Cp4.1LG10g11360 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g11360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Eukaryotic translation initiation factor 3 subunit E
Location	Cp4.1LG10 : 9073351 .. 9076651 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAGCAACTCTACAATGGCGGATTACGATCTAACTCCACGAATTGCGCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAACATGGTTGATTACGCCATGGACATCCATAAGTCGCTGTACCACACTGACGATGTTCCTCAAGGCATGGACAATTCTTGGTTTTGATTTGATTGCTTATGGGTTTCTTTTTTTTTGTTATTTTTTTAATTATTGATGTGTGTTGGGTCTAAATTTGTGATGGGATTGGCGCAGATATGGTGGACAGGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCGCTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGGTTGAGTTTATGGTCTTAGATTTACATGTGCTTTATTTACCATAAACAACGCTAATTTCTTTGTTCCTGCTCGAGTTGGTTTGTTCTTTGGGGCATAGGGAGCTTTGATGCTGATATGCCATGATTTTGTACAATTTCTTTGCTTCTTTTGTGTAAAATTCTTATTATATTTGATTCAGTTGGGGTTTCTTTAATTTCCATCTAATATTGATAGCTATTATTGATTTTCTGTAGAACCCTAATTCCAGATTGGTCCATATCNTAAACAACGCTAATTTCTTTGTTCCTGCTCGAGTTGGTTTGTTCTTTGGGGCATAGGGAGCTTTGATGCTGATATGCCATGATTTTGTACAATTTCTTTGCTTCTTTTGTGTAAAACTCTTATTATATTTGATTCAGTTGGGGTTTCTTTAATTTCCATCTAATATTGATAGCTATTATTGATTTTCTGTAGAACCCTAATTCCAGATTGGTCCAGATAAAATAGAAGTATTATATCAATATGCCATGATTCTTTACAATTTCTTTGCTCCTTTTGTGTAAAACTCTTATTATATTTGTTTCAGTTGGGGTTTCTTTAATTTTCCATCTAATATTGTCAATGATTATTGATTTATCGTTTTGGGTTTCATAAAACCCTAATTCCAGATTGGTCCAGATCAAATAGAAGCTCTATATCAATATGCCAAATTTCAGTTCGAGTGCGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCTTTGTGCACAAACAGTGAAAGAAGCCTGAGTGCTCTATGGGGAAAATGGGCAGCTGAGATTTTAATGCAGAACTGGGATACTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATCGACTCTAAGGTGGTGTGGCCTATCTAGTTTCTTCCTTTTTTTTGTACAATAATATGTCATCACGTTACTGACTTTTTTTCTGGTAATGTCTATTTAAGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTAAGTATACTAAATTTGGCCTTTTTTCACTACGTTTTACTGATACCGCATGGAGATGTCCCATACGTCCTCCATTATCATGTTGTTTCCCTGTTGTAATGTTCGATGATTTTGTAATCTAGTCTTGTAGAGATGAGTTAAGAATAGAGGATGCATGGAGATGAGTTAATTCAGGCCTTTCCATGTTTTAATGAGCTGGTAATTTTCTTATCTGTAGGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGAGTGTGAAGAAGTAAGTTTCCTGCTTCTCTTTTTCACTAGGAATTAGGGAGTTATATGCTAATTTACGATGGTGCTTTTTTGTTCATTGTTTTCATGGTGGGGTTTTGCATCTGTTTGGATGGTTCGGTTATTAAGTCCTATTCTAGCTGGCCGTGAACGATAAATGTAATCAATTTTTAGATTTTCCCCTGTTATCAAGTCATAATTAACTTACTTTTCCTCAATGTAGGTTATATTGAATGACCCTTTCCTAGGAAAGAGGCTTGAAGAGGGAAACCTTTCTACCGTTCCTTTGAGGGATGAGTTCTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGACATGAGGTGCATATTCATTCTCTTTTTAAATTTATTTTATACTTCTCTTTCCATATTTTAAGTTATCCCTTGCTTGCATATTTTCTGTCATTGTGAGTTATCTTGTTTCATTTCGTTATTATAAATGACATGCTGGTAACTTGTGGCAGTGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCAGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTGTAAGTATATTTCCCGATTGTAGATTTTTACATCAGCAAAACCATTTCTCAGCCTTCCCGAGCGTGCCCTATATATGCGTTGCAAATTTTGTCGATGAACTTTCTTGGTTGTCTTTGAACTTTAAAGTGTCTAGTTGGGTCTGTACGCTTAGTGTACAATAGATCGAATAGACAGACGGTAATAAAATTTGAGATATAGTGCATATTCTCGTTTCGATTAGCTCTGTTCGTTAAATTTTTGCCTCCTGAAGTGTAAAACCTTTGAATCAATTATTGGTGTGCTTGGTTTCAGATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAAGCAACCAGATAAATTTTGGATATTTGGCCTTTTTTCTTTGTTATATTTTCTGAACCTCTCATCTGACAAACAAACAGCAGAGATCTGAGCAACATTTTCCATATTTGATTCCTTATTTCTAAGGAAATGATATGTAACTTTTCATAATTTTTGTCAATTTATGTTTAAGTGTAGAATTATGAATTTGATTATCTTGTTCATTATCTTGTCAATTATTTTTTTTCTTTTTTTTTTCCGAGAGTAATTTGAAAATTAGACAATTATC

