Cp4.1LG19g01730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g01730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	KH domain-containing family protein
Location	Cp4.1LG19 : 1359848 .. 1366278 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCATTAACAATCATAGATTTTCCACATTTCAGCCTCCATATTTACAGGCATCCACCCTTGTACTCCTTAGCTCCGCCTCCGCCTCCCTCGTCGGAGCTCTCCTCATCCACCGTCTTCTCCGGCGTCATCGCCGCCTCAATCTTCCAAAGGCCCTTCTTCTACTTTCCAATCCCCAATTCTCTGTATCCGTCTCTGCTCAGAGCAATAAACACAAAGCGCTATGTCAGGTATGTACAGTACCAATTTCTCCCCGGCAAGAACTGCTTCGCCTCACATCAGAACCACTCCTGATGTCGAAAGGTACCTCCTCTGATAACCCACTTTCGAGAATTTCCCTTTCTTCTTATTTTTGTTTCATTTAGATTTTTGAGTTTGCTCAGCTTGATTGAGTTGATTACTCGCTGATTAATTGTTGAATAATTAATTCTCCTTTCATTCTTTGTTCTTTAATCTCTAGTCAGTACTTGTCGGAGCTTCTGGCAGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGGTACTGTTCTTCTCTGAATTTTCGGTGTTCTGAATATCCTTTTAGTGTTTTTGAGCTGCTTAGTTGTTGTGGAGATGTGTATTTGTATGTTTAGATCGGAACAGCTGGTGGGTTTTGAGCTGCGTAACAGTGATTGCTCTCTTTGTTCTTGAGTTTGGCTGTTGAATTGTGGATATGTTAGTGATGGATCATTTATTTCACATTCTACACTCGGGTTTTAATGATTAATCATCCTTTTTAAGTTTGTTTTTTTCTTGTTTTCCTTGTTTTCCTTGTTTTCCTTGTGTGCCGAAGGAAGAAAAATGTGTGTTGATAGTAATTTCATCTTATCTTTGATCATTTGTCATTTATTGTTTTTTCTCCCTTCATTACTTGAAAAGTAGAAATGGGTTGTTTTTTGTTTCTTATTCTGTGTTAGCCTATAATAAAAAAAAAAGATAAGTTAGAAATGTTTCTAAATAAATAAGAATGAGAGTTCAAAAATATTATGCAATGCATATCCATTTCAAAACAAAGAGCAAGCAAGACAAATCAGTGCGTGAAAACACAATCGAACGAGCTCTTTTGTATTTGATTCAATTGATTCAAGCTGAGGGCTCGTGGCACTAGGCGTGACTGTGTGTTCGTATTTGTTGGGAAATGTCAAGTTAATCTTGTTGACTTTCATTTTTTTTAGAACTAAGCAGACGCTTGCGTATTGGTAGCTTTGGTTTTGACTTGTGGTTTCTTGCCTTAGCTAACTTAATTCTTCTAAGAAATGAGGTCCAAAGCTTTATACATACCCATTCTGGTGGATTTTTCTTCTTAAATTTTTTAGAGATATATCTTGTTTACACTGATTTATTTTACAAAAAAATCTCTTCTGGTGTATCACGCTCATTAACAAATATACCATTAATAGACCAACATTGTCATGGCTAAGCATTTTCGAGTTTTTCTGTTATTCCAGTTTGAGACTAGAAGAAATGAAAGTTAAGCCATTAAGTTTGGTTTAGAATGTTGTAACAGTCAATATTTGACCTACTCATCAGTGGTGGAGGCTCAAATTCATGTAGACAATCTGCCCTTTGTTATATATATATATATATATATATATATATATGCACTGGATCCATCCGGCCCGGAATCCAATGAACCGATGGTTAACCCTCTTTTTTTAGTGATTGCCATAAAGAGAGAAGTTTGCGCTTTTTCCTTAGAAGAAAGGTCCTCAAAGCCTCTTCATTCCAATGAGAATGATGAAGAATCCAATAGCTCCTCTTAGGACCCACAATCATCGAGATTTGAGAAAGATTTGAAATCGGTGAGTGTTTGGGTCAGGTTGTGCGCACCTTGACTAAACTCACTGGACAACCGCTTGACTCTATTACGTTTAGTTGACATGAAAACTTGTAGGATATTTAATATTAAGAAGGTGGCCACTATGGATTGAGTCCATGGAGGTCAACCATGATGGTTTTTTGTTAGTCACTTATAAGTTAATAAGATCTTAATCTTTGACAAGAGAATTGAAGGATGTGTGTTGAATTTGGAAAATCTTTGCAACTGAAGGTTAGCCACTTAAGGTCATGAAGATCTGCAGTAGCTTAAGAAATCAATGCGTCGGAAATATGGTGCTGTTAATAGTTTTATATGCCTTTACTGGGACAAGATCTATTCTTTAGGTTGTCTTTGAGTTCTTAGGTTAAAAGTCGGTGCGACTTGAACTTCTGGAGACCTTCTTGGATTATTTTGCAAGTAATAATCACGCAATGTTCTAGGGGTCGAGCTTCAACCTCTATTTAAATTGCCAAATAGCGTATTAATGAACGTCATCTCGCTCTTAGTCCCTTCCAAATTGATCTTATTACAAATTACAGTTTTTCCTACTTATTCTTGTTCTCTGTAGTTAATGCACAAACAGATTTCTATATATTTCTGCTTTTCAATTCCGTCCGTAACTTCTCACTGCAAGCACTTTCAATGCAGAGATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGCAGTGCAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGGTAACTACTGTTGCAAAATCGAAACTTATTTGTAACTGGCTCCTGATACTTGTTGATCTCATCATTTTGAGTCCAATTTTACTATCTTTTGATATAGAGCAAACATATGCCATAGTTATTACTTGATAGATTAAAGGTAACAGTGAAATACCCCCTCTGGATTAAGCTTGTAGCTTTAGGGAAATCATTCTATTTTGTTGGTTCTCAATAAGGCAGTTTCATGTTTCTCAATTTGACTGTGTAGTAATACTATTTCATATACTTATTGAGATTTTGTATTCTTTCATTTCGTCTCAATGAAAGTTCGGTTTTCAAGTAAATGCACGTTATTTTACATAAAAACAAATATGTTTCCACAATCTGTTTTTTCTCGACGGCTGTTGACCTGAAAGATCTTGAGACTTTCTGGAGTCAAAAACATGCGGCAGTGTTTTTGATTATGAAAAGGGTGAAACTTGCCTATGTTAAGATCTTATCGTCTTGAGCCCTTCACTAGCATTGAACATCCAATCTGGAAAATAATATCCCAATGTCTTCCTTCAAAAATAAAAGAAGTGAGAGAGAATTTCTTTGTGAGATCGTTGGAGAGGGGAACGAAGCATTCCGTATAAGGGTGTGAAAACCTCTCCCTAATAGACGCGTTTTAAAACCGTGAGACTGACGGCATACGTAACGAGCCAAAGCAAACAGTATCTACTAGCGGTGGGCTTGAGCTATTACAAATAGTATTAGAGCTAGACACTGGGAAGTGTGTCAGCATGGATGTTGGGTCCCTAAGGGGGGTGGATTGTGAGATCCCACAACGGTTGGAGAGGAGAACGAAACATTCATTATAAGAGTGTAGAAGTCTCTCCTTAGTAGATGTGTTTTAAAATTGGGAGGTTGACAACGATACATAACGGGCCAAAGCATATAATATCTGCTAACGGTGGACTTGGGCTGTTACATCCTTTGACTTATCCAAGTCCGATTGTGATAGTACATACATTTTATTACTTTTCACTTGTGTGAGTTGGTCAAAAACTTCTTTCACCATTCTTGAGGATGATGTCTCACACTGGTTGCCCTAGTAGGTTCTCAACTTTAAAAATCAACTGAAAGCATCATCTATAAGACTGAAGAGCAGCCGTTTAGATGAATGCAAAGAGTAAAGATATAATTTATCATGCATTTATCCGTTCAAGTATGTGTAACGAATCTAGATAAACCGAACGTTTCTTGCAAAAATTGGCCTCTTACTGCATCGTTATTCAAGATAATTACAAGAACACTTGAAGAATGTTTCAACTACATACAGATTACATTATGAAAATGTTTTTCCAGGTTATTTCTCTCATTTTCAATTATTTCCTCTTCGTTTGTAATCCCCCGATCGTTTCCCAGTCCTTATATATGCTCATATAGAGAATTCTATTATGTTAATTTGTGCTCTGAACTGTTATTCTTAGTTTGTTTTTAAATCGTCTTAAGATGCTAGAACCTTTTGAAATATACAGCAGAGGTTