CmoCh07G012790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G012790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription factor bHLH61-like protein
Location	Cmo_Chr07 : 7033518 .. 7034106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTACTTTTCTCTTAACTCACTTTTCCCTTTGAATTTCATGCTTTTTTACTCGAGATTTTCAACTATTTTTCCCGAGCGCCACGTTCGGTTGTACCTATCGGTGAATTGACTCTACAAACGTGCAGGTGGTGAATGTCGAGAGTTTAGTGAGAGGATTTCTCATAAACGTATATTTAGAAAAGAATTCGCCTGGATTGTTAGTTCGGATTCTACAAGCCTTCGAGAAATTGGGACTCGAAGTCCTCGATGCCAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGGTTCGAGTTCCGTATCTTAAGCTTGCTGACATGAACATAACCCAACGATTAAAACTTCAAATTCGCTTTGTTTTGTTGTGCAGAATGAAGATACAAAAATCGTAAAGCCCCGAGTGGTGAAAAGAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAACGGGCAGACATGA

mRNA sequence

ATGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTGGTGAATGTCGAGAGTTTAGTGAGAGGATTTCTCATAAACGTATATTTAGAAAAGAATTCGCCTGGATTGTTAGTTCGGATTCTACAAGCCTTCGAGAAATTGGGACTCGAAGTCCTCGATGCCAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGAATGAAGATACAAAAATCGTAAAGCCCCGAGTGGTGAAAAGAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAACGGGCAGACATGA

Coding sequence (CDS)

ATGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTGGTGAATGTCGAGAGTTTAGTGAGAGGATTTCTCATAAACGTATATTTAGAAAAGAATTCGCCTGGATTGTTAGTTCGGATTCTACAAGCCTTCGAGAAATTGGGACTCGAAGTCCTCGATGCCAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGAATGAAGATACAAAAATCGTAAAGCCCCGAGTGGTGAAAAGAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAACGGGCAGACATGA

Homology

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BLAST of CmoCh07G012790 vs. TrEMBL
Match: A0A0A0L039_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329560 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-40
Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 8   MGSRERKKAAASS-SMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRI 67
           MGSRERKKAAA++ + +H    EF ASTSS+AVVNVES+ RGFLINV+LE+NSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 68  LQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRAVKQAIKEWSESNGQT 127
           L+AFEKLGL VLDA++SCSDCFQLQA GEENE  KI+K +VVK AVKQAIKEWSES+GQT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

[Close]

BLAST of CmoCh07G012790 vs. TrEMBL
Match: D7SR22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00960 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-21
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 28  TEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDC 87
           ++F A  +   VV VE+L RGFLINV+ E+N PGLLV IL+ FE+LGL VLDA VSCSD 
Sbjct: 57  SQFSADQNPLPVVKVETLERGFLINVFSERNCPGLLVSILETFEELGLNVLDARVSCSDS 116

Query: 88  FQLQAVGEENEDTK-IVKPRVVKRAVKQAIKEWSESNGQ 126
           F L+AVG ENE  +  +  +VVK+AV QAIK WSES+ Q
Sbjct: 117 FHLEAVGGENEGQQDSIDAQVVKQAVLQAIKNWSESSEQ 155

[Close]

BLAST of CmoCh07G012790 vs. TrEMBL
Match: A0A061EDZ5_THECC (Transcription factor bHLH61 isoform 1 OS=Theobroma cacao GN=TCM_017056 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-20
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1


Query: 11  RERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAF 70
           R  +  AA+ + NH+ P           VV VE+L +GFLINV  EK+ PGLLV IL+AF
Sbjct: 49  RLNEDIAAAQTSNHQNPLP---------VVTVETLEKGFLINVLSEKSCPGLLVSILEAF 108

Query: 71  EKLGLEVLDANVSCSDCFQLQAVGEENED-TKIVKPRVVKRAVKQAIKEWSESNGQ 126
           E+LGL VL+A VSC+D F+LQAVG ENE+ ++ +  +VVK+AV QAIK WSES  Q
Sbjct: 109 EELGLNVLEARVSCTDSFRLQAVGGENEEQSETIDAQVVKQAVLQAIKNWSESTDQ 155

[Close]

BLAST of CmoCh07G012790 vs. TrEMBL
Match: M5WE19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017010mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-20
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 37  SAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEE 96
           S  V VE+L RGFLINV  +KNSPGLLV IL+AFE+LGL+VLDA VSCSD FQL+AVG E
Sbjct: 63  SPAVTVETLERGFLINVLSDKNSPGLLVSILEAFEELGLDVLDARVSCSDTFQLEAVGGE 122

Query: 97  NE-DTKIVKPRVVKRAVKQAIKEWSESNGQ 126
           N+     +   VVK+AV QAI+ WS+S+ Q
Sbjct: 123 NQGQADSIDAHVVKQAVLQAIQNWSQSSEQ 152

[Close]

