Carg19534 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19534
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Kh domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_104 : 289122 .. 294899 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCATTTCAGCTTCTATACCTCTGCCTCCGCCTCCATCGTCGGAACTGTTCTTATCCACCGTCTTCGCCGGCGACATCGCCGTCTCCATCTTCCGACATCCCTCTTCCATTTCCCAATCCTCCGATTCTCAGAACATCCATTGCTGCTCACAGTTCAATAGCCAAAGGCCATGTCCGGTATGTACGGTACCAACTTCTCCCCTGCAAGAACTGCTTCGCCTCACATCAGGACTACTCCTGATGGAGACAGGTACCACCTCCGATAATCCACTTCCGAGAATTTTCCTTCTGTTTAATTTAACGATTCTAGAGTTTGCTCAGCTTGTTAAAGCTGAGATTACTAATTGAATAATCAATCCCCCCTTTGGTTCTTTGTTTTTTAATCTTTAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGTAGCCGACTTTTGAATCAAGGTAGTGCTCTTCTCTGAATTTTTGGTGTTCCTGAATTTATTTCAGTGCTTAATTATTGCGGCGGTGTTTATGTGTATGTCTAGATCGGTGAAGCTGGTGAACTTCTCCTTTTCCTCTTTAGTATAATTAGCGATTGCTCTCTTTGCCCTTGGGGTTGACTGTTGAATTGTGCATATGTTAGTCTTGAATAATCTCTTTCACTTTCTTGAATCTGGTTTTGCGGAATTCTGTTCTTTTGAGTGCTGGAAAAATCTTAGCTACTCTTGTTGGGTGCTTAATTCTTCTAGTTCATGATGTTCTACATGTTATGCATATCCATTCTGTTAGATTGTTCTTCTTAAGTTTCGGAGAGTTATGCATTCTTTATACTAATATCTTGTACAAAAGTCTCTCCTGATGTATCACTGTCATGAACTAATATACCATTGAAAGACCAAAAGCCTCGTGCATACATTAAGCTTTGAAAAGCGATTTTCAAGCTTTTTGTGTTATAAGAACTGAAGGTTTAAGTCATCAAGTTCGGTTTAGAATGTTATTAGATATTTATTAATTCTTGTTATGTCAATACGGGAGTATATGATGTCTACACCTGTCATGTCTACACCTGTCAAAGCTAAATACCTCAAAATATATTATAGGAGATGTGTTTAGTTGTTAATTCTTCTTACCCATATTATCTGCTATCAACGATTTCCAAATGCTTTCTAAAATTTTCTCTATATCACCTTTTTCTAAATTTTTTTATGAGGAATGAGACTAGATGACCCAAGTTCTAGTGGGCTGACTCTTGAGGGTGAGAATAAGTGGTGCACAATAACGTTGCGAGTCCTGACAAAGTGCGATTGTGACACCAAAATGATTTTTTTTGGTGCGAATCCCGACCTTTCATTTAACATTTTAACGAATTTTCTACTCTAAAAGTAATTTTGAATTATTTACAAAAATGTGTAATTTTGAAAAAATAAAGATTATTTATAATTTGAAAATATTGTAAAGAATGAAACAAGTGGACTTCGTCTTCAAATCTTAGCTGTATCATGAAGTGGTGGTTCCATTTGGACCCAATATATAATCTATTCATCAGTAGTGGAGGTTTGAATTCATCTAAATTGGTGATGCGACAATCTCATGCTGACAATCTGTTCTTTTTTGGTCATTCACTATAACTTAGTCTTTGACATAAGAACTGAAGGCTGGATGTTGAATGTGGTAAAGCTTTTCAAGTGAAGGCTAATCATTTAAGGCCTCGAAATATGTAGTAGTTTTAGAACTCAAAGTGTGAATAAAAAAAAACGGTGCTCTTAGTAGACCTTGTGTAAGAGCTTCCTCGATCAGGATCTATTCGTTAGGTTGTACCTCTTGCATTTTTGAGTTCTAAGTCTAGTGCTGTTCGAACTTACGGAGTTGTCCTTGGATTCTTTGGCGTTTGATAGTCACGTAATGCTCCAAGGCTCAAGTTTCAACCTCCATTTAAATTGCCATATTGGGTGTTGATGAACTTCATCCTGCTCTGAACAGCATAGTATTTGTTTGCACTTCCTAATTGATCTTGTTATAGAGTTCGGTTTTGTTTATAAGTATTCTTCTCTGTACTTAATGCACAAATATATTTCTATATCTTCCTTTTGGTATGTTTCTGCTTTTCCATTCTGTCGGTAACTTCTAACAGCAAGCTCTTTAAATGCAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATATCTAATGTTAGTACCACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGGTAATTACTATTTTAGCATCAAAACTCCATTGGTAACTCCTGATACCTGTTGATCTCGTCATTTTGAGTACAATTTTAGTATGTTTTGATATATAGGCTAACATATGCCATCATTGTTACTCGATAGTTTGAAGGTAACATTGTAATTCTCCCTCTAAAGTAGGCTCGTAGCTTGAGGGATTGGGGCTGCAATAAATGTTGCAGTGTGCCATTATTTATAGCTAATTACAAAAGTTTGTTCGTCACTTTATTTAATATGAATTCTGGGAATATATGCAGCGAGAGAAGGAGCGGACTTGAATTTGTCTTTAACTCAGTATTTGTTCTTGAGTTGAACACGTCTCATGAAATTGATAGTTTCTTTTCCATTAGTTAATCTTCTTATTTTTGTGTGTTTGTTTGTTCGTTCTCAATAAGATTGTAATAATACTAATTAATTTTCTTATTGAGATCTAATTTTCTCTCATAGATGGGAAAAAACGTGAAACTTATTATTTTTTTCTGTAAGAAACTGTGCTTTCATATAGAGAAATGAAAGAACTAGATCTACCAGGGAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGACCTGTTGAAATTACAAAAAGTGGAACTTGCCTACTGTAACGACCCAAGACCACTGCTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTTCCGGCTTCCCTTCAAGGTTTTTAAAACGCGTCTGTTAGGGAGAGATTTCCACACTCTTATAAAGGATGCTTCATTCTCTTCTCTAACTGATGTGGGATCTCACGCCTATGTTAAGAGCTTATAGCCTTGAGTACTTTTCTAGCATGTAAACTTCCAATCTTGAAAATCTCACTCCAATGACTTAAAAAATAAAAGAAGTGTGAGAGGATTTCTTTGGCTCCATGTTTAGGCTTGTGATAATGAATATATTTTACTATTTTTTTACTTTCTCGTTTGAGTGGCCAAAAAATTCTTCGCCATTCTTGAGGATTGCCTTGCACGGGTTACGCTTATTGGTTCTCCACTTTAAAACTCAACTGAAAGCATCATCTATAAGACAAAAGAAGAAGAAGAAAAAAGAAAAAAAGAATTAGTAACAAATCTGGATAATCCCAATGTTTCTAACAAAAATTGGCCTCTTGATGTAACATTATTCGAAGTTATTACAAGAACTATTGAAGAATGTTTCAACAATATATAGATGGCATTATGATAATGTTTTTCCAGGCTACTTTTTTCTGTTGCAGTTCTTTCATCTTCATTTTGGGCCCCATGATTGATTATTTGATCGTTGCATACTGATATCTCCTGCACTTCCAGTCCTCATATCCTGTTATATTCATACAGAATTCTTTCTATGTTAATTAGTCTTCAGGATGGTTTTGTTTTAAAAAAGTTGTATTAATATGGTAGAACCTTTTGAAACATACAGCAGAGATTAAGTAGAGCCACCGGAATGACAATGGACTGGCAAAGTGCACCTGCGAGTCCTAGTTCCCTCACCGTGAAGAGAATTCTACGTTTGGAAATACCTGTGGATACTTACCCCAATGTAAGTTCTGTCGAAGTACAGATGTTTTTTGTTTGCTGGTCATACGCTAGCTGGTTTGTACGACCTGTACGTACACAAACCTATATATTAATACTTGAAGTTTCTGCTCTTTGTGGATGTCAGTTCAATTTTGTAGGGCGACTTTTGGGTCCTCGGGGAAATTCCTTGAAACGTGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGGTAAAGGATCCAGACAAGGTACTATAAGGGTATCTCTAATTTGGAATCAATGTATCACATGATGGATCTCTCAAGAATCAAGACTATTGTAGAGATATTTTGCTTCTCTCATTGGATTGTTATCATTCTGTTAAGCAGTAGTATTGGTTATAAATTGTATTCGTACTTAATTTGTTTAACTTTTACATTGTCAAGGAAGAGAAGTTACGGGGACGACCCGGCTACGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGATTTACCAGCCAATATTGTTGATATAAGGCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGTATATTTTTTACCTTCGATACGTTTTTTGAGCGATTTTGGCTGGCTAAAGTCACTCTTTTCATGCTCAAAAGTACTTCACACTAAAATCATCATGTTATAAAAGCGTTCCCATACACCTTTATATTTATTTTACTCAAAGCCTTGTTCTTTTAATATTGGTAAAACATACCGGTTTAATTCCAACTCATTTACTATATTATGAAACTAAAGTTGCTTTCAAGAACCTTCTTGATTCAATGGGCCAAGTTATCATTCTTACCCATGTTAATCATCAACCCTTCATGGATTTCTTGCATTCCTCAACCTTTGATGCAATCGAATCAGATTTTTCTTTTTTCTTTTCCTCGAACACGCCGTGTTCTAACAGACTTCTGATTCTTTTGGCATGTGAATCATCAACTTGCAGGACGAGAGCCAAGATTACATAAAAAGGCAGCAGCTACGCGAACTCGCTATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAGCGTCTCTCCATTCAACTCAAGCGGAATGAAACGTGCCAAAACAGGTCGTTAAGTGCTCATATCCCTTTCTTACCTTAAATAATTTCTACCCCAGTCCAGAATTCAGTCACTTGTATAACTCGATGTGAATCTGACCGACCGTGTGACGTAGCTAGGAGTAAGGGGAGGCTAACTTCAGTTCCAGGTGAGCCTTCTCTCTGTGTTCCTTTAATATTCTTGACAGAAAGACTGGAAAAAGTTCAAAAAAAAAAAGAGAGTGAAAAGGAAAAAAACAATAGGGGATGGATTATATGTTGAGTGTAGGTTTGAATAGGTCAGTTTTTCCAACAAAGTTAATATATTCATTGGATTTATTCTTGTGTTAGGGACTGCTGAAGAGTGTGTAGTTTTACATTATTAATGCAAAAACATTAGGAAGTGATGAATGTAATATTGTTTGATATTTCTTAGGTGTTGTAATGTAAGCAATGTCAGTGTCAATTATATTTTTGGAATGATATATGAAAGAACAGTGCAAAAACTCAATCAATGTGCTGCTCAGTCTGTGTTTGCTATCAAGTTTCAGAATATGATTCTCCTCTCTTTTTTTCCATTTGCTGAAAAAGTTGTGAACATATGCCTCGACTTTTCCGACACGTACCGTTTAGTTGTTCTCGATGTACTTTTTGCTATGTTTTTGGACCATTAAGAGTGTAGGTGGGTCGGTTTGGATTGACTTTTGAATAATGTTGTGATTGAATTGAGACTTCCATTCAAGGGAAGTGAACAATCAACTGAGTGGATGAAGTTTGATCGATAAACTCACAAAGGT

