Cp4.1LG19g01480 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g01480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor bHLH61-like protein
LocationCp4.1LG19 : 1130589 .. 1131230 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAAGAAAGCAAAAACCTCTGGTGGCGCGTGGCCGGCGAGTGGAGGAGACACGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAACATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTACTTTTCTCATAACTCAGCTTTTACCTTTGAATTTCATGCTTTTTTACTCGAGATTTTCAACTATTTTTCCGGAGCGCCACGCTCGGTTGTACCTATCGGCGAATTGACTCTGTCGAACGTGCAGGTGGTGAATGTCGAGAGTTTAGCGAGAGGATTCCTCATAAGCGTATATTTGGAAAAGAATTCGCCCGGATTGTTAATTCGGATTCTAGAAGCCTTCGAAAAATTGGGACTCGAAGTCCTCGATGCTAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGGTTCGAGTTCCATATCATAAGCTCACTAACACGAACATAACCCAACAATTAAAACTTCAAATTCGCTTTTTTTTGTTGTGCAGAATGAAGACACAAAAATCGTAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGCGCAGACATGA

mRNA sequence

AGAAAGAAAGCAAAAACCTCTGGTGGCGCGTGGCCGGCGAGTGGAGGAGACACGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAACATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTGGTGAATGTCGAGAGTTTAGCGAGAGGATTCCTCATAAGCGTATATTTGGAAAAGAATTCGCCCGGATTGTTAATTCGGATTCTAGAAGCCTTCGAAAAATTGGGACTCGAAGTCCTCGATGCTAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGAATGAAGACACAAAAATCGTAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGCGCAGACATGA

Coding sequence (CDS)

AGAAAGAAAGCAAAAACCTCTGGTGGCGCGTGGCCGGCGAGTGGAGGAGACACGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAACATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTGGTGAATGTCGAGAGTTTAGCGAGAGGATTCCTCATAAGCGTATATTTGGAAAAGAATTCGCCCGGATTGTTAATTCGGATTCTAGAAGCCTTCGAAAAATTGGGACTCGAAGTCCTCGATGCTAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGAATGAAGACACAAAAATCGTAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGCGCAGACATGA

Protein sequence

RKKAKTSGGAWPASGGDTADGGSEMGSRERKKAATSSSMNHEKPTEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESNAQT
BLAST of Cp4.1LG19g01480 vs. TrEMBL
Match: A0A0A0L039_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329560 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 90/120 (75.00%), Postives = 104/120 (86.67%), Query Frame = 1

Query: 25  MGSRERKKAATSS-SMNHEKPTEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRI 84
           MGSRERKKAA ++ + +H    EF ASTSS+AVVNVES+ RGFLI+V+LE+NSPGLL+RI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 85  LEAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESNAQT 144
           LEAFEKLGL VLDA++SCSDCFQLQA GEENE  KI+K QVVK AVKQAIKEWSES+ QT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

BLAST of Cp4.1LG19g01480 vs. TrEMBL
Match: D7SR22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00960 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1

Query: 45  TEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDC 104
           ++F A  +   VV VE+L RGFLI+V+ E+N PGLL+ ILE FE+LGL VLDA VSCSD 
Sbjct: 57  SQFSADQNPLPVVKVETLERGFLINVFSERNCPGLLVSILETFEELGLNVLDARVSCSDS 116

Query: 105 FQLQAVGEENEDTK-IVKPQVVKKAVKQAIKEWSESNAQ 143
           F L+AVG ENE  +  +  QVVK+AV QAIK WSES+ Q
Sbjct: 117 FHLEAVGGENEGQQDSIDAQVVKQAVLQAIKNWSESSEQ 155

BLAST of Cp4.1LG19g01480 vs. TrEMBL
Match: A0A0D2S8L1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G006200 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 57/108 (52.78%), Postives = 80/108 (74.07%), Query Frame = 1

Query: 39  MNHEKPTEFDASTSSS---AVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVL 98
           M+ E  T   ASTSS     +V VE+L +GFLI+V+LEKN PGLL+ ILE FE+LGL+VL
Sbjct: 55  MSQETATSSHASTSSQNPLPMVTVETLEKGFLINVFLEKNCPGLLVSILETFEELGLDVL 114

Query: 99  DANVSCSDCFQLQAVGEENE-DTKIVKPQVVKKAVKQAIKEWSESNAQ 143
           +A VSC + F+L+A+G ENE + + +  Q+VK+AV QAI++W E++ Q
Sbjct: 115 EARVSCEESFKLEAIGGENEGNVECIDAQMVKQAVMQAIRKWGENSHQ 162

BLAST of Cp4.1LG19g01480 vs. TrEMBL
Match: M5WE19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017010mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1

Query: 54  SAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDCFQLQAVGEE 113
           S  V VE+L RGFLI+V  +KNSPGLL+ ILEAFE+LGL+VLDA VSCSD FQL+AVG E
Sbjct: 63  SPAVTVETLERGFLINVLSDKNSPGLLVSILEAFEELGLDVLDARVSCSDTFQLEAVGGE 122

