGAGACTCTGCTCACATTTTGAGAATTTTTGACGATGAGGCACAAGCTATGAGTTCAGTTCGAAATTCGTCGCGGATGTTAGAGGAAGCTAGTGCGACGGGAGAAGCGATCCTTTTCAAATACTCTGAGCAGAGGGATCGCCTGAAGGTATGTGCATGA

Protein sequence

MSAMEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLKVCA

Homology

[Close]

BLAST of Cp4.1LG19g02100 vs. Swiss-Prot
Match: MEM11_ARATH (Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-57
Identity = 111/168 (66.07%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 8   GGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEM 67
           GGG+LS++Y SAKR+LL+ RD +E+LER E   +S MDSPDL+SS+KRDIT+++SLC  M
Sbjct: 8   GGGSLSDVYSSAKRILLKARDGIERLERFE---SSSMDSPDLASSVKRDITEVRSLCSNM 67

Query: 68  DRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANG 127
           D LWRS+  KSQRDLW+RK EQ+ EEA+ +  SL+KY  RNQ++M+EAKERADL+GRA+G
Sbjct: 68  DTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGRASG 127

Query: 128 DSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           + AHIL+IFD+EAQAMSSV+NS RMLEE+ ++G AIL KY+EQRDRLK
Sbjct: 128 EGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLK 172

[Close]

BLAST of Cp4.1LG19g02100 vs. Swiss-Prot
Match: MEM12_ARATH (Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.6e-52
Identity = 106/172 (61.63%), Postives = 135/172 (78.49%), Query Frame = 1


Query: 4   MEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSL 63
           M  G  G LSE+Y SAKR+LLR R+ +EKLER +       D  DL+SS+KRDIT++QSL
Sbjct: 1   MASGTVGGLSEVYSSAKRILLRARNGIEKLERFD------SDPTDLASSVKRDITEVQSL 60

Query: 64  CVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVG 123
           C  MD LWRS+  KSQRDLW+RK EQ+ EEA+ + QSL+KY  RNQ++M+EAKERADL+G
Sbjct: 61  CSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLLG 120

Query: 124 RANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           R +G+ AHIL+IFD+EAQ M+SV+NS RMLE++  +G AIL KY+EQRDRLK
Sbjct: 121 RGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLK 166

[Close]

BLAST of Cp4.1LG19g02100 vs. TrEMBL
Match: A0A0A0KWL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188920 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.0e-81
Identity = 161/175 (92.00%), Postives = 171/175 (97.71%), Query Frame = 1


Query: 1   MSAMEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQI 60
           MSA+EGGGGGTLSEIY SAKRLLLRTRD LEKLERLEY+AASGMDSP+LS SIK+DITQI
Sbjct: 1   MSALEGGGGGTLSEIYQSAKRLLLRTRDGLEKLERLEYSAASGMDSPELSFSIKKDITQI 60

Query: 61  QSLCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERAD 120
           QSLCVEMDRLWRS+AAKSQRDLWKRKVEQ+AEEADSMKQSLDKYFLRNQKRM EAKERA+
Sbjct: 61  QSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEADSMKQSLDKYFLRNQKRMTEAKERAE 120

Query: 121 LVGRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           L+GRA+GDSAHILRIFDDEAQAM+SVRNSSRMLEEASATGEAILFKYSEQRDRLK
Sbjct: 121 LLGRASGDSAHILRIFDDEAQAMNSVRNSSRMLEEASATGEAILFKYSEQRDRLK 175

[Close]

BLAST of Cp4.1LG19g02100 vs. TrEMBL
Match: W9S8Z0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008795 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.6e-69
Identity = 137/173 (79.19%), Postives = 161/173 (93.06%), Query Frame = 1


Query: 4   MEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASG-MDSPDLSSSIKRDITQIQS 63
           M GGGGGTLSE Y S+K+LLLR+RD LE+LERLEY++ S  +DSPDLS S+K+DI+QI S
Sbjct: 5   MGGGGGGTLSEKYQSSKKLLLRSRDGLERLERLEYSSTSASIDSPDLSFSVKKDISQIHS 64

Query: 64  LCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLV 123
           +C EM+RLWRSV AKSQRDLWKRKVEQ+AEEA+S+KQSLDKYFLRNQ+RMMEAKE+A+L+
Sbjct: 65  ICAEMERLWRSVPAKSQRDLWKRKVEQVAEEAESLKQSLDKYFLRNQRRMMEAKEKAELL 124