mRNA sequence

CACAAGCAACTCTACAATGGCGGATTACGATCTAACTCCACGAATTGCGCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAACATGGTTGATTACGCCATGGACATCCATAAGTCGCTGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCGCTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGATGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCAGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAAGCAACCAGATAAATTTTGGATATTTGGCCTTTTTTCTTTGTTATATTTTCTGAACCTCTCATCTGACAAACAAACAGCAGAGATCTGAGCAACATTTTCCATATTTGATTCCTTATTTCTAAGGAAATGATATGTAACTTTTCATAATTTTTGTCAATTTATGTTTAAGTGTAGAATTATGAATTTGATTATCTTGTTCATTATCTTGTCAATTATTTTTTTTCTTTTTTTTTTCCGAGAGTAATTTGAAAATTAGACAATTATC

Coding sequence (CDS)

ATGGCGGATTACGATCTAACTCCACGAATTGCGCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAACATGGTTGATTACGCCATGGACATCCATAAGTCGCTGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCGCTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGATGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCAGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAAGCAACCAGATAA

Protein sequence

MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESAAPLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRDVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR

Homology

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BLAST of Cp4.1LG10g11360 vs. Swiss-Prot
Match: EIF3E_ARATH (Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana GN=TIF3E1 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52
Identity = 116/203 (57.14%), Postives = 145/203 (71.43%), Query Frame = 1


Query: 23  LEFLQER-QLYPDE-----QILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ L+ER Q+ PD+     Q  K + E  N +   DY    +++L + +   L AL    
Sbjct: 117 LQMLKERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQ-YRTLCSNLERSLSALWGKL 176

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  +       A++EL   K+    +++ +  +FSS +NQVQ+RIWLMHW L+IFFNHDN
Sbjct: 177 ASEILMQNWDIALEELNRLKE----IIDSK--SFSSPLNQVQNRIWLMHWGLYIFFNHDN 236

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 202
           GRTQIIDLFNQDKYL+AIQT+APHLLRYLATAFIVNKRRRPQ K+FIKVIQQE  SYKDP
Sbjct: 237 GRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQLKEFIKVIQQEHYSYKDP 296

Query: 203 ITEFLTCVYVNYDFDGAQKKMRD 220
           I EFL CV+VNYDFDGAQKKM++
Sbjct: 297 IIEFLACVFVNYDFDGAQKKMKE 312

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BLAST of Cp4.1LG10g11360 vs. Swiss-Prot
Match: EIF3E_NEMVE (Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-51
Identity = 107/208 (51.44%), Postives = 133/208 (63.94%), Query Frame = 1


Query: 117 VQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLSAIQTNAPHLLRYLATAFIVNKRR 176
           +Q R WL+HWSLF+FFNH  GR  IIDL   Q +YL+AIQT  PH+LRYL TA I NKRR
Sbjct: 209 LQERTWLIHWSLFVFFNHPKGRDLIIDLILYQPQYLNAIQTMCPHILRYLTTAVITNKRR 268