mRNA sequence

TCCTCATTTCAGCTTCTATACCTCTGCCTCCGCCTCCATCGTCGGAACTGTTCTTATCCACCGTCTTCGCCGGCGACATCGCCGTCTCCATCTTCCGACATCCCTCTTCCATTTCCCAATCCTCCGATTCTCAGAACATCCATTGCTGCTCACAGTTCAATAGCCAAAGGCCATGTCCGGTATGTACGGTACCAACTTCTCCCCTGCAAGAACTGCTTCGCCTCACATCAGGACTACTCCTGATGGAGACAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGTAGCCGACTTTTGAATCAAGCAAGCTCTTTAAATGCAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATATCTAATGTTAGTACCACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGAGCCACCGGAATGACAATGGACTGGCAAAGTGCACCTGCGAGTCCTAGTTCCCTCACCGTGAAGAGAATTCTACGTTTGGAAATACCTGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGACTTTTGGGTCCTCGGGGAAATTCCTTGAAACGTGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGGTAAAGGATCCAGACAAGGAAGAGAAGTTACGGGGACGACCCGGCTACGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGATTTACCAGCCAATATTGTTGATATAAGGCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGACGAGAGCCAAGATTACATAAAAAGGCAGCAGCTACGCGAACTCGCTATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAGCGTCTCTCCATTCAACTCAAGCGGAATGAAACGTGCCAAAACAGGTCGTTAAGTGCTCATATCCCTTTCTTACCTTAAATAATTTCTACCCCAGTCCAGAATTCAGTCACTTGTATAACTCGATGTGAATCTGACCGACCGTGTGACGTAGCTAGGAGTAAGGGGAGGCTAACTTCAGTTCCAGGTGAGCCTTCTCTCTGTGTTCCTTTAATATTCTTGACAGAAAGACTGGAAAAAGTTCAAAAAAAAAAAGAGAGTGAAAAGGAAAAAAACAATAGGGGATGGATTATATGTTGAGTGTAGGTTTGAATAGGTCAGTTTTTCCAACAAAGTTAATATATTCATTGGATTTATTCTTGTGTTAGGGACTGCTGAAGAGTGTGTAGTTTTACATTATTAATGCAAAAACATTAGGAAGTGATGAATGTAATATTGTTTGATATTTCTTAGGTGTTGTAATGTAAGCAATGTCAGTGTCAATTATATTTTTGGAATGATATATGAAAGAACAGTGCAAAAACTCAATCAATGTGCTGCTCAGTCTGTGTTTGCTATCAAGTTTCAGAATATGATTCTCCTCTCTTTTTTTCCATTTGCTGAAAAAGTTGTGAACATATGCCTCGACTTTTCCGACACGTACCGTTTAGTTGTTCTCGATGTACTTTTTGCTATGTTTTTGGACCATTAAGAGTGTAGGTGGGTCGGTTTGGATTGACTTTTGAATAATGTTGTGATTGAATTGAGACTTCCATTCAAGGGAAGTGAACAATCAACTGAGTGGATGAAGTTTGATCGATAAACTCACAAAGGT

Coding sequence (CDS)