Query: 124 GRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           GRANG+SAH+LRIFD+EAQAM SVRNSSR+LEEASATGEAILFKYSEQR+RLK
Sbjct: 125 GRANGESAHVLRIFDEEAQAMQSVRNSSRLLEEASATGEAILFKYSEQRERLK 177

[Close]

BLAST of Cp4.1LG19g02100 vs. TrEMBL
Match: M5X0F1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011033mg PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.2e-65
Identity = 135/168 (80.36%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 8   GGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEM 67
           GGGTLSEIY SAK+LLLRTRD LEKLERLE   A G+DSPDLS+S+KRDI+QIQS C EM
Sbjct: 8   GGGTLSEIYQSAKKLLLRTRDALEKLERLEN--AGGIDSPDLSTSVKRDISQIQSFCAEM 67

Query: 68  DRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANG 127
           DRLWRSV AKSQRDLWKRKVEQIAEEA S+K+SLDKY LRNQKR  EA+ERA+L+GRANG
Sbjct: 68  DRLWRSVGAKSQRDLWKRKVEQIAEEAQSLKESLDKYNLRNQKRAQEARERAELLGRANG 127

Query: 128 DSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           + AH+LRIFDDEAQA +SVR+SSRMLEEASATGE+IL KY+EQRD LK
Sbjct: 128 EGAHVLRIFDDEAQARASVRSSSRMLEEASATGESILRKYAEQRDWLK 173

[Close]

BLAST of Cp4.1LG19g02100 vs. TrEMBL
Match: M5VR17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011046mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-64
Identity = 134/168 (79.76%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 8   GGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEM 67
           GGGTLSEIY SAK+LLLRTRD LEKLERLE   A G+DSPDLS+S+KRDI+QIQSLC EM
Sbjct: 8   GGGTLSEIYQSAKKLLLRTRDGLEKLERLEN--AGGIDSPDLSTSVKRDISQIQSLCSEM 67

Query: 68  DRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANG 127
           DRLWRSV AKSQRDLWKRKVEQIAEEA S+K+SLDKY LRNQKR  EA+ER++L+GRANG
Sbjct: 68  DRLWRSVGAKSQRDLWKRKVEQIAEEAQSLKESLDKYNLRNQKRAQEARERSELLGRANG 127

Query: 128 DSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           + AH+LRIFDDEAQA +SV +SSRMLEEASATGE+IL KY+EQRD LK
Sbjct: 128 EGAHVLRIFDDEAQARASVHSSSRMLEEASATGESILRKYAEQRDWLK 173

[Close]

BLAST of Cp4.1LG19g02100 vs. TrEMBL
Match: D7TL48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01310 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.4e-64
Identity = 125/169 (73.96%), Postives = 156/169 (92.31%), Query Frame = 1


Query: 7   GGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVE 66
           GGG T SEIY ++K+LLLRTRD LE+LERLE+++++ +DSP+L+ ++K+DI+QIQSLCVE
Sbjct: 3   GGGTTFSEIYQNSKKLLLRTRDGLERLERLEFSSSNPVDSPELAFAVKKDISQIQSLCVE 62

Query: 67  MDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRAN 126
           MDRLWRS++AKSQRDLWKRKVEQ+AEE++S+K+SLDKYFLR+QKRMMEAKERA+L+GRAN
Sbjct: 63  MDRLWRSISAKSQRDLWKRKVEQVAEESESLKESLDKYFLRHQKRMMEAKERAELLGRAN 122

Query: 127 GDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           GDSAH+LRIFD+EAQAM S RNSS MLEEA + G AIL KY++QRDRLK
Sbjct: 123 GDSAHVLRIFDEEAQAMQSARNSSMMLEEAYSKGVAILTKYADQRDRLK 171

[Close]

BLAST of Cp4.1LG19g02100 vs. TAIR10
Match: AT2G36900.1 (AT2G36900.1 membrin 11)

HSP 1 Score: 222.6 bits (566), Expect = 1.9e-58
Identity = 111/168 (66.07%), Postives = 143/168 (85.12%), Query Frame = 1