Query: 177 RPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRD---------------- 236
           RP  KD +KVIQQE  +Y+DPITEFL C+YVN+DFDGAQKK+R+                
Sbjct: 269 RPVLKDLVKVIQQESYTYRDPITEFLECLYVNFDFDGAQKKLRECETVLLNDFFLVACRD 328

Query: 237 ------------------------VLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGT 284
                                   +LAEKLN+  EEAE+WIVNL+R +KLDAKIDSK G 
Sbjct: 329 DFIENARLFIFETFCRIHQCISISMLAEKLNMTPEEAERWIVNLIRNAKLDAKIDSKLGH 388

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BLAST of Cp4.1LG10g11360 vs. Swiss-Prot
Match: EI3EA_XENLA (Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3e-a PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.8e-48
Identity = 106/221 (47.96%), Postives = 136/221 (61.54%), Query Frame = 1


Query: 111 SSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLSAIQTNAPHLLRYLATAF 170
           SS +  +Q R WL+HWSLF+FFNH  GR  IIDLF  Q +YL+AIQT  PH+LRYL TA 
Sbjct: 203 SSPLQSLQHRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAV 262

Query: 171 IVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRDV------ 230
           I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK+R+       
Sbjct: 263 ITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVN 322

Query: 231 ----------------------------------LAEKLNLNYEEAEQWIVNLVRTSKLD 288
                                             LA+KLN+  EEAE+WIVNL+R ++LD
Sbjct: 323 DFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLD 382

[Close]

BLAST of Cp4.1LG10g11360 vs. Swiss-Prot
Match: EIF3E_XENTR (Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=eif3e PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.8e-48
Identity = 106/221 (47.96%), Postives = 136/221 (61.54%), Query Frame = 1


Query: 111 SSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLSAIQTNAPHLLRYLATAF 170
           SS +  +Q R WL+HWSLF+FFNH  GR  IIDLF  Q +YL+AIQT  PH+LRYL TA 
Sbjct: 203 SSPLQSLQHRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAV 262

Query: 171 IVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRDV------ 230
           I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFDGAQKK+R+       
Sbjct: 263 ITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVN 322

Query: 231 ----------------------------------LAEKLNLNYEEAEQWIVNLVRTSKLD 288
                                             LA+KLN+  EEAE+WIVNL+R ++LD
Sbjct: 323 DFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLD 382

[Close]

BLAST of Cp4.1LG10g11360 vs. Swiss-Prot
Match: EIF3E_SALSA (Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.2e-48
Identity = 108/231 (46.75%), Postives = 142/231 (61.47%), Query Frame = 1


Query: 111 SSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLSAIQTNAPHLLRYLATAF 170
           SS +  +Q R WL+HWSLF+FFNH  GR  II+LF  Q +YL+AIQT  PH+LRYL TA 
Sbjct: 203 SSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIELFLYQPQYLNAIQTMCPHILRYLTTAV 262

Query: 171 IVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRDV------ 230
           I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+DFD AQKK+R+       
Sbjct: 263 ITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQKKLRECESVLVN 322

Query: 231 ----------------------------------LAEKLNLNYEEAEQWIVNLVRTSKLD 290
                                             LA+KLN+  EEAE+WIVNL+R ++LD
Sbjct: 323 DFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLD 382

Query: 291 AKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR 298
           AKIDSK G V+M  N  + Y+++I+ TKSLS R+ +++   +E   A A+R
Sbjct: 383 AKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRS-QMLAMNIEKKMAHASR 432

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BLAST of Cp4.1LG10g11360 vs. TrEMBL
Match: A0A103XJU0_CYNCS (Eukaryotic translation initiation factor 3 subunit E OS=Cynara cardunculus var. scolymus GN=Ccrd_005970 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 152/201 (75.62%), Postives = 172/201 (85.57%), Query Frame = 1


Query: 108 QNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLAT 167
           QNFSS +NQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYL+AIQTNAPHLLRYLAT
Sbjct: 282 QNFSSSLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLAT 341

Query: 168 AFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGA-----------QKK 227
           AFIVNK+RRP FK+FIKVIQQEQ+S+ DPITEFL CVY  +  +             ++ 
Sbjct: 342 AFIVNKKRRPLFKEFIKVIQQEQHSFADPITEFLACVYDEFLENARLFIFETYCRIHERI 401