BLAST of CmoCh07G012790 vs. TrEMBL
Match: A0A0D2S8L1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G006200 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-20
Identity = 57/108 (52.78%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 22  MNHEKPTEFDASTSSS---AVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVL 81
           M+ E  T   ASTSS     +V VE+L +GFLINV+LEKN PGLLV IL+ FE+LGL+VL
Sbjct: 55  MSQETATSSHASTSSQNPLPMVTVETLEKGFLINVFLEKNCPGLLVSILETFEELGLDVL 114

Query: 82  DANVSCSDCFQLQAVGEENE-DTKIVKPRVVKRAVKQAIKEWSESNGQ 126
           +A VSC + F+L+A+G ENE + + +  ++VK+AV QAI++W E++ Q
Sbjct: 115 EARVSCEESFKLEAIGGENEGNVECIDAQMVKQAVMQAIRKWGENSHQ 162

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BLAST of CmoCh07G012790 vs. TAIR10
Match: AT2G40435.1 (AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1))

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-18
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 12  ERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFE 71
           ER     ++  +  +PT+       + +V VE+L +GF+INV+  KN PG+LV +L+AFE
Sbjct: 48  ERFNQDPTAEQSSSEPTD-----PKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFE 107

Query: 72  KLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRAVKQAIKEWSESN 124
            +GL VL+A  SC+D F L A+G ENED + +    VK+AV  AI+ W E N
Sbjct: 108 DIGLNVLEARASCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAIRSWGEIN 154

[Close]

BLAST of CmoCh07G012790 vs. TAIR10
Match: AT3G56220.1 (AT3G56220.1 transcription regulators)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1


Query: 30  FDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQ 89
           F  S+  + +V VE+L +GF+I V   KN  G+LV +L+ FE LGL+V++A VSC+D F 
Sbjct: 61  FRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTFS 120

Query: 90  LQAVG-EENEDTKIVKPRVVKRAVKQAIKEWSESN 124
           L A+G   N+D   +    VK+AV +AI+ WS+S+
Sbjct: 121 LHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDSH 155

[Close]

BLAST of CmoCh07G012790 vs. NCBI nr
Match: gi|659128550|ref|XP_008464258.1| (PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 8   MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL 67
           MGSRERKKAAA+++ +H    EF ASTSSSAVVNVES+ RGFLINV+LE+NSPGLLVRIL
Sbjct: 1   MGSRERKKAAAAANSSHHNSKEFRASTSSSAVVNVESVERGFLINVFLERNSPGLLVRIL 60

Query: 68  QAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRAVKQAIKEWSESNGQ 126
           +AFEKLGL VLDA++SCSDCFQLQAVGEENE  KI+K +VVK AVKQAIKEWSES+GQ
Sbjct: 61  EAFEKLGLGVLDADISCSDCFQLQAVGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQ 118

[Close]

BLAST of CmoCh07G012790 vs. NCBI nr
Match: gi|449464418|ref|XP_004149926.1| (PREDICTED: uncharacterized protein LOC101209807 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 5.9e-40
Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 8   MGSRERKKAAASS-SMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRI 67
           MGSRERKKAAA++ + +H    EF ASTSS+AVVNVES+ RGFLINV+LE+NSPGLLVRI
Sbjct: 1   MGSRERKKAAAAAPNSSHHNSKEFRASTSSTAVVNVESVERGFLINVFLERNSPGLLVRI 60

Query: 68  LQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRAVKQAIKEWSESNGQT 127
           L+AFEKLGL VLDA++SCSDCFQLQA GEENE  KI+K +VVK AVKQAIKEWSES+GQT
Sbjct: 61  LEAFEKLGLGVLDADISCSDCFQLQAFGEENEGRKIIKAQVVKNAVKQAIKEWSESDGQT 120

[Close]

BLAST of CmoCh07G012790 vs. NCBI nr
Match: gi|359481316|ref|XP_002268100.2| (PREDICTED: uncharacterized protein LOC100241403 isoform X2 [Vitis vinifera])

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1


Query: 28  TEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDC 87
           ++F A  +   VV VE+L RGFLINV+ E+N PGLLV IL+ FE+LGL VLDA VSCSD 
Sbjct: 57  SQFSADQNPLPVVKVETLERGFLINVFSERNCPGLLVSILETFEELGLNVLDARVSCSDS 116

Query: 88  FQLQAVGEENEDTK-IVKPRVVKRAVKQAIKEWSESNGQ 126
           F L+AVG ENE  +  +  +VVK+AV QAIK WSES+ Q
Sbjct: 117 FHLEAVGGENEGQQDSIDAQVVKQAVLQAIKNWSESSEQ 155

[Close]

BLAST of CmoCh07G012790 vs. NCBI nr
Match: gi|645221499|ref|XP_008245174.1| (PREDICTED: transcription factor bHLH61-like isoform X1 [Prunus mume])

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-20
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 36  SSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGE 95
           S A V VE+L RGFLINV  +KNSPGLLV IL+AFE+LGL+VLDA VSCSD FQL+AVG 
Sbjct: 63  SPAQVTVETLERGFLINVLSDKNSPGLLVSILEAFEELGLDVLDARVSCSDTFQLEAVGG 122