ATGTCCGGTATGTACGGTACCAACTTCTCCCCTGCAAGAACTGCTTCGCCTCACATCAGGACTACTCCTGATGGAGACAGTCAGTACTTGTCGGAGCTACTAGCGGAGCATCAGAAGTTCGGCCCCTTCATGCAAGTTCTTCCGATCTGTAGCCGACTTTTGAATCAAGCAAGCTCTTTAAATGCAGAAATATTGCGGGTTTCTGGAATGATGTCCAACCAGGGTTTCTGCGACCTCGATAGGCTTCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATATCTAATGTTAGTACCACAGGTTTGAGTGGCTGGAATGGTCTTCCTCAGGAGCAGAGATTAAGTAGAGCCACCGGAATGACAATGGACTGGCAAAGTGCACCTGCGAGTCCTAGTTCCCTCACCGTGAAGAGAATTCTACGTTTGGAAATACCTGTGGATACTTACCCCAATTTCAATTTTGTAGGGCGACTTTTGGGTCCTCGGGGAAATTCCTTGAAACGTGTGGAAGTTACTACAGGTTGTCGTGTATACATTCGAGGGAAAGGGTCGGTAAAGGATCCAGACAAGGAAGAGAAGTTACGGGGACGACCCGGCTACGAGCACTTGAACGAACCACTGCACATCTTGATTGAGGCAGATTTACCAGCCAATATTGTTGATATAAGGCTCAGACAGGCACAAGAAATTATTGAAGAACTGCTCAAACCTGTGGACGAGAGCCAAGATTACATAAAAAGGCAGCAGCTACGCGAACTCGCTATGCTAAATTCAAGTTTCAGAGAAGACAGTCCAGGACCTGGTGGTAGCGTCTCTCCATTCAACTCAAGCGGAATGAAACGTGCCAAAACAGGTCGTTAA

Protein sequence

MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRATGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR

Homology

[Close]

BLAST of Carg19534 vs. NCBI nr
Match: XP_022950933.1 (KH domain-containing protein At2g38610-like isoform X1 [Cucurbita moschata] >XP_023543333.1 KH domain-containing protein At2g38610-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.6 bits (1433), Expect = 4.9e-155
Identity = 282/288 (97.92%), Postives = 282/288 (97.92%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ    
Sbjct: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg19534 vs. NCBI nr
Match: XP_022978251.1 (KH domain-containing protein At2g38610-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 555.1 bits (1429), Expect = 1.4e-154
Identity = 281/288 (97.57%), Postives = 282/288 (97.92%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ    
Sbjct: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRL+HRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLQHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg19534 vs. NCBI nr
Match: XP_022950934.1 (KH domain-containing protein At2g38610-like isoform X2 [Cucurbita moschata] >XP_023543334.1 KH domain-containing protein At2g38610-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.1 bits (1416), Expect = 4.6e-153
Identity = 281/288 (97.57%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ    
Sbjct: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQE RLSRAT
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQE-RLSRAT 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Carg19534 vs. NCBI nr
Match: XP_022978253.1 (KH domain-containing protein At2g38610-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 548.5 bits (1412), Expect = 1.3e-152
Identity = 280/288 (97.22%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ    
Sbjct: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRL+HRSPSPMASSNLISNVSTTGLSGWNGLPQE RLSRAT
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLQHRSPSPMASSNLISNVSTTGLSGWNGLPQE-RLSRAT 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Carg19534 vs. NCBI nr
Match: XP_011653733.1 (PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis sativus])

HSP 1 Score: 538.9 bits (1387), Expect = 1.1e-149
Identity = 271/288 (94.10%), Postives = 277/288 (96.18%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMY TNFSPARTASPHIRTTPD DSQYLSELLAEHQKFGPFMQVLPIC RLLNQ    
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVS+TGLSGWNGLPQEQRLSRA 
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQEQRLSRAP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DES DYIKRQQLRELAMLNSSFRE+SPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of Carg19534 vs. TAIR10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 444.1 bits (1141), Expect = 6.5e-125
Identity = 227/290 (78.28%), Postives = 250/290 (86.21%), Query Frame = 0


Query: 1   MSGMYG-TNFSPARTASPHIRT-TPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQAS 60
           MSG+Y   NFSP+R ASP IRT + D DSQY+S+LLAEHQK GPFMQVLPICSRLLNQ  
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQ-- 60

Query: 61  SLNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSR 120
               EI R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  GL GWNGLP E R+  
Sbjct: 61  ----EIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGG 120

Query: 121 ATGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCR 180
             GM M+WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCR
Sbjct: 121 PHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR 180

Query: 181 VYIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLK 240
           VYIRGKGS+KDP+KEEKL+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+K
Sbjct: 181 VYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVK 240

Query: 241 PVDESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           PVDESQDYIKRQQLRELA+LNS+ RE+SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 PVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Carg19534 vs. TAIR10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 443.7 bits (1140), Expect = 8.5e-125
Identity = 238/293 (81.23%), Postives = 255/293 (87.03%), Query Frame = 0


Query: 1   MSGMYGTN--FSPARTASPHIRTTPDGD-SQYLSELLAEHQKFGPFMQVLPICSRLLNQA 60
           MSG+Y  +  FSPAR ASP IR+TP+ D SQYL+ELLAEHQK  PFMQVLPICSRLLNQ 
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQ- 60

Query: 61  SSLNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLS 120
                E+ RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS TGL GWNGL QE RLS
Sbjct: 61  -----EMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLS 120

Query: 121 RATGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGC 180
              GMTMDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGC
Sbjct: 121 GTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGC 180

Query: 181 RVYIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELL 240
           RV+IRGKGS+KDP+KE+KLRGRPGYEHLNE LHILIEADLPA+IV+IRLRQAQEIIEELL
Sbjct: 181 RVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELL 240