Query: 8   GGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEM 67
           GGG+LS++Y SAKR+LL+ RD +E+LER E   +S MDSPDL+SS+KRDIT+++SLC  M
Sbjct: 8   GGGSLSDVYSSAKRILLKARDGIERLERFE---SSSMDSPDLASSVKRDITEVRSLCSNM 67

Query: 68  DRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANG 127
           D LWRS+  KSQRDLW+RK EQ+ EEA+ +  SL+KY  RNQ++M+EAKERADL+GRA+G
Sbjct: 68  DTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGRASG 127

Query: 128 DSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           + AHIL+IFD+EAQAMSSV+NS RMLEE+ ++G AIL KY+EQRDRLK
Sbjct: 128 EGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLK 172

[Close]

BLAST of Cp4.1LG19g02100 vs. TAIR10
Match: AT5G50440.1 (AT5G50440.1 membrin 12)

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-53
Identity = 106/172 (61.63%), Postives = 135/172 (78.49%), Query Frame = 1


Query: 4   MEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSL 63
           M  G  G LSE+Y SAKR+LLR R+ +EKLER +       D  DL+SS+KRDIT++QSL
Sbjct: 1   MASGTVGGLSEVYSSAKRILLRARNGIEKLERFD------SDPTDLASSVKRDITEVQSL 60

Query: 64  CVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVG 123
           C  MD LWRS+  KSQRDLW+RK EQ+ EEA+ + QSL+KY  RNQ++M+EAKERADL+G
Sbjct: 61  CSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLLG 120

Query: 124 RANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           R +G+ AHIL+IFD+EAQ M+SV+NS RMLE++  +G AIL KY+EQRDRLK
Sbjct: 121 RGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLK 166

[Close]

BLAST of Cp4.1LG19g02100 vs. NCBI nr
Match: gi|659082731|ref|XP_008442003.1| (PREDICTED: membrin-11 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.3e-81
Identity = 161/175 (92.00%), Postives = 171/175 (97.71%), Query Frame = 1


Query: 1   MSAMEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQI 60
           MSA+EGGGGGTLSEIY SA+R LLRTRD LEKLERLEYTAASGMDSP+LS SIK+DITQI
Sbjct: 1   MSALEGGGGGTLSEIYQSARRQLLRTRDGLEKLERLEYTAASGMDSPELSFSIKKDITQI 60

Query: 61  QSLCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERAD 120
           QSLCVEMDRLWRS+AAKSQRDLWKRKVEQ+AEEADSMKQSLDKYFLRNQKRMMEAKERA+
Sbjct: 61  QSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEADSMKQSLDKYFLRNQKRMMEAKERAE 120

Query: 121 LVGRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           L+GRA+GDSAHILRIFDDEAQAM+SVRNSSRMLEEASATGEAILFKYSEQRDRLK
Sbjct: 121 LLGRASGDSAHILRIFDDEAQAMNSVRNSSRMLEEASATGEAILFKYSEQRDRLK 175

[Close]

BLAST of Cp4.1LG19g02100 vs. NCBI nr
Match: gi|449462766|ref|XP_004149111.1| (PREDICTED: membrin-11 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 4.4e-81
Identity = 161/175 (92.00%), Postives = 171/175 (97.71%), Query Frame = 1


Query: 1   MSAMEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQI 60
           MSA+EGGGGGTLSEIY SAKRLLLRTRD LEKLERLEY+AASGMDSP+LS SIK+DITQI
Sbjct: 1   MSALEGGGGGTLSEIYQSAKRLLLRTRDGLEKLERLEYSAASGMDSPELSFSIKKDITQI 60

Query: 61  QSLCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERAD 120
           QSLCVEMDRLWRS+AAKSQRDLWKRKVEQ+AEEADSMKQSLDKYFLRNQKRM EAKERA+
Sbjct: 61  QSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEADSMKQSLDKYFLRNQKRMTEAKERAE 120

Query: 121 LVGRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           L+GRA+GDSAHILRIFDDEAQAM+SVRNSSRMLEEASATGEAILFKYSEQRDRLK
Sbjct: 121 LLGRASGDSAHILRIFDDEAQAMNSVRNSSRMLEEASATGEAILFKYSEQRDRLK 175

[Close]

BLAST of Cp4.1LG19g02100 vs. NCBI nr
Match: gi|703157686|ref|XP_010111791.1| (hypothetical protein L484_008795 [Morus notabilis])

HSP 1 Score: 268.9 bits (686), Expect = 6.5e-69
Identity = 137/173 (79.19%), Postives = 161/173 (93.06%), Query Frame = 1


Query: 4   MEGGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASG-MDSPDLSSSIKRDITQIQS 63
           M GGGGGTLSE Y S+K+LLLR+RD LE+LERLEY++ S  +DSPDLS S+K+DI+QI S
Sbjct: 5   MGGGGGGTLSEKYQSSKKLLLRSRDGLERLERLEYSSTSASIDSPDLSFSVKKDISQIHS 64

Query: 64  LCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLV 123
           +C EM+RLWRSV AKSQRDLWKRKVEQ+AEEA+S+KQSLDKYFLRNQ+RMMEAKE+A+L+
Sbjct: 65  ICAEMERLWRSVPAKSQRDLWKRKVEQVAEEAESLKQSLDKYFLRNQRRMMEAKEKAELL 124

Query: 124 GRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           GRANG+SAH+LRIFD+EAQAM SVRNSSR+LEEASATGEAILFKYSEQR+RLK
Sbjct: 125 GRANGESAHVLRIFDEEAQAMQSVRNSSRLLEEASATGEAILFKYSEQRERLK 177

[Close]

BLAST of Cp4.1LG19g02100 vs. NCBI nr
Match: gi|1009114041|ref|XP_015873470.1| (PREDICTED: membrin-11-like [Ziziphus jujuba])

HSP 1 Score: 260.8 bits (665), Expect = 1.8e-66
Identity = 132/168 (78.57%), Postives = 155/168 (92.26%), Query Frame = 1


Query: 8   GGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAASGMDSPDLSSSIKRDITQIQSLCVEM 67
           GGGTLSEI+ SAK+LL+R+R  LE+LE LEY  ++ +DSP+LS S+KRDI QIQSLCVEM
Sbjct: 6   GGGTLSEIHQSAKKLLMRSRGGLERLESLEYMTSTAVDSPELSYSVKRDIAQIQSLCVEM 65

Query: 68  DRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMMEAKERADLVGRANG 127
           DRLWRSVA KS+RDLWKRKVEQI EEA+S+KQSLDKYF+RNQ+R+ EAKERA+L+GRANG
Sbjct: 66  DRLWRSVANKSERDLWKRKVEQIVEEAESLKQSLDKYFVRNQRRVTEAKERAELLGRANG 125

Query: 128 DSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDRLK 176
           +SAH+LRIFD+EAQAM SVRNSSR+LEEASATGEAILFKYSEQR+RLK
Sbjct: 126 ESAHVLRIFDEEAQAMQSVRNSSRLLEEASATGEAILFKYSEQRERLK 173

[Close]

BLAST of Cp4.1LG19g02100 vs. NCBI nr
Match: gi|702246417|ref|XP_010054848.1| (PREDICTED: membrin-11-like [Eucalyptus grandis])

HSP 1 Score: 258.8 bits (660), Expect = 6.8e-66
Identity = 135/182 (74.18%), Postives = 158/182 (86.81%), Query Frame = 1


Query: 6   GGGGGTLSEIYHSAKRLLLRTRDELEKLERLEYTAAS------------GMDSPDLSSSI 65
           GGGGGTLS++Y SAKR LLRTRD +E+LERLE +++S            G++S +LSSSI
Sbjct: 11  GGGGGTLSDLYQSAKRALLRTRDGMERLERLECSSSSSSSGGGGGGGGGGLESQELSSSI 70

Query: 66  KRDITQIQSLCVEMDRLWRSVAAKSQRDLWKRKVEQIAEEADSMKQSLDKYFLRNQKRMM 125
           KRDI QIQSLCVEMDRLWRS+AAKSQRDLWKRKVEQ+AEE +S+K+SLDK+FL+NQKRMM
Sbjct: 71  KRDIAQIQSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEETESLKESLDKHFLKNQKRMM 130

Query: 126 EAKERADLVGRANGDSAHILRIFDDEAQAMSSVRNSSRMLEEASATGEAILFKYSEQRDR 176
           EAKERA+L+GRANGDSAH+LRIFDDEAQAM S RNS+RMLEE+ ATG AIL KYS+QRDR
Sbjct: 131 EAKERAELLGRANGDSAHVLRIFDDEAQAMQSARNSARMLEESYATGVAILSKYSDQRDR 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g02100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MEM11_ARATH	3.4e-57	66.07	Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1	[more]
MEM12_ARATH	5.6e-52	61.63	Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1	[more]