Query: 228 MRDVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSL 287
              VLAEKLNLNYE+AE+WI+NL+RTSKLDAKID++TGTV+MEPN PNVYE+LIDHTK L
Sbjct: 402 NMGVLAEKLNLNYEDAERWILNLIRTSKLDAKIDTQTGTVVMEPNHPNVYEQLIDHTKGL 461

Query: 288 SGRTYKLVTQLLEHAQAQATR 298
           SGRTYKLVTQLLE++Q QA R
Sbjct: 462 SGRTYKLVTQLLENSQPQAAR 482

[Close]

BLAST of Cp4.1LG10g11360 vs. TrEMBL
Match: G3NP77_GASAC (Eukaryotic translation initiation factor 3 subunit E OS=Gasterosteus aculeatus GN=eif3e PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.1e-67
Identity = 159/368 (43.21%), Postives = 220/368 (59.78%), Query Frame = 1


Query: 1   MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKS 60
           MA+YDLT +IA  LDRHLVFPLLEFL  +++Y ++++L  K++LL++TNMVD+AMD+++S
Sbjct: 1   MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEQELLHGKLDLLSETNMVDFAMDVYRS 60

Query: 61  L-------------RAEVVGRLKALEESAAPLVTF------------LQNPAAVQELRAD 120
           L             R EVV +LK L+    P+V              L +   +Q   A 
Sbjct: 61  LYSEKEIPHTLREKRTEVVAQLKQLQSETEPIVPATDRNALNSLWGKLASEILMQNWEAA 120

Query: 121 KQYNLQMLNDRYQNFS--SHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLS 180
            + +L  L +   N S  S +  +Q R WL+HWSLF+FFNH  GR  II+LF  Q +YL+
Sbjct: 121 ME-DLTRLRETIDNNSVTSPLQALQQRTWLIHWSLFVFFNHPKGRDNIIELFLYQPQYLN 180

Query: 181 AIQTNAPHLLRYLATAFIVNK---RRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYD 240
           AIQT  PH+LRYL TA I NK   +RR   KD +KVIQQE  +YKDPITEF+ C+YVN+D
Sbjct: 181 AIQTMCPHILRYLTTAIITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFD 240

Query: 241 FDGAQKKMRDV----------------------------------------LAEKLNLNY 298
           FD AQKK+R+                                         LA+KLN+  
Sbjct: 241 FDSAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMTP 300

[Close]

BLAST of Cp4.1LG10g11360 vs. TrEMBL
Match: A0A059DH73_EUCGR (Eukaryotic translation initiation factor 3 subunit E OS=Eucalyptus grandis GN=EUGRSUZ_A02306 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-63
Identity = 160/332 (48.19%), Postives = 200/332 (60.24%), Query Frame = 1


Query: 23  LEFLQERQLYPDEQI------LKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ LQ+R     EQI       K + E  N +   DY    +++L       L AL    
Sbjct: 113 LQMLQDRHQIGPEQIEALYQYAKFQFECGNYSGAADYLYQ-YRALCTNSERNLSALWGKL 172

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  +       A++EL   K+    +++ +  +FSS +NQVQSRIWLM+WSLFIFFN++N
Sbjct: 173 AAEILMQNWDIALEELNRLKE----IIDSK--SFSSPLNQVQSRIWLMNWSLFIFFNNEN 232

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKV----------- 202
           GRTQIIDLFNQDKYL+AIQTNAPHLLRYLATAFIVNKRRRPQFKDFI+V           
Sbjct: 233 GRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIRVVQQEQHAFKDP 292

Query: 203 ---------------------IQQEQNSYKDPIT----------------EFL--TCVYV 262
                                 + E+    DP                  EFL    +++
Sbjct: 293 IIEFLACVYVNYDFDGAQKKMRECEELILNDPFLGKRVEEGNFSTVPLRDEFLENARLFI 352

Query: 263 NYDFDGAQKKMR-DVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNV 298
              +    +++   VLAEK+NLNYEEAE+WIVNL+RTSKL+AKIDSK GT+++EPN PNV
Sbjct: 353 FETYCRIHRRIDLGVLAEKVNLNYEEAERWIVNLIRTSKLEAKIDSKLGTIVIEPNNPNV 412

[Close]