Query: 241 KPVDESQDYIKRQQLRELAMLNS-SFREDSPGP--GGSVSPFNSSGMKRAKTG 288
           KPVDESQD+IKRQQLRELA+LNS + RE+SPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 KPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Carg19534 vs. TAIR10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-74
Identity = 150/280 (53.57%), Postives = 194/280 (69.29%), Query Frame = 0


Query: 8   NFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEILRV 67
           NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQ      EILRV
Sbjct: 43  NFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQ------EILRV 102

Query: 68  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGW-NGLPQEQRLSRATGMTMDW 127
           + ++ N     L + R   PSP+AS  +  N S   ++GW +  P E+ +S  +    +W
Sbjct: 103 TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVS--SSPAPNW 162

Query: 128 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 187
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 163 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 222

Query: 188 VKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDY 247
           +KDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+ D+
Sbjct: 223 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 282

Query: 248 IKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKT 287
            K+QQLRELA+LN S RE+     GS+SP+NS GMKRAKT
Sbjct: 283 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Carg19534 vs. TAIR10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 273.9 bits (699), Expect = 1.2e-73
Identity = 146/260 (56.15%), Postives = 185/260 (71.15%), Query Frame = 0


Query: 28  QYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEILRVSGMMSNQGFCDLDRLRHRSP 87
           +YLSELLAE  K  PF+ VLP   RLLNQ      EILRV+ ++ N        L H  P
Sbjct: 64  KYLSELLAERHKLTPFLPVLPHAFRLLNQ------EILRVTTLLENATVLSQSGLDH--P 123

Query: 88  SPMASSNLISNVSTTGLSGW-NGLPQEQRLSRATGMTMDWQSAPASPSSLTVKRILRLEI 147
           SP+AS  +  N +   ++GW +  P E+ +  + G   +W ++P S S L  KR +R++I
Sbjct: 124 SPLASGGIFQN-ARADMNGWASQFPSERSVPSSPG--PNWLNSPGSSSGLIAKRTIRVDI 183

Query: 148 PVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSVKDPDKEEKLRGRPGYEHLN 207
           PVD YPNFNFVGRLLGPRGNSLKRVE +T CRV IRG+GS+KDP KEE +RG+PGYEHLN
Sbjct: 184 PVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLN 243

Query: 208 EPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSSFREDS 267
           EPLHIL+EA+LP  IVD RL QA+EI+++LL P++E+ D  K+QQLRELA+LN + RE+ 
Sbjct: 244 EPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEG 303

Query: 268 PGPGGSVSPFNSSGMKRAKT 287
               GSVSP+NS GMKRAKT
Sbjct: 304 SPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Carg19534 vs. TAIR10
Match: AT1G09660.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-63
Identity = 136/268 (50.75%), Postives = 173/268 (64.55%), Query Frame = 0


Query: 6   GTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEIL 65
           G   SP R+  P     P    +YL+ELL E QK GPF+QV+P C RLLN       EI 
Sbjct: 27  GFRASPNRSPCP-----PSDRERYLTELLQERQKLGPFLQVMPNCCRLLNH------EIR 86

Query: 66  RVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQ--RLSRATGM- 125
           RVS       F DLDR  H   SP  S    +N     L GW+ +  E+   L RA+   
Sbjct: 87  RVS------SFPDLDRYEH--GSPFRSLGQPTN-GKLDLEGWSMMQAEENCHLQRASPFR 146

Query: 126 ---TMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRV 185
               + W   P  P+   VK+++RL++PVD YP++NFVGR+LGPRGNSLKRVE+ T CRV
Sbjct: 147 GPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRV 206

Query: 186 YIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKP 245
           +IRG+GSVKD  KEEKL+G+PGYEHL EPLH+LIEA+LP +I++ RL  A   +E LLKP
Sbjct: 207 FIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKP 266

Query: 246 VDESQDYIKRQQLRELAMLNSSFREDSP 268
           +DES D+ KR+QL+ELA LN + RE+SP
Sbjct: 267 MDESMDHYKREQLKELAALNGTLREESP 274

[Close]

BLAST of Carg19534 vs. Swiss-Prot
Match: sp|Q8GYR4|QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.2e-123
Identity = 227/290 (78.28%), Postives = 250/290 (86.21%), Query Frame = 0


Query: 1   MSGMYG-TNFSPARTASPHIRT-TPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQAS 60
           MSG+Y   NFSP+R ASP IRT + D DSQY+S+LLAEHQK GPFMQVLPICSRLLNQ  
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQ-- 60

Query: 61  SLNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSR 120
               EI R++GMM NQGF D DRLRHRSPSPMAS NL+SNVS  GL GWNGLP E R+  
Sbjct: 61  ----EIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGG 120

Query: 121 ATGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCR 180
             GM M+WQ APASPSS  VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVE TTGCR
Sbjct: 121 PHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR 180

Query: 181 VYIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLK 240
           VYIRGKGS+KDP+KEEKL+G+PGYEHLNE LHILIEADLP +IVDI+LRQAQEIIEEL+K
Sbjct: 181 VYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVK 240