Query: 114 NE-DTKIVKPQVVKKAVKQAIKEWSESNAQ 143
           N+     +   VVK+AV QAI+ WS+S+ Q
Sbjct: 123 NQGQADSIDAHVVKQAVLQAIQNWSQSSEQ 152

BLAST of Cp4.1LG19g01480 vs. TrEMBL
Match: A0A0B0MKH5_GOSAR (Transcription factor bHLH61-like protein OS=Gossypium arboreum GN=F383_25075 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 56  VVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDCFQLQAVGEENE 115
           +V VE+L +GFLI+V+ EKN PGLL+ +LEAFE+LGL +L+A VSC+D F+LQAVG ENE
Sbjct: 68  MVTVETLEKGFLINVFSEKNCPGLLVSLLEAFEELGLNILEARVSCTDSFRLQAVGGENE 127

Query: 116 D-TKIVKPQVVKKAVKQAIKEWSESNAQ 143
           + ++ +  QVVK+AV QAIK WSE   Q
Sbjct: 128 EQSESINAQVVKQAVLQAIKNWSEGTDQ 155

BLAST of Cp4.1LG19g01480 vs. TAIR10
Match: AT2G40435.1 (AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1))

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-18
Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 1

Query: 29  ERKKAATSSSMNHEKPTEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFE 88
           ER     ++  +  +PT+       + +V VE+L +GF+I+V+  KN PG+L+ +LEAFE
Sbjct: 48  ERFNQDPTAEQSSSEPTD-----PKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFE 107

Query: 89  KLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESN 141
            +GL VL+A  SC+D F L A+G ENED + +  + VK+AV  AI+ W E N
Sbjct: 108 DIGLNVLEARASCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAIRSWGEIN 154

BLAST of Cp4.1LG19g01480 vs. TAIR10
Match: AT3G56220.1 (AT3G56220.1 transcription regulators)

HSP 1 Score: 85.1 bits (209), Expect = 3.8e-17
Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 1

Query: 47  FDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDCFQ 106
           F  S+  + +V VE+L +GF+I V   KN  G+L+ +LE FE LGL+V++A VSC+D F 
Sbjct: 61  FRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTFS 120

Query: 107 LQAVG-EENEDTKIVKPQVVKKAVKQAIKEWSESNA 142
           L A+G   N+D   +  + VK+AV +AI+ WS+S+A
Sbjct: 121 LHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDSHA 156

BLAST of Cp4.1LG19g01480 vs. NCBI nr
Match: gi|659128550|ref|XP_008464258.1| (PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 3.0e-40
Identity = 91/118 (77.12%), Postives = 104/118 (88.14%), Query Frame = 1

Query: 25  MGSRERKKAATSSSMNHEKPTEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRIL 84
           MGSRERKKAA +++ +H    EF ASTSSSAVVNVES+ RGFLI+V+LE+NSPGLL+RIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 85  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESNAQ 143
           EAFEKLGL VLDA++SCSDCFQLQAVGEENE  KI+K QVVK AVKQAIKEWSES+ Q
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118

BLAST of Cp4.1LG19g01480 vs. NCBI nr
Match: gi|449464418|ref|XP_004149926.1| (PREDICTED: uncharacterized protein LOC101209807 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 90/120 (75.00%), Postives = 104/120 (86.67%), Query Frame = 1

Query: 25  MGSRERKKAATSS-SMNHEKPTEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRI 84
           MGSRERKKAA ++ + +H    EF ASTSS+AVVNVES+ RGFLI+V+LE+NSPGLL+RI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 85  LEAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESNAQT 144
           LEAFEKLGL VLDA++SCSDCFQLQA GEENE  KI+K QVVK AVKQAIKEWSES+ QT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

BLAST of Cp4.1LG19g01480 vs. NCBI nr
Match: gi|359481316|ref|XP_002268100.2| (PREDICTED: uncharacterized protein LOC100241403 isoform X2 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1

Query: 45  TEFDASTSSSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDC 104
           ++F A  +   VV VE+L RGFLI+V+ E+N PGLL+ ILE FE+LGL VLDA VSCSD 
Sbjct: 57  SQFSADQNPLPVVKVETLERGFLINVFSERNCPGLLVSILETFEELGLNVLDARVSCSDS 116

Query: 105 FQLQAVGEENEDTK-IVKPQVVKKAVKQAIKEWSESNAQ 143
           F L+AVG ENE  +  +  QVVK+AV QAIK WSES+ Q
Sbjct: 117 FHLEAVGGENEGQQDSIDAQVVKQAVLQAIKNWSESSEQ 155

BLAST of Cp4.1LG19g01480 vs. NCBI nr
Match: gi|645221499|ref|XP_008245174.1| (PREDICTED: transcription factor bHLH61-like isoform X1 [Prunus mume])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 1