BLAST of Cp4.1LG10g11360 vs. TrEMBL
Match: A0A0E0HX29_ORYNI (Eukaryotic translation initiation factor 3 subunit E OS=Oryza nivara PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 140/262 (53.44%), Postives = 177/262 (67.56%), Query Frame = 1


Query: 1   MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKS 60
           MA++DLT R+A +LD HLV PLLEFLQER LYP+E+IL+AKI LL  TNMVDYAMDIHKS
Sbjct: 1   MAEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKS 60

Query: 61  -----------------------------LRAEVVGRLKALEESAAPLVTFLQNPAAVQE 120
                                          A+ + + +AL  +    ++ L    A + 
Sbjct: 61  RYGTDDIGPDQIETLYQCAKFQFDCGIYSFAAQYLHQYRALCTNIERSLSALWGKLAAEI 120

Query: 121 LRADKQYNLQMLNDRYQ-----NFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFN 180
           L  +    L+ LN   +     NFSS +NQ+Q+RIWLMHWS+FIF+NH+NGR  IIDLF 
Sbjct: 121 LMQNWDVALEELNRLKEIIDSKNFSSPLNQLQNRIWLMHWSIFIFYNHENGRNGIIDLFF 180

Query: 181 QDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYV 229
           Q++YL+AIQTNAPHLLRYLATA +VNKRRR   K+ IKVIQQEQ+SYKDPITEFL C++V
Sbjct: 181 QERYLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSYKDPITEFLECLFV 240

[Close]

BLAST of Cp4.1LG10g11360 vs. TrEMBL
Match: A0A0A0L0F9_CUCSA (Eukaryotic translation initiation factor 3 subunit E OS=Cucumis sativus GN=Csa_4G343070 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 134/212 (63.21%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 23  LEFLQER-QLYPDE-----QILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ L +R Q+ PD+     Q  K + E  N +   DY    +++L       L AL    
Sbjct: 113 LQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQ-YRALCTNSERSLSALWGKL 172

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  V       AV+EL   K+    +++ +  NFSS MNQVQSRIWLMHWSLFIFFNHDN
Sbjct: 173 AAEVLMQNWDIAVEELNRLKE----IIDSK--NFSSPMNQVQSRIWLMHWSLFIFFNHDN 232

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 202
           GRTQIIDLFNQDKYL+AIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP
Sbjct: 233 GRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 292

Query: 203 ITEFLTCVYVNYDFDGAQKKMRDVLAEKLNLN 229
           ITEFLTCVYVNYDFDGAQKKMR+   E++ LN
Sbjct: 293 ITEFLTCVYVNYDFDGAQKKMRE--CEEVILN 315

[Close]

BLAST of Cp4.1LG10g11360 vs. TAIR10
Match: AT3G57290.1 (AT3G57290.1 eukaryotic translation initiation factor 3E)

HSP 1 Score: 208.0 bits (528), Expect = 8.1e-54
Identity = 116/203 (57.14%), Postives = 145/203 (71.43%), Query Frame = 1


Query: 23  LEFLQER-QLYPDE-----QILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ L+ER Q+ PD+     Q  K + E  N +   DY    +++L + +   L AL    
Sbjct: 117 LQMLKERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQ-YRTLCSNLERSLSALWGKL 176

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  +       A++EL   K+    +++ +  +FSS +NQVQ+RIWLMHW L+IFFNHDN
Sbjct: 177 ASEILMQNWDIALEELNRLKE----IIDSK--SFSSPLNQVQNRIWLMHWGLYIFFNHDN 236

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 202
           GRTQIIDLFNQDKYL+AIQT+APHLLRYLATAFIVNKRRRPQ K+FIKVIQQE  SYKDP
Sbjct: 237 GRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQLKEFIKVIQQEHYSYKDP 296

Query: 203 ITEFLTCVYVNYDFDGAQKKMRD 220
           I EFL CV+VNYDFDGAQKKM++
Sbjct: 297 IIEFLACVFVNYDFDGAQKKMKE 312

[Close]

BLAST of Cp4.1LG10g11360 vs. NCBI nr
Match: gi|976904283|gb|KVH92008.1| (Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal [Cynara cardunculus var. scolymus])

HSP 1 Score: 303.9 bits (777), Expect = 3.1e-79
Identity = 152/201 (75.62%), Postives = 172/201 (85.57%), Query Frame = 1