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCGAGCTCGCTCACAGTAAAGAGGATTCTACGTCTGGAAATACCCGTGGATACTTACCCCAATGTAAGTTCTGTCAAGTATGAATGGCGTTCTGTTTGCTGCGCGAACACATAAAAGGATGGACATATTAATACGTGAAGTTTCTGTTTTTTGTGGACGTCAGTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGTATTATAACGATATTGCAATTTTGGTTTCATTGTATGTTATCGATATTGATTCACATGATGGGTCTATCACGAGTCGAAACTATTGAATACATATTTTTTCTTCTCTCATTGGATTGTTGTTGTTCAACTTTTACATTGTAAAGGAAGAGAAATTAAGGGGACGACCTGGCTATGAGCACTTGAACGAACCGTTGCACATCTTGATTGAGGGGGATTTACCAGTCAATATTGTTGATATAAGGCTCAGACAAGCACAGGAAATTATTGAAGAACTGCTCAAACCTGTGGTACGTTTTCAACGTTGGATTCTTTCTCGAGTGCTTTTATCACGTTTTTTGTTCTCAAAAGTATCATGTTTAGATAAGTGTTTTTTTGTTACCTAAGTAACTATCACGGATGTTGAGGATTGTTGGGGGAGGAGTCCCACATCGACTAATTAAAGGGTTGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGGAAACCAAAAGCAAAGCTAGAGAGCTTATGCTGAAAGTGGACAATATCGTACCATTGTGGAGGGTTGTGATTTAGTCATGCCCTTAACTTAGTCATGTCAATAAAATTCTCAAATGTCGAACAATGAAGTTGTGAGCCTCAAAGGTGAAGTCAAAAGTGACTAAAGTGTTGAACAAAGGGTGTGCTTTGTTCGAGGGCTCCATAGGCCTTAGGAGAGGCTCTATTGTGTACTTTGTTCGAGTGGAAGATTGTTGGGAGAGGAGTCCCACATCGATTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTACGAGACATTTTGGGGAAACCAAAAGCGAAGTCATGAGAGCTTATGCTCAAAGTGGACAACCTTATACTATTGTGGAGGGTCGTGATTTTTAACAACGGAAGCTCCTTAAAAGCCCTTTTAAGAGTGTAGAACGAAATAGTAAAGCGATTTGCCATCAAGCCATTCAAGGGATTATAATCGTACTTTTGCTGAACTTAAGCATAAAATTTAGTTGCAGCTTATTCACTTGTTTACTTCACTTGATTGGAGACCTTATGGTAGTTTACCTCCTTATGCGCTCTCTTTTATTTGCCCTTATATTCTTTCACTTTTTCTACTTTCGGTTACGGTTACGGTTACGGTTACGGTTACTCATCGAACAAAGTTGATATTTCTTTCAACGAATGATCGAACAAACTTCTGATTCTTTCGACATCTGAACCATCCATTTGCAGGACGAGAGCCACGATTACATTAAGAGGCAGCAGTTACGCGAACTCGCAATGCTAAACTCGAGCTTCCGAGAAGAAAGTCCAGGACCTGGTGGTAGTGTTTCTCCATTCAATTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTAAGCGCTCACATCAATCTCTACCCTAAACAATTTCCACCCCAGTCCAGAAATTCGGTCACTCGTATACCTCAAAGTGAATCACAACCAACTGTGTGACATTGCTACAACCACGAGAAAGGGGAGAGCCTAACTCGAGTTCCCGGTGAGCGTTCTGCTGGCTTTTTCTGTGTTTCTTTAATATTTTTGACAGAAAAGACTTGAAAAAGAAAATAAAAGAGAGGGTAAAAGAAAACAAAAAAAGTGTTAGTATCTGTAGGGAATTCTCATGTTGAGTGTAGGTTTGAATAGGTCAGTTTTTGCAACAAAGTTATATATTCATTGGATTTATTCTTGTGTTAGTGACTGCTGAGGAGTGTGTAGTTTCTACATTATTGATGAACAAACATGAAGAACATTAGGAAGTGATGATGTTGTACTGTTTGATATCTGTTAGGGTATTGTATGCAATGTCAATGTCAATTATATTTTTGGTGCTACTCAGTTTGTGTTTGCTATCAGTTTCATAATAGATTCTTCCTTT