BLAST of Cp4.1LG19g02100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWL2_CUCSA	3.0e-81	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188920 PE=4 SV=1	[more]
W9S8Z0_9ROSA	4.6e-69	79.19	Uncharacterized protein OS=Morus notabilis GN=L484_008795 PE=4 SV=1	[more]
M5X0F1_PRUPE	5.2e-65	80.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011033mg PE=4 SV=1	[more]
M5VR17_PRUPE	3.4e-64	79.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011046mg PE=4 SV=1	[more]
D7TL48_VITVI	4.4e-64	73.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g01310 PE=4 SV=...	[more]

BLAST of Cp4.1LG19g02100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36900.1	1.9e-58	66.07	membrin 11	[more]
AT5G50440.1	3.1e-53	61.63	membrin 12	[more]

BLAST of Cp4.1LG19g02100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082731\|ref\|XP_008442003.1\|	3.3e-81	92.00	PREDICTED: membrin-11 [Cucumis melo]	[more]
gi\|449462766\|ref\|XP_004149111.1\|	4.4e-81	92.00	PREDICTED: membrin-11 [Cucumis sativus]	[more]
gi\|703157686\|ref\|XP_010111791.1\|	6.5e-69	79.19	hypothetical protein L484_008795 [Morus notabilis]	[more]
gi\|1009114041\|ref\|XP_015873470.1\|	1.8e-66	78.57	PREDICTED: membrin-11-like [Ziziphus jujuba]	[more]
gi\|702246417\|ref\|XP_010054848.1\|	6.8e-66	74.18	PREDICTED: membrin-11-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005794	Golgi apparatus

Vocabulary: **Molecular Function**
Term	Definition
GO:0005484	SNAP receptor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR027027	GOSR2/Membrin/Bos1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061025	membrane fusion
biological_process	GO:0006810	transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005484	SNAP receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g02100.1	Cp4.1LG19g02100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027027	GOSR2/Membrin/Bos1	PIR	PIRSF028865	Membrin-2	coord: 12..178 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 16..36 scor
None	No IPR available	PANTHER	PTHR21230	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	coord: 7..175 score: 1.3
None	No IPR available	PANTHER	PTHR21230:SF1	GOLGI SNAP RECEPTOR COMPLEX MEMBER 2	coord: 7..175 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG19g02100	Cucsa.334760	Cucumber (Gy14) v1	cgycpeB0875
Cp4.1LG19g02100	CmaCh03G002250	Cucurbita maxima (Rimu)	cmacpeB672
Cp4.1LG19g02100	CmaCh07G011480	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g02100	CmoCh07G011960	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g02100	CmoCh03G002390	Cucurbita moschata (Rifu)	cmocpeB625
Cp4.1LG19g02100	Cla012114	Watermelon (97103) v1	cpewmB486
Cp4.1LG19g02100	Csa4G188920	Cucumber (Chinese Long) v2	cpecuB497
Cp4.1LG19g02100	MELO3C008823	Melon (DHL92) v3.5.1	cpemeB459
Cp4.1LG19g02100	ClCG04G005470	Watermelon (Charleston Gray)	cpewcgB433
Cp4.1LG19g02100	CSPI04G11080	Wild cucumber (PI 183967)	cpecpiB498
Cp4.1LG19g02100	Lsi01G016820	Bottle gourd (USVL1VR-Ls)	cpelsiB391
Cp4.1LG19g02100	MELO3C008823.2	Melon (DHL92) v3.6.1	cpemedB542
Cp4.1LG19g02100	CsaV3_4G012110	Cucumber (Chinese Long) v3	cpecucB0612
Cp4.1LG19g02100	Bhi03G001855	Wax gourd	cpewgoB0598
Cp4.1LG19g02100	CsGy4G010600	Cucumber (Gy14) v2	cgybcpeB533
Cp4.1LG19g02100	Carg19579	Silver-seed gourd	carcpeB0893
Cp4.1LG19g02100	Carg13359	Silver-seed gourd	carcpeB0830

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG19g02100	Cp4.1LG10g06970	Cucurbita pepo (Zucchini)	cpecpeB077

The following block(s) are covering this gene:

None