Query: 108 QNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLAT 167
           QNFSS +NQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYL+AIQTNAPHLLRYLAT
Sbjct: 282 QNFSSSLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLAT 341

Query: 168 AFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGA-----------QKK 227
           AFIVNK+RRP FK+FIKVIQQEQ+S+ DPITEFL CVY  +  +             ++ 
Sbjct: 342 AFIVNKKRRPLFKEFIKVIQQEQHSFADPITEFLACVYDEFLENARLFIFETYCRIHERI 401

Query: 228 MRDVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSL 287
              VLAEKLNLNYE+AE+WI+NL+RTSKLDAKID++TGTV+MEPN PNVYE+LIDHTK L
Sbjct: 402 NMGVLAEKLNLNYEDAERWILNLIRTSKLDAKIDTQTGTVVMEPNHPNVYEQLIDHTKGL 461

Query: 288 SGRTYKLVTQLLEHAQAQATR 298
           SGRTYKLVTQLLE++Q QA R
Sbjct: 462 SGRTYKLVTQLLENSQPQAAR 482

[Close]

BLAST of Cp4.1LG10g11360 vs. NCBI nr
Match: gi|702247465|ref|XP_010056741.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Eucalyptus grandis])

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 160/332 (48.19%), Postives = 200/332 (60.24%), Query Frame = 1


Query: 23  LEFLQERQLYPDEQI------LKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ LQ+R     EQI       K + E  N +   DY    +++L       L AL    
Sbjct: 113 LQMLQDRHQIGPEQIEALYQYAKFQFECGNYSGAADYLYQ-YRALCTNSERNLSALWGKL 172

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  +       A++EL   K+    +++ +  +FSS +NQVQSRIWLM+WSLFIFFN++N
Sbjct: 173 AAEILMQNWDIALEELNRLKE----IIDSK--SFSSPLNQVQSRIWLMNWSLFIFFNNEN 232

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKV----------- 202
           GRTQIIDLFNQDKYL+AIQTNAPHLLRYLATAFIVNKRRRPQFKDFI+V           
Sbjct: 233 GRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIRVVQQEQHAFKDP 292

Query: 203 ---------------------IQQEQNSYKDPIT----------------EFL--TCVYV 262
                                 + E+    DP                  EFL    +++
Sbjct: 293 IIEFLACVYVNYDFDGAQKKMRECEELILNDPFLGKRVEEGNFSTVPLRDEFLENARLFI 352

Query: 263 NYDFDGAQKKMR-DVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNV 298
              +    +++   VLAEK+NLNYEEAE+WIVNL+RTSKL+AKIDSK GT+++EPN PNV
Sbjct: 353 FETYCRIHRRIDLGVLAEKVNLNYEEAERWIVNLIRTSKLEAKIDSKLGTIVIEPNNPNV 412

[Close]

BLAST of Cp4.1LG10g11360 vs. NCBI nr
Match: gi|999988839|gb|KXJ27907.1| (Eukaryotic translation initiation factor 3 subunit E [Exaiptasia pallida])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 144/343 (41.98%), Postives = 196/343 (57.14%), Query Frame = 1


Query: 1   MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAM--DIH 60
           MA++DLT R+   LDRHLVFPLLEFL  +++Y ++++LK K+ELL+ TNMV   M   ++
Sbjct: 1   MAEHDLTSRMGCFLDRHLVFPLLEFLSVKEIYDEQELLKGKLELLSNTNMVRPEMMDTLY 60

Query: 61  KSLR-----------AEVVGRLKALEESA-APLVTFLQNPAAVQELRADKQYNLQMLNDR 120
           K  +           AE +   + L        +  L    A + L  +    L  LN  
Sbjct: 61  KYAKFQYECGNYAGAAEYLYFFRVLSPGGDRNSLNALWGKLASEILMQNWDTALDDLNRL 120

Query: 121 YQNFSSH-----MNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLF-NQDKYLSAIQTNAPH 180
            +    +     +  +Q R WL+HWSLF+FFNH  GR  IIDLF  Q +YL+AIQT  PH
Sbjct: 121 KEVIEGNTSAGTLQLLQERTWLIHWSLFVFFNHPKGRDLIIDLFLYQPQYLNAIQTMCPH 180