Query: 241 PVDESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           PVDESQDYIKRQQLRELA+LNS+ RE+SPGP GSVSPFNS+ MKR KTGR
Sbjct: 241 PVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of Carg19534 vs. Swiss-Prot
Match: sp|Q9ZVI3|QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.5e-123
Identity = 238/293 (81.23%), Postives = 255/293 (87.03%), Query Frame = 0


Query: 1   MSGMYGTN--FSPARTASPHIRTTPDGD-SQYLSELLAEHQKFGPFMQVLPICSRLLNQA 60
           MSG+Y  +  FSPAR ASP IR+TP+ D SQYL+ELLAEHQK  PFMQVLPICSRLLNQ 
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQ- 60

Query: 61  SSLNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLS 120
                E+ RVSGMMSNQGF D DRLRHRSPSPMASSNL+SNVS TGL GWNGL QE RLS
Sbjct: 61  -----EMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLS 120

Query: 121 RATGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGC 180
              GMTMDWQ AP SPSS TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVE TTGC
Sbjct: 121 GTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGC 180

Query: 181 RVYIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELL 240
           RV+IRGKGS+KDP+KE+KLRGRPGYEHLNE LHILIEADLPA+IV+IRLRQAQEIIEELL
Sbjct: 181 RVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELL 240

Query: 241 KPVDESQDYIKRQQLRELAMLNS-SFREDSPGP--GGSVSPFNSSGMKRAKTG 288
           KPVDESQD+IKRQQLRELA+LNS + RE+SPGP  GGSVSPFNSSG KR KTG
Sbjct: 241 KPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of Carg19534 vs. Swiss-Prot
Match: sp|Q75GR5|SPIN1_ORYSJ (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.3e-110
Identity = 206/289 (71.28%), Postives = 237/289 (82.01%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTP-DGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASS 60
           MSG+Y   FSPAR  SP IR+ P D DSQYL+ELLAEHQK GPFMQVLPICS+LL+Q   
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQ--- 60

Query: 61  LNAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRA 120
              EI+RVS ++ N GF D DR R RSPSPM+S N  SN S  G S WNGL QE RL   
Sbjct: 61  ---EIMRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQE-RLGFP 120

Query: 121 TGMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRV 180
            G +MDWQ AP SPSS  VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVE +TGCRV
Sbjct: 121 QGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRV 180

Query: 181 YIRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKP 240
           +IRGKGS+KDP KE+KLRG+PGYEHL++PLHILIEA+ PA+I+D RLR AQE+IEELLKP
Sbjct: 181 FIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKP 240

Query: 241 VDESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           VDESQD+ KRQQLRELAMLNS+ REDSP P GSVSPF++ GMKRAKTG+
Sbjct: 241 VDESQDFYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of Carg19534 vs. Swiss-Prot
Match: sp|Q0WLR1|QKIL1_ARATH (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-73
Identity = 150/280 (53.57%), Postives = 194/280 (69.29%), Query Frame = 0


Query: 8   NFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEILRV 67
           NFS    + P      +   +YLSELLAE  K  PF+ VLP   RL+NQ      EILRV
Sbjct: 43  NFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQ------EILRV 102

Query: 68  SGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGW-NGLPQEQRLSRATGMTMDW 127
           + ++ N     L + R   PSP+AS  +  N S   ++GW +  P E+ +S  +    +W
Sbjct: 103 TTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVS--SSPAPNW 162

Query: 128 QSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGS 187
            ++P S S L VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVE +T CRV IRG+GS
Sbjct: 163 LNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGS 222

Query: 188 VKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDY 247
           +KDP KE+ +RG+PGYEHLNEPLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+ D+
Sbjct: 223 IKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDF 282

Query: 248 IKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKT 287
            K+QQLRELA+LN S RE+     GS+SP+NS GMKRAKT
Sbjct: 283 YKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of Carg19534 vs. Swiss-Prot
Match: sp|Q9FKT4|QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-72
Identity = 146/260 (56.15%), Postives = 185/260 (71.15%), Query Frame = 0


Query: 28  QYLSELLAEHQKFGPFMQVLPICSRLLNQASSLNAEILRVSGMMSNQGFCDLDRLRHRSP 87
           +YLSELLAE  K  PF+ VLP   RLLNQ      EILRV+ ++ N        L H  P
Sbjct: 64  KYLSELLAERHKLTPFLPVLPHAFRLLNQ------EILRVTTLLENATVLSQSGLDH--P 123

Query: 88  SPMASSNLISNVSTTGLSGW-NGLPQEQRLSRATGMTMDWQSAPASPSSLTVKRILRLEI 147
           SP+AS  +  N +   ++GW +  P E+ +  + G   +W ++P S S L  KR +R++I
Sbjct: 124 SPLASGGIFQN-ARADMNGWASQFPSERSVPSSPG--PNWLNSPGSSSGLIAKRTIRVDI 183

Query: 148 PVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVYIRGKGSVKDPDKEEKLRGRPGYEHLN 207
           PVD YPNFNFVGRLLGPRGNSLKRVE +T CRV IRG+GS+KDP KEE +RG+PGYEHLN
Sbjct: 184 PVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLN 243

Query: 208 EPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSSFREDS 267
           EPLHIL+EA+LP  IVD RL QA+EI+++LL P++E+ D  K+QQLRELA+LN + RE+ 
Sbjct: 244 EPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEG 303