Query: 53  SSAVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVLDANVSCSDCFQLQAVGE 112
           S A V VE+L RGFLI+V  +KNSPGLL+ ILEAFE+LGL+VLDA VSCSD FQL+AVG 
Sbjct: 63  SPAQVTVETLERGFLINVLSDKNSPGLLVSILEAFEELGLDVLDARVSCSDTFQLEAVGG 122

Query: 113 ENE-DTKIVKPQVVKKAVKQAIKEWSESNAQ 143
           EN+     +   VVK+AV QAI+ WS+S+ Q
Sbjct: 123 ENQGQADSIDAHVVKQAVLQAIQNWSQSSEQ 153

BLAST of Cp4.1LG19g01480 vs. NCBI nr
Match: gi|823162412|ref|XP_012481156.1| (PREDICTED: transcription factor SCREAM2-like [Gossypium raimondii])

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 57/108 (52.78%), Postives = 80/108 (74.07%), Query Frame = 1

Query: 39  MNHEKPTEFDASTSSS---AVVNVESLARGFLISVYLEKNSPGLLIRILEAFEKLGLEVL 98
           M+ E  T   ASTSS     +V VE+L +GFLI+V+LEKN PGLL+ ILE FE+LGL+VL
Sbjct: 55  MSQETATSSHASTSSQNPLPMVTVETLEKGFLINVFLEKNCPGLLVSILETFEELGLDVL 114

Query: 99  DANVSCSDCFQLQAVGEENE-DTKIVKPQVVKKAVKQAIKEWSESNAQ 143
           +A VSC + F+L+A+G ENE + + +  Q+VK+AV QAI++W E++ Q
Sbjct: 115 EARVSCEESFKLEAIGGENEGNVECIDAQMVKQAVMQAIRKWGENSHQ 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L039_CUCSA1.1e-3875.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329560 PE=4 SV=1[more]
D7SR22_VITVI1.8e-2059.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00960 PE=4 SV=... [more]
A0A0D2S8L1_GOSRA1.6e-1952.78Uncharacterized protein OS=Gossypium raimondii GN=B456_005G006200 PE=4 SV=1[more]
M5WE19_PRUPE2.0e-1962.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017010mg PE=4 SV=1[more]
A0A0B0MKH5_GOSAR2.7e-1960.23Transcription factor bHLH61-like protein OS=Gossypium arboreum GN=F383_25075 PE=... [more]
Match NameE-valueIdentityDescription
AT2G40435.17.6e-1841.96 BEST Arabidopsis thaliana protein match is: transcription regulators... [more]
AT3G56220.13.8e-1744.79 transcription regulators[more]
Match NameE-valueIdentityDescription
gi|659128550|ref|XP_008464258.1|3.0e-4077.12PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo][more]
gi|449464418|ref|XP_004149926.1|1.6e-3875.00PREDICTED: uncharacterized protein LOC101209807 [Cucumis sativus][more]
gi|359481316|ref|XP_002268100.2|2.6e-2059.60PREDICTED: uncharacterized protein LOC100241403 isoform X2 [Vitis vinifera][more]
gi|645221499|ref|XP_008245174.1|2.2e-1962.64PREDICTED: transcription factor bHLH61-like isoform X1 [Prunus mume][more]
gi|823162412|ref|XP_012481156.1|2.2e-1952.78PREDICTED: transcription factor SCREAM2-like [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016597amino acid binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002912ACT_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016597 amino acid binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005488 binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g01480.1Cp4.1LG19g01480.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002912ACT domainPROFILEPS51671ACTcoord: 68..143
score: 8
NoneNo IPR availablePANTHERPTHR31945FAMILY NOT NAMEDcoord: 57..140
score: 1.4
NoneNo IPR availablePANTHERPTHR31945:SF21SUBFAMILY NOT NAMEDcoord: 57..140
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g01480Cp4.1LG10g07670Cucurbita pepo (Zucchini)cpecpeB077
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g01480Cucumber (Chinese Long) v3cpecucB0597
Cp4.1LG19g01480Wax gourdcpewgoB0586
Cp4.1LG19g01480Wild cucumber (PI 183967)cpecpiB486
Cp4.1LG19g01480Cucumber (Chinese Long) v2cpecuB485
Cp4.1LG19g01480Bottle gourd (USVL1VR-Ls)cpelsiB403
Cp4.1LG19g01480Watermelon (Charleston Gray)cpewcgB421
Cp4.1LG19g01480Watermelon (97103) v1cpewmB473
Cp4.1LG19g01480Watermelon (97103) v1cpewmB491
Cp4.1LG19g01480Melon (DHL92) v3.5.1cpemeB441
Cp4.1LG19g01480Cucumber (Gy14) v2cgybcpeB377
Cp4.1LG19g01480Melon (DHL92) v3.6.1cpemedB524