Query: 96  ENE-DTKIVKPRVVKRAVKQAIKEWSESNGQ 126
           EN+     +   VVK+AV QAI+ WS+S+ Q
Sbjct: 123 ENQGQADSIDAHVVKQAVLQAIQNWSQSSEQ 153

[Close]

BLAST of CmoCh07G012790 vs. NCBI nr
Match: gi|590646739|ref|XP_007031706.1| (Transcription factor bHLH61 isoform 1 [Theobroma cacao])

HSP 1 Score: 105.9 bits (263), Expect = 5.2e-20
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1


Query: 11  RERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAF 70
           R  +  AA+ + NH+ P           VV VE+L +GFLINV  EK+ PGLLV IL+AF
Sbjct: 49  RLNEDIAAAQTSNHQNPLP---------VVTVETLEKGFLINVLSEKSCPGLLVSILEAF 108

Query: 71  EKLGLEVLDANVSCSDCFQLQAVGEENED-TKIVKPRVVKRAVKQAIKEWSESNGQ 126
           E+LGL VL+A VSC+D F+LQAVG ENE+ ++ +  +VVK+AV QAIK WSES  Q
Sbjct: 109 EELGLNVLEARVSCTDSFRLQAVGGENEEQSETIDAQVVKQAVLQAIKNWSESTDQ 155

The following BLAST results are available for this feature:

BLAST of CmoCh07G012790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G012790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L039_CUCSA	4.1e-40	76.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329560 PE=4 SV=1	[more]
D7SR22_VITVI	7.3e-21	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00960 PE=4 SV=...	[more]
A0A061EDZ5_THECC	3.6e-20	53.45	Transcription factor bHLH61 isoform 1 OS=Theobroma cacao GN=TCM_017056 PE=4 SV=1	[more]
M5WE19_PRUPE	4.7e-20	63.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017010mg PE=4 SV=1	[more]
A0A0D2S8L1_GOSRA	6.2e-20	52.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G006200 PE=4 SV=1	[more]

BLAST of CmoCh07G012790 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40435.1	2.3e-18	42.86	BEST Arabidopsis thaliana protein match is: transcription regulators...	[more]
AT3G56220.1	1.3e-16	44.21	transcription regulators	[more]

BLAST of CmoCh07G012790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128550\|ref\|XP_008464258.1\|	1.1e-41	78.81	PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo]	[more]
gi\|449464418\|ref\|XP_004149926.1\|	5.9e-40	76.67	PREDICTED: uncharacterized protein LOC101209807 [Cucumis sativus]	[more]
gi\|359481316\|ref\|XP_002268100.2\|	1.0e-20	59.60	PREDICTED: uncharacterized protein LOC100241403 isoform X2 [Vitis vinifera]	[more]
gi\|645221499\|ref\|XP_008245174.1\|	4.0e-20	63.74	PREDICTED: transcription factor bHLH61-like isoform X1 [Prunus mume]	[more]
gi\|590646739\|ref\|XP_007031706.1\|	5.2e-20	53.45	Transcription factor bHLH61 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0005488	binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G012790.1	CmoCh07G012790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31945	FAMILY NOT NAMED	coord: 7..123 score: 4.7
None	No IPR available	PANTHER	PTHR31945:SF21	SUBFAMILY NOT NAMED	coord: 7..123 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G012790	Cucsa.130380	Cucumber (Gy14) v1	cgycmoB0352
CmoCh07G012790	CmaCh03G003070	Cucurbita maxima (Rimu)	cmacmoB668
CmoCh07G012790	CmaCh07G012340	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G012790	Csa4G329560	Cucumber (Chinese Long) v2	cmocuB854
CmoCh07G012790	MELO3C026050	Melon (DHL92) v3.5.1	cmomeB785
CmoCh07G012790	ClCG04G006520	Watermelon (Charleston Gray)	cmowcgB762
CmoCh07G012790	CSPI04G16400	Wild cucumber (PI 183967)	cmocpiB862
CmoCh07G012790	Lsi01G016000	Bottle gourd (USVL1VR-Ls)	cmolsiB779
CmoCh07G012790	Cp4.1LG19g01480	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G012790	Cp4.1LG10g07670	Cucurbita pepo (Zucchini)	cmocpeB807
CmoCh07G012790	MELO3C026050.2	Melon (DHL92) v3.6.1	cmomedB888
CmoCh07G012790	CsaV3_4G027000	Cucumber (Chinese Long) v3	cmocucB1004
CmoCh07G012790	Cla97C04G073120	Watermelon (97103) v2	cmowmbB860
CmoCh07G012790	Bhi03G001744	Wax gourd	cmowgoB1064
CmoCh07G012790	CsGy4G015710	Cucumber (Gy14) v2	cgybcmoB541
CmoCh07G012790	Carg19501	Silver-seed gourd	carcmoB0864
CmoCh07G012790	Carg12665	Silver-seed gourd	carcmoB0395
CmoCh07G012790	Carg05951	Silver-seed gourd	carcmoB0035

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G012790	CmoCh03G003200	Cucurbita moschata (Rifu)	cmocmoB456

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G012790	Watermelon (97103) v1	cmowmB817