Query: 268 PGPGGSVSPFNSSGMKRAKT 287
               GSVSP+NS GMKRAKT
Sbjct: 304 SPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of Carg19534 vs. TrEMBL
Match: tr|A0A1S3CIV3|A0A1S3CIV3_CUCME (KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 3.0e-148
Identity = 271/288 (94.10%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMY TNFSPARTASPHIRTTPD DSQYLSELLAEHQKFGPFMQVLPIC RLLNQ    
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNL+SNVS+TGLSGWNGLPQE RLSRA 
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMSNVSSTGLSGWNGLPQE-RLSRAP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DES DYIKRQQLRELAMLNSSFRE+SPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Carg19534 vs. TrEMBL
Match: tr|A0A0A0KXW7|A0A0A0KXW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337270 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 6.6e-148
Identity = 270/288 (93.75%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSGMY TNFSPARTASPHIRTTPD DSQYLSELLAEHQKFGPFMQVLPIC RLLNQ    
Sbjct: 1   MSGMYSTNFSPARTASPHIRTTPDVDSQYLSELLAEHQKFGPFMQVLPICGRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNL++NVS+TGLSGWNGLPQE RLSRA 
Sbjct: 61  --EILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLMTNVSSTGLSGWNGLPQE-RLSRAP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DES DYIKRQQLRELAMLNSSFRE+SPGPGGSVSPFNSSGMKRAKTGR
Sbjct: 241 DESHDYIKRQQLRELAMLNSSFREESPGPGGSVSPFNSSGMKRAKTGR 281

[Close]

BLAST of Carg19534 vs. TrEMBL
Match: tr|I1L6X0|I1L6X0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100797384 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 3.6e-138
Identity = 253/288 (87.85%), Postives = 263/288 (91.32%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSG+Y  NFSPAR ASP IR+ P+ DSQYLSELLAEHQK GPFMQVLPICSRLLNQ    
Sbjct: 1   MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGM+SNQGF D DRLRHRSPSPMASSNL+SNVS TGL GWN L QEQRL  A 
Sbjct: 61  --EILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQEQRLCGAP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQSAPASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVY
Sbjct: 121 GMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELA+LNS+FRE+SPGP GSVSPFNSSGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

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BLAST of Carg19534 vs. TrEMBL
Match: tr|A0A2P5B9Y0|A0A2P5B9Y0_9ROSA (Polyribonucleotide nucleotidyltransferase OS=Trema orientalis OX=63057 GN=TorRG33x02_328370 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 6.2e-138
Identity = 255/288 (88.54%), Postives = 264/288 (91.67%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSG+Y  NFSPAR ASP IR+TPD DSQYLSELLAEHQK GPFMQVLPICSRLLNQ    
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGF D DRLRHRSPSPMASSNL+SNV+ +GL GWNGLPQE RLS   
Sbjct: 61  --EILRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVTGSGLGGWNGLPQE-RLSGPP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQ APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVY
Sbjct: 121 GMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQDYIKRQQLRELAMLNS+FRE+SPGP GSVSPFN+SGMKRAKTGR
Sbjct: 241 DESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTGR 281

[Close]

BLAST of Carg19534 vs. TrEMBL
Match: tr|A0A2P4NBC8|A0A2P4NBC8_QUESU (Kh domain-containing protein OS=Quercus suber OX=58331 GN=CFP56_40761 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.8e-137
Identity = 253/288 (87.85%), Postives = 263/288 (91.32%), Query Frame = 0


Query: 1   MSGMYGTNFSPARTASPHIRTTPDGDSQYLSELLAEHQKFGPFMQVLPICSRLLNQASSL 60
           MSG+Y  NFSPAR ASP IR+ PD DSQYLSELLAEHQK GPFMQVLPICSRLLNQ    
Sbjct: 1   MSGLYNPNFSPARAASPQIRSNPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQ---- 60

Query: 61  NAEILRVSGMMSNQGFCDLDRLRHRSPSPMASSNLISNVSTTGLSGWNGLPQEQRLSRAT 120
             EILRVSGMMSNQGF D DRLRHRSPSPMASSNLIS+V+ TGL GWNGLPQE RLS   
Sbjct: 61  --EILRVSGMMSNQGFSDFDRLRHRSPSPMASSNLISSVTGTGLGGWNGLPQE-RLSGPP 120

Query: 121 GMTMDWQSAPASPSSLTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVTTGCRVY 180
           GMTMDWQ APASPSS TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVE TTGCRVY
Sbjct: 121 GMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 180

Query: 181 IRGKGSVKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 240
           IRGKGS+KDPDKEEKLRGRPGYEHLNEPLHILIEADLPAN+VDIRLRQAQEIIEELLKPV
Sbjct: 181 IRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPV 240

Query: 241 DESQDYIKRQQLRELAMLNSSFREDSPGPGGSVSPFNSSGMKRAKTGR 289
           DESQD+IKRQQLRELAMLNS+FRE+SPGP GS+SPFNSSGMKRAKTGR
Sbjct: 241 DESQDFIKRQQLRELAMLNSNFREESPGPSGSISPFNSSGMKRAKTGR 281