mRNA sequence

GACCATTAACAATCATAGATTTTCCACATTTCAGCCTCCATATTTACAGGCATCCACCCTTGTACTCCTTAGCTCCGCCTCCGCCTCCCTCGTCGGAGCTCTCCTCATCCACCGTCTTCTCCGGCGTCATCGCCGCCTCAATCTTCCAAAGGCCCTTCTTCTACTTTCCAATCCCCAATTCTCTGTATCCGTCTCTGCTCAGAGCAATAAACACAAAGCGCTATGTCAGGTATGTACAGTACCAATTTCTCCCCGGCAAGAACTGCTTCGCCTCACATCAGAACCACTCCTGATGTCGAAAGTCAGTACTTGTCGGAGCTTCTGGCAGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGAGATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGCAGTGCAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGGTTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCGAGCTCGCTCACAGTAAAGAGGATTCTACGTCTGGAAATACCCGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTAAGGGGACGACCTGGCTATGAGCACTTGAACGAACCGTTGCACATCTTGATTGAGGGGGATTTACCAGTCAATATTGTTGATATAAGGCTCAGACAAGCACAGGAAATTATTGAAGAACTGCTCAAACCTGTGGACGAGAGCCACGATTACATTAAGAGGCAGCAGTTACGCGAACTCGCAATGCTAAACTCGAGCTTCCGAGAAGAAAGTCCAGGACCTGGTGGTAGTGTTTCTCCATTCAATTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTAAGCGCTCACATCAATCTCTACCCTAAACAATTTCCACCCCAGTCCAGAAATTCGGTCACTCGTATACCTCAAAGTGAATCACAACCAACTGTGTGACATTGCTACAACCACGAGAAAGGGGAGAGCCTAACTCGAGTTCCCGGTGAGCGTTCTGCTGGCTTTTTCTGTGTTTCTTTAATATTTTTGACAGAAAAGACTTGAAAAAGAAAATAAAAGAGAGGGTAAAAGAAAACAAAAAAAGTGTTAGTATCTGTAGGGAATTCTCATGTTGAGTGTAGGTTTGAATAGGTCAGTTTTTGCAACAAAGTTATATATTCATTGGATTTATTCTTGTGTTAGTGACTGCTGAGGAGTGTGTAGTTTCTACATTATTGATGAACAAACATGAAGAACATTAGGAAGTGATGATGTTGTACTGTTTGATATCTGTTAGGGTATTGTATGCAATGTCAATGTCAATTATATTTTTGGTGCTACTCAGTTTGTGTTTGCTATCAGTTTCATAATAGATTCTTCCTTT

Coding sequence (CDS)

ATGTCAGGTATGTACAGTACCAATTTCTCCCCGGCAAGAACTGCTTCGCCTCACATCAGAACCACTCCTGATGTCGAAAGTCAGTACTTGTCGGAGCTTCTGGCAGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGCAGCCGACTTTTGAATCAAGAGATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGTGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCGAACCTTATATCTAATGTTAGCAGTGCAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGGTTAAGTAGACCCCCTGGGATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCGAGCTCGCTCACAGTAAAGAGGATTCTACGTCTGGAAATACCCGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGGCTTTTGGGACCTCGTGGTAATTCCTTGAAACGGGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTAAGGGGACGACCTGGCTATGAGCACTTGAACGAACCGTTGCACATCTTGATTGAGGGGGATTTACCAGTCAATATTGTTGATATAAGGCTCAGACAAGCACAGGAAATTATTGAAGAACTGCTCAAACCTGTGGACGAGAGCCACGATTACATTAAGAGGCAGCAGTTACGCGAACTCGCAATGCTAAACTCGAGCTTCCGAGAAGAAAGTCCAGGACCTGGTGGTAGTGTTTCTCCATTCAATTCAAGTGGAATGAAACGTGCCAAAACAGGTCGTTAA

Protein sequence

MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR

Homology

[Close]

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.9e-127
Identity = 227/284 (79.93%), Postives = 251/284 (88.38%), Query Frame = 1


Query: 1   MSGMYS-TNFSPARTASPHIRT-TPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEI 60
           MSG+Y+  NFSP+R ASP IRT + DV+SQY+S+LLAEHQK GPFMQVLPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  GL GWNGLP E R+  P GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGK 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEEKL+G+PGYEHLNE LHILIE DLP++IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.2e-126
Identity = 237/287 (82.58%), Postives = 255/287 (88.85%), Query Frame = 1


Query: 1   MSGMY--STNFSPARTASPHIRTTPDVES-QYLSELLAEHQKFGPFMQVLPICSRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP+++S QYL+ELLAEHQK  PFMQVLPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS+ GL GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDES 240
           KGSIKDP+KE+KLRGRPGYEHLNE LHILIE DLP +IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREESPGP--GGSVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + REESPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot
Match: SPIN1_ORYSJ (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.6e-112
Identity = 205/283 (72.44%), Postives = 237/283 (83.75%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTP-DVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEIL 60
           MSG+YS  FSPAR  SP IR+ P DV+SQYL+ELLAEHQK GPFMQVLPICS+LL+QEI+
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60

Query: 61  RVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMD 120
           RVS ++ N GF D DR R RSPSPM+S N  SN S  G S WNGL QE RL  P G +MD
Sbjct: 61  RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQE-RLGFPQGTSMD 120

Query: 121 WQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKG 180
           WQ AP SPSS  VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVE +TGCRV+IRGKG
Sbjct: 121 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 180