Query: 181 LLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRD- 240
           +LRYL TA I +KRRR   KD +KVIQQE  +Y+DPITEFL C+YVN+DFDGAQ K+R+ 
Sbjct: 181 ILRYLTTAVITSKRRRQVLKDLVKVIQQESYTYRDPITEFLECLYVNFDFDGAQTKLREC 240

Query: 241 ---------------------------------------VLAEKLNLNYEEAEQWIVNLV 284
                                                  +LA+KLN++ EEAE+WIVNL+
Sbjct: 241 ETVLVNDFFLVACLDDFIENARLFIFETFCRIHQCISISMLADKLNMSPEEAERWIVNLI 300

[Close]

BLAST of Cp4.1LG10g11360 vs. NCBI nr
Match: gi|449449799|ref|XP_004142652.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 134/212 (63.21%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 23  LEFLQER-QLYPDE-----QILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ L +R Q+ PD+     Q  K + E  N +   DY    +++L       L AL    
Sbjct: 113 LQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQ-YRALCTNSERSLSALWGKL 172

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  V       AV+EL   K+    +++ +  NFSS MNQVQSRIWLMHWSLFIFFNHDN
Sbjct: 173 AAEVLMQNWDIAVEELNRLKE----IIDSK--NFSSPMNQVQSRIWLMHWSLFIFFNHDN 232

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 202
           GRTQIIDLFNQDKYL+AIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP
Sbjct: 233 GRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 292

Query: 203 ITEFLTCVYVNYDFDGAQKKMRDVLAEKLNLN 229
           ITEFLTCVYVNYDFDGAQKKMR+   E++ LN
Sbjct: 293 ITEFLTCVYVNYDFDGAQKKMRE--CEEVILN 315

[Close]

BLAST of Cp4.1LG10g11360 vs. NCBI nr
Match: gi|659129262|ref|XP_008464598.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 134/212 (63.21%), Postives = 153/212 (72.17%), Query Frame = 1


Query: 23  LEFLQER-QLYPDE-----QILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESA 82
           L+ L +R Q+ PD+     Q  K + E  N +   DY    +++L       L AL    
Sbjct: 113 LQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQ-YRALCTNSERSLSALWGKL 172

Query: 83  APLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDN 142
           A  V       AV+EL   K+    +++ +  NFSS MNQVQSRIWLMHWSLFIFFNHDN
Sbjct: 173 AAEVLMQNWDIAVEELNRLKE----IIDSK--NFSSPMNQVQSRIWLMHWSLFIFFNHDN 232

Query: 143 GRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 202
           GRTQIIDLFNQDKYL+AIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP
Sbjct: 233 GRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDP 292

Query: 203 ITEFLTCVYVNYDFDGAQKKMRDVLAEKLNLN 229
           ITEFLTCVYVNYDFDGAQKKMR+   E++ LN
Sbjct: 293 ITEFLTCVYVNYDFDGAQKKMRE--CEEVILN 315

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EIF3E_ARATH	1.4e-52	57.14	Eukaryotic translation initiation factor 3 subunit E OS=Arabidopsis thaliana GN=...	[more]
EIF3E_NEMVE	4.6e-51	51.44	Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis G...	[more]
EI3EA_XENLA	2.8e-48	47.96	Eukaryotic translation initiation factor 3 subunit E-A OS=Xenopus laevis GN=eif3...	[more]
EIF3E_XENTR	2.8e-48	47.96	Eukaryotic translation initiation factor 3 subunit E OS=Xenopus tropicalis GN=ei...	[more]
EIF3E_SALSA	6.2e-48	46.75	Eukaryotic translation initiation factor 3 subunit E OS=Salmo salar GN=eif3e PE=...	[more]

BLAST of Cp4.1LG10g11360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103XJU0_CYNCS	2.1e-79	75.62	Eukaryotic translation initiation factor 3 subunit E OS=Cynara cardunculus var. ...	[more]
G3NP77_GASAC	1.1e-67	43.21	Eukaryotic translation initiation factor 3 subunit E OS=Gasterosteus aculeatus G...	[more]
A0A059DH73_EUCGR	1.3e-63	48.19	Eukaryotic translation initiation factor 3 subunit E OS=Eucalyptus grandis GN=EU...	[more]
A0A0E0HX29_ORYNI	1.6e-63	53.44	Eukaryotic translation initiation factor 3 subunit E OS=Oryza nivara PE=3 SV=1	[more]
A0A0A0L0F9_CUCSA	1.3e-57	63.21	Eukaryotic translation initiation factor 3 subunit E OS=Cucumis sativus GN=Csa_4...	[more]

