Cp4.1LG19g00370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g00370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 3 subunit E
LocationCp4.1LG19 : 275180 .. 275598 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGTTTGTAGTAAGATTGCCTTCAGCCAGTTAGTAACAGATCTGATTCTAAATCCTCTCTTTTAGTGCTGCTAAATAATGAGGTTCTCTAATGTATAAAGCTTGGTTCTCAGGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

mRNA sequence

ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

Coding sequence (CDS)

ATGGGATGGGTGGGAGCAAAAGAGGAAGAAAGGAGGTTTTACTCTAAGATTTGGATTGGTAAAACAATACTTCCTGACCATTATTGTATATCTTCTGTCATTATAACTTGTGACTTTTCTTGGTTCATTTCGTTGTTATTATCTCAAGTGCTGGTAACTTGTGGCAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCGGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCAAAGCTTGATTCAAAGACAGGAACGGTTATAATGGAAACGAACGAGCCTGACGTGTAA

Protein sequence

MGWVGAKEEERRFYSKIWIGKTILPDHYCISSVIITCDFSWFISLLLSQVLVTCGSVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV
BLAST of Cp4.1LG19g00370 vs. Swiss-Prot
Match: EIF3E_ARATH (Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana GN=TIF3E1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DS++GTVIME  +P+V
Sbjct: 364 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSESGTVIMEPTQPNV 409

BLAST of Cp4.1LG19g00370 vs. Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           S+LAEKLN+  EEAERWIVNL+R +KLDAK+DSK G V+M    P V
Sbjct: 352 SMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGHVVMGVQAPSV 398

BLAST of Cp4.1LG19g00370 vs. Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

BLAST of Cp4.1LG19g00370 vs. Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

BLAST of Cp4.1LG19g00370 vs. Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-a PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETN 99
           S+LA+KLN+  EEAERWIVNL+R ++LDAK+DSK G V+M  N
Sbjct: 355 SMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNN 397

BLAST of Cp4.1LG19g00370 vs. TrEMBL
Match: A0A068V0W8_COFCA (Eukaryotic translation initiation factor 3 subunit E OS=Coffea canephora GN=GSCOC_T00040420001 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-14
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DSKTGTV+ME N+P+V
Sbjct: 306 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSKTGTVLMEPNQPNV 351

BLAST of Cp4.1LG19g00370 vs. TrEMBL
Match: A0A068VLU7_COFCA (Uncharacterized protein (Fragment) OS=Coffea canephora GN=GSCOC_T00012285001 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-14
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DSKTGTV+ME N+P+V
Sbjct: 306 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSKTGTVLMEPNQPNV 351

BLAST of Cp4.1LG19g00370 vs. TrEMBL
Match: A0A0A0L0F9_CUCSA (Eukaryotic translation initiation factor 3 subunit E OS=Cucumis sativus GN=Csa_4G343070 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           +VLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTV+ME  +P+V
Sbjct: 359 NVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVLMEPVQPNV 405

BLAST of Cp4.1LG19g00370 vs. TrEMBL
Match: A0A151U319_CAJCA (Eukaryotic translation initiation factor 3 subunit E OS=Cajanus cajan GN=KK1_006338 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.9e-13
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+R+SKLDAK+DS+TGTVIME N P+V
Sbjct: 360 VLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSQTGTVIMEPNHPNV 405

BLAST of Cp4.1LG19g00370 vs. TrEMBL
Match: A0A0B2S906_GLYSO (Eukaryotic translation initiation factor 3 subunit E OS=Glycine soja GN=glysoja_048265 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.9e-13
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+R+SKLDAK+DS+TGTVIME N P+V
Sbjct: 371 VLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSETGTVIMEPNHPNV 416

BLAST of Cp4.1LG19g00370 vs. TAIR10
Match: AT3G57290.1 (AT3G57290.1 eukaryotic translation initiation factor 3E)

HSP 1 Score: 80.1 bits (196), Expect = 8.7e-16
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DS++GTVIME  +P+V
Sbjct: 364 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSESGTVIMEPTQPNV 409

BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: gi|729404573|ref|XP_010554805.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Tarenaya hassleriana])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DS+TGTVIME NEP++
Sbjct: 367 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSETGTVIMEPNEPNI 412

BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: gi|661882195|emb|CDP14171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DSKTGTV+ME N+P+V
Sbjct: 306 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSKTGTVLMEPNQPNV 351

BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: gi|661869250|emb|CDP21587.1| (unnamed protein product, partial [Coffea canephora])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 57  VLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           VLAEKLNLNYEEAERWIVNL+RTSKLDAK+DSKTGTV+ME N+P+V
Sbjct: 306 VLAEKLNLNYEEAERWIVNLIRTSKLDAKIDSKTGTVLMEPNQPNV 351

BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: gi|659129262|ref|XP_008464598.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-13
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           +VLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTV+ME  +P+V
Sbjct: 359 NVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVVMEPIQPNV 405

BLAST of Cp4.1LG19g00370 vs. NCBI nr
Match: gi|449449799|ref|XP_004142652.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 6.5e-13
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1

Query: 56  SVLAEKLNLNYEEAERWIVNLVRTSKLDAKLDSKTGTVIMETNEPDV 103
           +VLAEKLNLNYEEAERWIVNLVRTSKLDAK+DSKTGTV+ME  +P+V
Sbjct: 359 NVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVLMEPVQPNV 405

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EIF3E_ARATH1.5e-1482.61Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana GN=... [more]
EIF3E_NEMVE8.8e-1065.96Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis G... [more]
EIF3E_XENTR9.7e-0965.12Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=ei... [more]
EIF3E_SALSA9.7e-0965.12Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=... [more]
EI3EA_XENLA9.7e-0965.12Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3... [more]
Match NameE-valueIdentityDescription
A0A068V0W8_COFCA7.0e-1486.96Eukaryotic translation initiation factor 3 subunit E OS=Coffea canephora GN=GSCO... [more]
A0A068VLU7_COFCA7.0e-1486.96Uncharacterized protein (Fragment) OS=Coffea canephora GN=GSCOC_T00012285001 PE=... [more]
A0A0A0L0F9_CUCSA4.5e-1385.11Eukaryotic translation initiation factor 3 subunit E OS=Cucumis sativus GN=Csa_4... [more]
A0A151U319_CAJCA5.9e-1384.78Eukaryotic translation initiation factor 3 subunit E OS=Cajanus cajan GN=KK1_006... [more]
A0A0B2S906_GLYSO5.9e-1384.78Eukaryotic translation initiation factor 3 subunit E OS=Glycine soja GN=glysoja_... [more]
Match NameE-valueIdentityDescription
AT3G57290.18.7e-1682.61 eukaryotic translation initiation factor 3E[more]
Match NameE-valueIdentityDescription
gi|729404573|ref|XP_010554805.1|1.0e-1386.96PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Tarenaya h... [more]
gi|661882195|emb|CDP14171.1|1.0e-1386.96unnamed protein product [Coffea canephora][more]
gi|661869250|emb|CDP21587.1|1.0e-1386.96unnamed protein product, partial [Coffea canephora][more]
gi|659129262|ref|XP_008464598.1|5.0e-1385.11PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis melo][more]
gi|449449799|ref|XP_004142652.1|6.5e-1385.11PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis sativus... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016650eIF3e
IPR011991Winged helix-turn-helix DNA-binding domain
IPR000717PCI_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0001732 formation of cytoplasmic translation initiation complex
biological_process GO:0009908 flower development
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0050826 response to freezing
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006606 protein import into nucleus
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009853 photorespiration
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0009933 meristem structural organization
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0019915 lipid storage
cellular_component GO:0005840 ribosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0008180 COP9 signalosome
cellular_component GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g00370.1Cp4.1LG19g00370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 56..96
score: 1.
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 58..100
score: 8.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 56..100
score: 9.2
IPR016650Eukaryotic translation initiation factor 3 subunit EPANTHERPTHR10317EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Ecoord: 56..102
score: 1.9

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g00370Cp4.1LG10g11360Cucurbita pepo (Zucchini)cpecpeB085
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g00370Cucumber (Chinese Long) v2cpecuB502
Cp4.1LG19g00370Bottle gourd (USVL1VR-Ls)cpelsiB392
Cp4.1LG19g00370Melon (DHL92) v3.6.1cpemedB546
Cp4.1LG19g00370Wax gourdcpewgoB0617
Cp4.1LG19g00370Cucurbita pepo (Zucchini)cpecpeB079