Query: 181 SIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHD 240
           SIKDP KE+KLRG+PGYEHL++PLHILIE + P +I+D RLR AQE+IEELLKPVDES D
Sbjct: 181 SIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQD 240

Query: 241 YIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           + KRQQLRELAMLNS+ RE+SP P GSVSPF++ GMKRAKTG+
Sbjct: 241 FYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.9e-78
Identity = 156/280 (55.71%), Postives = 198/280 (70.71%), Query Frame = 1


Query: 2   SGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRV 61
           S   S NFS    + P        + +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVE---QEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGW-NGLPQEQRLSRPPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S A ++GW +  P E+ +S  P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSPAP--NW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+E +LP+ IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S REE     GS+SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-77
Identity = 158/286 (55.24%), Postives = 202/286 (70.63%), Query Frame = 1


Query: 5   YSTNFS--PARTASPH----IRTTPDV---ESQYLSELLAEHQKFGPFMQVLPICSRLLN 64
           YS++ S  P+   SP+    +R+   V   + +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGW-NGLPQEQRLSRPP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N + A ++GW +  P E+ +   P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 GP--NWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPV 244
           IRG+GSIKDP KEE +RG+PGYEHLNEPLHIL+E +LP+ IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + REE     GSVSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Cp4.1LG19g01730 vs. TrEMBL
Match: A0A0A0KXW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337270 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 6.8e-152
Identity = 272/282 (96.45%), Postives = 276/282 (97.87%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDV+SQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVSS GLSGWNGLPQE RLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. TrEMBL
Match: B9MTT7_POPTR (KH domain-containing family protein OS=Populus trichocarpa GN=POPTR_0006s11210g PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 2.7e-140
Identity = 252/282 (89.36%), Postives = 262/282 (92.91%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSG+Y+ NFSPAR ASP IR+TPDV+SQYLSELLAEHQK GPFMQVLP CSRLLNQEI R
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPTCSRLLNQEIFR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGF D DRLRHRSPSPMASSNL+SNV   GLSGWNG+PQE RLS PPGMTMDW
Sbjct: 61  VSGMMSNQGFGDFDRLRHRSPSPMASSNLLSNVGGTGLSGWNGIPQE-RLSGPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           Q APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLN+PLHILIE DLP NIVDIRLRQAQEIIEELLKPVDES D+
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDF 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNS+FREESPGP GSVSPFN+SGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. TrEMBL
Match: A0A061EIY7_THECC (RNA-binding KH domain-containing protein OS=Theobroma cacao GN=TCM_019653 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 3.5e-140
Identity = 253/282 (89.72%), Postives = 261/282 (92.55%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSG+Y+ NFSPAR ASP IR+TPDV+SQYLSELLAEHQK GPFMQVLPICSRLLNQEI R
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGF D DR+RHRSPSPMASSNLISNVS  GL GWN LPQE RLS PPGMTMDW
Sbjct: 61  VSGMMSNQGFGDFDRMRHRSPSPMASSNLISNVSGTGLGGWNSLPQE-RLSGPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           Q APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLN+PLHILIE DLP NIVDIRLRQAQEIIEELLKPVDES D+
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDF 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNS+FREESPGP GSVSPFNSSGMKR KTGR
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. TrEMBL
Match: I1L6X0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G271700 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.6e-140
Identity = 251/282 (89.01%), Postives = 261/282 (92.55%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSG+Y+ NFSPAR ASP IR+ P+V+SQYLSELLAEHQK GPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGM+SNQGF D DRLRHRSPSPMASSNL+SNVS  GL GWN L QEQRL   PGMTMDW
Sbjct: 61  VSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQEQRLCGAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDES DY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELA+LNS+FREESPGP GSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Cp4.1LG19g01730 vs. TrEMBL
Match: M5WJA4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009701mg PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.3e-139
Identity = 251/282 (89.01%), Postives = 262/282 (92.91%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSG+Y+ NFSPAR ASP IR+TPDV+SQYLSELLAEHQK GPFMQVLPICSRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGF D DR+RHRSPSPMASSNL+SNV+  GL GWNGLPQE RL  P GMTMDW
Sbjct: 61  VSGMMSNQGFGDFDRMRHRSPSPMASSNLMSNVTGTGLGGWNGLPQE-RLGGPHGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           Q APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDES D+
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDF 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELA+LNS+FREESPGP GSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. TAIR10
Match: AT3G08620.1 (AT3G08620.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 456.1 bits (1172), Expect = 1.6e-128
Identity = 227/284 (79.93%), Postives = 251/284 (88.38%), Query Frame = 1