BLAST of Cp4.1LG10g11360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57290.1	8.1e-54	57.14	eukaryotic translation initiation factor 3E	[more]

BLAST of Cp4.1LG10g11360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976904283\|gb\|KVH92008.1\|	3.1e-79	75.62	Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal [Cynara...	[more]
gi\|702247465\|ref\|XP_010056741.1\|	1.8e-63	48.19	PREDICTED: eukaryotic translation initiation factor 3 subunit E [Eucalyptus gran...	[more]
gi\|999988839\|gb\|KXJ27907.1\|	1.3e-58	41.98	Eukaryotic translation initiation factor 3 subunit E [Exaiptasia pallida]	[more]
gi\|449449799\|ref\|XP_004142652.1\|	1.9e-57	63.21	PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis sativus...	[more]
gi\|659129262\|ref\|XP_008464598.1\|	1.9e-57	63.21	PREDICTED: eukaryotic translation initiation factor 3 subunit E [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005852	eukaryotic translation initiation factor 3 complex
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019010	eIF3e_N
IPR016650	eIF3e
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR000717	PCI_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0009908	flower development
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0071540	eukaryotic translation initiation factor 3 complex, eIF3e
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11360.1	Cp4.1LG10g11360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 220..259 score: 3.
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 221..263 score: 2.
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 219..264 score: 7.8
IPR016650	Eukaryotic translation initiation factor 3 subunit E	PANTHER	PTHR10317	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E	coord: 2..295 score: 1.1E
IPR019010	Eukaryotic translation initiation factor 3 subunit E, N-terminal	PFAM	PF09440	eIF3_N	coord: 5..115 score: 3.3
IPR019010	Eukaryotic translation initiation factor 3 subunit E, N-terminal	SMART	SM01186	eIF3_N_2	coord: 5..111 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g11360	Cucsa.018140	Cucumber (Gy14) v1	cgycpeB0693
Cp4.1LG10g11360	CmaCh03G000440	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g11360	CmaCh07G013430	Cucurbita maxima (Rimu)	cmacpeB863
Cp4.1LG10g11360	CmoCh07G013840	Cucurbita moschata (Rifu)	cmocpeB803
Cp4.1LG10g11360	CmoCh03G000410	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g11360	Cla006836	Watermelon (97103) v1	cpewmB087
Cp4.1LG10g11360	Csa4G343070	Cucumber (Chinese Long) v2	cpecuB076
Cp4.1LG10g11360	MELO3C026327	Melon (DHL92) v3.5.1	cpemeB075
Cp4.1LG10g11360	ClCG04G003770	Watermelon (Charleston Gray)	cpewcgB073
Cp4.1LG10g11360	CSPI04G17210	Wild cucumber (PI 183967)	cpecpiB074
Cp4.1LG10g11360	Lsi01G018090	Bottle gourd (USVL1VR-Ls)	cpelsiB053
Cp4.1LG10g11360	MELO3C026327.2	Melon (DHL92) v3.6.1	cpemedB097
Cp4.1LG10g11360	CsaV3_4G027730	Cucumber (Chinese Long) v3	cpecucB0082
Cp4.1LG10g11360	Bhi03G001964	Wax gourd	cpewgoB0088
Cp4.1LG10g11360	CsGy4G016470	Cucumber (Gy14) v2	cgybcpeB471
Cp4.1LG10g11360	Carg24996	Silver-seed gourd	carcpeB0742
Cp4.1LG10g11360	Carg21120	Silver-seed gourd	carcpeB0665

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g11360	Cp4.1LG19g00370	Cucurbita pepo (Zucchini)	cpecpeB085

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g11360	Cucurbita maxima (Rimu)	cmacpeB418
Cp4.1LG10g11360	Bottle gourd (USVL1VR-Ls)	cpelsiB055
Cp4.1LG10g11360	Watermelon (97103) v1	cpewmB085