The following BLAST results are available for this feature:

BLAST of Carg19534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950933.1	4.9e-155	97.92	KH domain-containing protein At2g38610-like isoform X1 [Cucurbita moschata] >XP_...	[more]
XP_022978251.1	1.4e-154	97.57	KH domain-containing protein At2g38610-like isoform X1 [Cucurbita maxima]	[more]
XP_022950934.1	4.6e-153	97.57	KH domain-containing protein At2g38610-like isoform X2 [Cucurbita moschata] >XP_...	[more]
XP_022978253.1	1.3e-152	97.22	KH domain-containing protein At2g38610-like isoform X2 [Cucurbita maxima]	[more]
XP_011653733.1	1.1e-149	94.10	PREDICTED: KH domain-containing protein At2g38610-like isoform X1 [Cucumis sativ...	[more]

BLAST of Carg19534 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08620.1	6.5e-125	78.28	RNA-binding KH domain-containing protein	[more]
AT2G38610.1	8.5e-125	81.23	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	1.8e-74	53.57	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	1.2e-73	56.15	RNA-binding KH domain-containing protein	[more]
AT1G09660.1	1.9e-63	50.75	RNA-binding KH domain-containing protein	[more]

BLAST of Carg19534 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYR4\|QKIL4_ARATH	1.2e-123	78.28	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
sp\|Q9ZVI3\|QKIL3_ARATH	1.5e-123	81.23	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
sp\|Q75GR5\|SPIN1_ORYSJ	3.3e-110	71.28	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
sp\|Q0WLR1\|QKIL1_ARATH	3.2e-73	53.57	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
sp\|Q9FKT4\|QKIL2_ARATH	2.1e-72	56.15	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of Carg19534 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIV3\|A0A1S3CIV3_CUCME	3.0e-148	94.10	KH domain-containing protein At2g38610 OS=Cucumis melo OX=3656 GN=LOC103501485 P...	[more]
tr\|A0A0A0KXW7\|A0A0A0KXW7_CUCSA	6.6e-148	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337270 PE=4 SV=1	[more]
tr\|I1L6X0\|I1L6X0_SOYBN	3.6e-138	87.85	Uncharacterized protein OS=Glycine max OX=3847 GN=100797384 PE=4 SV=1	[more]
tr\|A0A2P5B9Y0\|A0A2P5B9Y0_9ROSA	6.2e-138	88.54	Polyribonucleotide nucleotidyltransferase OS=Trema orientalis OX=63057 GN=TorRG3...	[more]
tr\|A0A2P4NBC8\|A0A2P4NBC8_QUESU	1.8e-137	87.85	Kh domain-containing protein OS=Quercus suber OX=58331 GN=CFP56_40761 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR032377	STAR_dimer
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19534-RA	Carg19534-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 138..238 e-value: 1.0E-5 score: 35.0
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 150..188 e-value: 9.9E-5 score: 22.0
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 23..76 e-value: 3.4E-9 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..288
None	No IPR available	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 1..288
None	No IPR available	PANTHER	PTHR11208:SF42	SUBFAMILY NOT NAMED	coord: 1..288
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 143..263 e-value: 1.43323E-53 score: 171.658
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 145..261

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19534	Cla012050	Watermelon (97103) v1	carwmB0626
Carg19534	Csa4G337270	Cucumber (Chinese Long) v2	carcuB0650
Carg19534	MELO3C025257	Melon (DHL92) v3.5.1	carmeB0627
Carg19534	ClCG04G006180	Watermelon (Charleston Gray)	carwcgB0609
Carg19534	CSPI04G16780	Wild cucumber (PI 183967)	carcpiB0660
Carg19534	Cucsa.130740	Cucumber (Gy14) v1	carcgyB0702
Carg19534	CmaCh07G012020	Cucurbita maxima (Rimu)	carcmaB0888
Carg19534	CmaCh03G002770	Cucurbita maxima (Rimu)	carcmaB0887
Carg19534	CmoCh07G012450	Cucurbita moschata (Rifu)	carcmoB0864
Carg19534	CmoCh03G002890	Cucurbita moschata (Rifu)	carcmoB0862
Carg19534	Lsi01G016340	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19534	Cp4.1LG10g07270	Cucurbita pepo (Zucchini)	carcpeB0891
Carg19534	Cp4.1LG19g01730	Cucurbita pepo (Zucchini)	carcpeB0893
Carg19534	CsGy4G016100	Cucumber (Gy14) v2	carcgybB0626
Carg19534	MELO3C025257.2	Melon (DHL92) v3.6.1	carmedB0635
Carg19534	CsaV3_4G027380	Cucumber (Chinese Long) v3	carcucB0661
Carg19534	Cla97C04G072730	Watermelon (97103) v2	carwmbB0654
Carg19534	Bhi03G001786	Wax gourd	carwgoB0747

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19534	Carg12637	Silver-seed gourd	carcarB319

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19534	Silver-seed gourd	carcarB024
Carg19534	Cucurbita moschata (Rifu)	carcmoB0863
Carg19534	Cucurbita pepo (Zucchini)	carcpeB0892