Query: 1   MSGMYS-TNFSPARTASPHIRT-TPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEI 60
           MSG+Y+  NFSP+R ASP IRT + DV+SQY+S+LLAEHQK GPFMQVLPICSRLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTM 120
            R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  GL GWNGLP E R+  P GM M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGK 180
           +WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESH 240
           GSIKDP+KEEKL+G+PGYEHLNE LHILIE DLP++IVDI+LRQAQEIIEEL+KPVDES 
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           DYIKRQQLRELA+LNS+ RE SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Cp4.1LG19g01730 vs. TAIR10
Match: AT2G38610.1 (AT2G38610.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 451.1 bits (1159), Expect = 5.2e-127
Identity = 237/287 (82.58%), Postives = 255/287 (88.85%), Query Frame = 1


Query: 1   MSGMY--STNFSPARTASPHIRTTPDVES-QYLSELLAEHQKFGPFMQVLPICSRLLNQE 60
           MSG+Y  S+ FSPAR ASP IR+TP+++S QYL+ELLAEHQK  PFMQVLPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMT 120
           + RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS+ GL GWNGL QE RLS  PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRG 180
           MDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDES 240
           KGSIKDP+KE+KLRGRPGYEHLNE LHILIE DLP +IV+IRLRQAQEIIEELLKPVDES
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 HDYIKRQQLRELAMLNS-SFREESPGP--GGSVSPFNSSGMKRAKTG 282
            D+IKRQQLRELA+LNS + REESPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Cp4.1LG19g01730 vs. TAIR10
Match: AT4G26480.1 (AT4G26480.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-79
Identity = 156/280 (55.71%), Postives = 198/280 (70.71%), Query Frame = 1


Query: 2   SGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRV 61
           S   S NFS    + P        + +YLSELLAE  K  PF+ VLP   RL+NQEILRV
Sbjct: 37  SAPQSPNFSGGLRSQPSFLVE---QEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRV 96

Query: 62  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGW-NGLPQEQRLSRPPGMTMDW 121
           + ++ N     L + R   PSP+AS  +  N S A ++GW +  P E+ +S  P    +W
Sbjct: 97  TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSPAP--NW 156

Query: 122 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 181
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 157 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 216

Query: 182 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 241
           IKDP KE+ +RG+PGYEHLNEPLHIL+E +LP+ IVD RL QA+EI+++LL PV+E+HD+
Sbjct: 217 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 276

Query: 242 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
            K+QQLRELA+LN S REE     GS+SP+NS GMKRAKT
Sbjct: 277 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Cp4.1LG19g01730 vs. TAIR10
Match: AT5G56140.1 (AT5G56140.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 291.2 bits (744), Expect = 6.9e-79
Identity = 158/286 (55.24%), Postives = 202/286 (70.63%), Query Frame = 1


Query: 5   YSTNFS--PARTASPH----IRTTPDV---ESQYLSELLAEHQKFGPFMQVLPICSRLLN 64
           YS++ S  P+   SP+    +R+   V   + +YLSELLAE  K  PF+ VLP   RLLN
Sbjct: 32  YSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLN 91

Query: 65  QEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGW-NGLPQEQRLSRPP 124
           QEILRV+ ++ N        L H  PSP+AS  +  N + A ++GW +  P E+ +   P
Sbjct: 92  QEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQN-ARADMNGWASQFPSERSVPSSP 151

Query: 125 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 184
           G   +W ++P S S L  KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVE +T CRV 
Sbjct: 152 GP--NWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVL 211

Query: 185 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPV 244
           IRG+GSIKDP KEE +RG+PGYEHLNEPLHIL+E +LP+ IVD RL QA+EI+++LL P+
Sbjct: 212 IRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPM 271

Query: 245 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKT 281
           +E+HD  K+QQLRELA+LN + REE     GSVSP+NS GMKRAKT
Sbjct: 272 EETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Cp4.1LG19g01730 vs. TAIR10
Match: AT1G09660.1 (AT1G09660.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-68
Identity = 147/283 (51.94%), Postives = 184/283 (65.02%), Query Frame = 1


Query: 10  SPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILRVSGMMSNQG 69
           SP R+  P     P    +YL+ELL E QK GPF+QV+P C RLLN EI RVS       
Sbjct: 31  SPNRSPCP-----PSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------ 90

Query: 70  FCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQE-----QRLSRPPGMT-MDWQSA 129
           F DLDR  H SP    S    +N     L GW+ +  E     QR S   G + + W   
Sbjct: 91  FPDLDRYEHGSP--FRSLGQPTN-GKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGM 150

Query: 130 PASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSIKD 189
           P  P+   VK+++RL++PVD YP++NFVGR+LGPRGNSLKRVE+ T CRV+IRG+GS+KD
Sbjct: 151 PGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKD 210

Query: 190 PDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDYIKR 249
             KEEKL+G+PGYEHL EPLH+LIE +LP +I++ RL  A   +E LLKP+DES D+ KR
Sbjct: 211 TVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKR 270

Query: 250 QQLRELAMLNSSFREESPGP------GGSVSPFNSSGMKRAKT 281
           +QL+ELA LN + REESP P        S+SPFNS   KRAKT
Sbjct: 271 EQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296

[Close]

BLAST of Cp4.1LG19g01730 vs. NCBI nr
Match: gi|659126644|ref|XP_008463292.1| (PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis melo])

HSP 1 Score: 552.0 bits (1421), Expect = 6.1e-154
Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDV+SQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSS GLSGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Cp4.1LG19g01730 vs. NCBI nr
Match: gi|778694054|ref|XP_011653733.1| (PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 1.4e-153
Identity = 273/282 (96.81%), Postives = 277/282 (98.23%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDV+SQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVSS GLSGWNGLPQEQRLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQEQRLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Cp4.1LG19g01730 vs. NCBI nr
Match: gi|659126646|ref|XP_008463293.1| (PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Cucumis melo])

HSP 1 Score: 545.8 bits (1405), Expect = 4.4e-152
Identity = 273/282 (96.81%), Postives = 276/282 (97.87%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDV+SQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVSS GLSGWNGLPQE RLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. NCBI nr
Match: gi|449449831|ref|XP_004142668.1| (PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Cucumis sativus])

HSP 1 Score: 544.7 bits (1402), Expect = 9.8e-152
Identity = 272/282 (96.45%), Postives = 276/282 (97.87%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSGMYSTNFSPARTASPHIRTTPDV+SQYLSELLAEHQKFGPFMQVLPIC RLLNQEILR
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQEILR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVSS GLSGWNGLPQE RLSR PGMTMDW
Sbjct: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQE-RLSRAPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS
Sbjct: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLNEPLHILIE DLP N+VDIRLRQAQEIIEELLKPVDESHDY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESHDY 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Cp4.1LG19g01730 vs. NCBI nr
Match: gi|743811205|ref|XP_011018951.1| (PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Populus euphratica])

HSP 1 Score: 506.5 bits (1303), Expect = 2.9e-140
Identity = 252/282 (89.36%), Postives = 262/282 (92.91%), Query Frame = 1


Query: 1   MSGMYSTNFSPARTASPHIRTTPDVESQYLSELLAEHQKFGPFMQVLPICSRLLNQEILR 60
           MSG+Y+ NFSPARTASP IR+TPDV+SQYLSELLAEHQK GPFMQVLP CSRLLNQEI R
Sbjct: 1   MSGLYNPNFSPARTASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPTCSRLLNQEIFR 60

Query: 61  VSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSSAGLSGWNGLPQEQRLSRPPGMTMDW 120
           VSGMMSNQGF D DRLRHRSPSPMASSNL+SNV   GLSGWNG+PQE RL  PPGMTMDW
Sbjct: 61  VSGMMSNQGFGDFDRLRHRSPSPMASSNLLSNVGGTGLSGWNGIPQE-RLGGPPGMTMDW 120

Query: 121 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 180
           Q APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEGDLPVNIVDIRLRQAQEIIEELLKPVDESHDY 240
           IKDPDKEEKLRGRPGYEHLN+PLHILIE DLP NIVDIRLRQAQEIIEELLKPVDES D+
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDF 240

Query: 241 IKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 283
           IKRQQLRELAMLNS+FREESPGP GSVSPFN+SGMKRAKTGR
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTGR 281

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g01730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
QKIL4_ARATH	2.9e-127	79.93	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2...	[more]
QKIL3_ARATH	9.2e-126	82.58	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1...	[more]
SPIN1_ORYSJ	2.6e-112	72.44	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1...	[more]
QKIL1_ARATH	1.9e-78	55.71	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2...	[more]
QKIL2_ARATH	1.2e-77	55.24	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2...	[more]

BLAST of Cp4.1LG19g01730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXW7_CUCSA	6.8e-152	96.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G337270 PE=4 SV=1	[more]
B9MTT7_POPTR	2.7e-140	89.36	KH domain-containing family protein OS=Populus trichocarpa GN=POPTR_0006s11210g ...	[more]
A0A061EIY7_THECC	3.5e-140	89.72	RNA-binding KH domain-containing protein OS=Theobroma cacao GN=TCM_019653 PE=4 S...	[more]
I1L6X0_SOYBN	4.6e-140	89.01	Uncharacterized protein OS=Glycine max GN=GLYMA_09G271700 PE=4 SV=1	[more]
M5WJA4_PRUPE	1.3e-139	89.01	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009701mg PE=4 SV=1	[more]

BLAST of Cp4.1LG19g01730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08620.1	1.6e-128	79.93	RNA-binding KH domain-containing protein	[more]
AT2G38610.1	5.2e-127	82.58	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	1.1e-79	55.71	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	6.9e-79	55.24	RNA-binding KH domain-containing protein	[more]
AT1G09660.1	7.1e-68	51.94	RNA-binding KH domain-containing protein	[more]

BLAST of Cp4.1LG19g01730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126644\|ref\|XP_008463292.1\|	6.1e-154	97.16	PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis melo]	[more]
gi\|778694054\|ref\|XP_011653733.1\|	1.4e-153	96.81	PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis sativ...	[more]
gi\|659126646\|ref\|XP_008463293.1\|	4.4e-152	96.81	PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Cucumis melo]	[more]
gi\|449449831\|ref\|XP_004142668.1\|	9.8e-152	96.45	PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Cucumis sativ...	[more]
gi\|743811205\|ref\|XP_011018951.1\|	2.9e-140	89.36	PREDICTED: KH domain-containing protein At2g38610-like isoform X2 [Populus euphr...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g01730.1	Cp4.1LG19g01730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 132..232 score: 2.
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 132..260 score: 1.7
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 149..209 score: 3.
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 139..255 score: 3.6
None	No IPR available	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 1..282 score: 1.3E
None	No IPR available	PANTHER	PTHR11208:SF59	SUBFAMILY NOT NAMED	coord: 1..282 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG19g01730	Cucsa.130740	Cucumber (Gy14) v1	cgycpeB0345
Cp4.1LG19g01730	CmaCh03G002770	Cucurbita maxima (Rimu)	cmacpeB672
Cp4.1LG19g01730	CmaCh07G012020	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g01730	CmoCh03G002890	Cucurbita moschata (Rifu)	cmocpeB625
Cp4.1LG19g01730	CmoCh07G012450	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g01730	Cla018062	Watermelon (97103) v1	cpewmB473
Cp4.1LG19g01730	Cla012050	Watermelon (97103) v1	cpewmB491
Cp4.1LG19g01730	Csa3G727970	Cucumber (Chinese Long) v2	cpecuB485
Cp4.1LG19g01730	Csa4G337270	Cucumber (Chinese Long) v2	cpecuB486
Cp4.1LG19g01730	MELO3C009095	Melon (DHL92) v3.5.1	cpemeB441
Cp4.1LG19g01730	MELO3C025257	Melon (DHL92) v3.5.1	cpemeB459
Cp4.1LG19g01730	ClCG10G022830	Watermelon (Charleston Gray)	cpewcgB421
Cp4.1LG19g01730	ClCG04G006180	Watermelon (Charleston Gray)	cpewcgB436
Cp4.1LG19g01730	CSPI04G16780	Wild cucumber (PI 183967)	cpecpiB487
Cp4.1LG19g01730	CSPI03G30520	Wild cucumber (PI 183967)	cpecpiB486
Cp4.1LG19g01730	Lsi01G016340	Bottle gourd (USVL1VR-Ls)	cpelsiB391
Cp4.1LG19g01730	Lsi03G022910	Bottle gourd (USVL1VR-Ls)	cpelsiB403
Cp4.1LG19g01730	MELO3C025257.2	Melon (DHL92) v3.6.1	cpemedB542
Cp4.1LG19g01730	MELO3C031041.2	Melon (DHL92) v3.6.1	cpemedB524
Cp4.1LG19g01730	CsaV3_3G032980	Cucumber (Chinese Long) v3	cpecucB0597
Cp4.1LG19g01730	CsaV3_4G027380	Cucumber (Chinese Long) v3	cpecucB0598
Cp4.1LG19g01730	Bhi03G001786	Wax gourd	cpewgoB0598
Cp4.1LG19g01730	Bhi11G001436	Wax gourd	cpewgoB0586
Cp4.1LG19g01730	CsGy4G016100	Cucumber (Gy14) v2	cgybcpeB520
Cp4.1LG19g01730	CsGy3G028370	Cucumber (Gy14) v2	cgybcpeB377
Cp4.1LG19g01730	Carg12637	Silver-seed gourd	carcpeB0400
Cp4.1LG19g01730	Carg19534	Silver-seed gourd	carcpeB0893

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG19g01730	Cp4.1LG10g07270	Cucurbita pepo (Zucchini)	cpecpeB077

The following block(s) are covering this gene:

None