Cp4.1LG18g08100 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g08100
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG18 : 7540062 .. 7542508 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAGGTTCAGCCACCTGCCTCTCACTTCGCTCCTCAGCTCTAATCCATGGTTAACCATTCAAGTTTCAGGTTCCTCTCTCTCTCTCTCTTAGCGCTCTCTTCTTCTGCAGAACGAGCTTATTTGCTTTCTATTTTTGGTTCGTTAATGGCTGCTCAGTACTCTTTTAGGTCGTCTTTGGTCCCATTTTTGGAATTGATTAGATTGGTTTGATTATGCTTTTTTTATTTGTGGTGGAAAGTGTTGGTTCATGTTTCAGTTTGTTCGTATCATCCATCGATGAAATTGAATTACGTCAGTTGAATTTTTATATTCCTAGGCTGAATTTTTATCGTCAATTAGTGGTTTTCTGAAGAACTCGTGACAGATCGTCAAGTAGTGATTATGTTGCGAGCAAAGCAGATTGACAGTGTTTCAAACTGGGACAGATCATTTTTTTTTTGTGGTGTTACACAAAATGGGGTGATCTGTTGAACTCGCTCGATCAATTCAATTTAATCCATATGGTTAGGTTTGAGTTATCAATTAACTTAGGTTGGGATAGGTTCAAATAAAAAACTCAATGTAGGGTACTATAGTTGGGTTGAGCCGAACTAATTCAAATTTATTTAATTTCATAATTATTTTTTTCTCTATTTGGAAGGTAGTTTTTCAAAATATATATTGAAATGAAGTGTAAGTCTTGACTCAATATTTGGAAATAAACAATGACCCTAACAACTCGAACTAATCCAATCTAAATGTTTTCTAGTTAATTTAGGTATGATTTATTATTTAATAAGGTTGCTTAGGTTGAAAATTTTGTTTGGAAATAAATAATGAACTTAACAACCTGCACCAATCAAATCCAAATATTTTATAGTTAAGTATGATTCATTATTTAATAAGGGTTACTTACGTTCAAAAAGATTTACGACCTGTACAATTGGGTTGGGTCTAAAAAATGTTTCAACCTGACCAAACTCAACCCGTGAGCATCCTTTATTTTTAGACGAAACTTGTGTTTCCCAGGGACAAAATGGTAGTAGTGAAATCCTGCCCTCACAAAAGGATGCACCTTGATAGCCAATAGTTCAGGAAGCTTTAATTGCAGAAAATGCAACAAAAGTAATTATGTCTCATGAAACTGACGACGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAGCTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGTGAGCTTCTTCTCTGACTTTGTGAATTCTAAAGTCCCCTTATCTGACTATGATTGAACATTTAGCTCATTTAAAATTTGCATGGTTGATCTTGCCCGGTCCATTTCTTCTGTGAAACCTTAAAAAATCAAACATCTAAGAAGAGAGAACATTCCTATAGATTTTAAGCCTCAAAGTAGTAGTAACCATCATGGTCCAAATTGCAAGGCTGAGCAATTCAATAATTATGTTAAAGGCTCAAAGCAAGTTCCAGAGGCTAGGATGCGAAAGTCAGTGGTATTTCATAATATCTCCTCAGAAAATTGTGATAAATTAAAGGACTATACCTAAGAGAACAAGAGTTTATTCAAACAGCTTTGGCCATAGGTTCCATAGTTCACAAAGTCTTCCAAGAATTTGAAAAAACTTGCAGATAATTTTAAAAGCTCAATAAGATGAAACCAATCGCTCCACTGTTTTTTAATGCCCCATATGTTATGGAAAGTGTTTTTTGCGTATTGCAACAACTTGGCCCTGTTTCTGAAGAGGCTCTTGGAAAATTGAACGATTCAATAGATGCATACCAGGCCAACCAAATTCTGAAGTGGGTAGATTACCACTCTGTTGCTCTTGTTTTTTTTTTTTTTTTTTAAATTGATTAAAGCGCATGGCTAGGTTTAGACATGATGGACACACTTGTACTAGTATGATTGGCCTCCTTAATCGTGCCAAACAGTTTGGTGCAATAAATAGACTGCTTTATCAAATGATCAAGGATGGGTGTCAGCCCAATGTTGTAACATGTAATTGTATAATTCATTGTTATGATTGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

mRNA sequence

ATGGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

Coding sequence (CDS)

ATGGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATGCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCATGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTCTGGCCATTAGAAGTTGCATATAGGCTATACTATAGGATGGTTGATCAGGGTTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACTATATCCAATAG

Protein sequence

MGSEPDGVTYCTLIDIHAKSSILDIPWECMRGCMRLASLRIHLLTVWPLEVAYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYIQ
Homology
[Close]
BLAST of Cp4.1LG18g08100 vs. Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-15
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMR---------GCMRLASLRIHLLTVWPLEVA 61
           G EPD VTYCTLIDIHAK+  LDI  +  +              + +   L     L  A
Sbjct: 424 GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           +RL+  MV QGC PNLVT+NIMIAL AKARNY
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 515

[Close]
BLAST of Cp4.1LG18g08100 vs. Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-14
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMR----GCMRLASLRIHLLT-----VWPLEVA 61
           G +PD VTYCTLIDIHAK+  LDI  +  +    G +   +    ++         L  A
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           ++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match: A0A0A0LRL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008500 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIP---WECMRGCMRLA-----SLRIHLL-TVWPLEVA 61
           G EPD VTYCTLIDIHAKS  LD+    +E M+           S+ I+ L     L  A
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAA 503

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 87
           +RL+ RMVD+GCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 HRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEI 537

[Close]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match: K7KVW1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G189500 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 447 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 506

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 507 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 539

[Close]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match: A0A0B2P2M2_GLYSO (Pentatricopeptide repeat-containing protein (Fragment) OS=Glycine soja GN=glysoja_043796 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 464 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 523

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 524 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 556

[Close]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match: I1KCN8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G189500 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 450 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 509

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 510 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 542

[Close]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match: I1JWZ7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G175400 PE=4 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 450 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 509

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 510 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 542

[Close]
BLAST of Cp4.1LG18g08100 vs. TAIR10
Match: AT1G74750.1 (AT1G74750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMR---------GCMRLASLRIHLLTVWPLEVA 61
           G EPD VTYCTLIDIHAK+  LDI  +  +              + +   L     L  A
Sbjct: 424 GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           +RL+  MV QGC PNLVT+NIMIAL AKARNY
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 515

[Close]
BLAST of Cp4.1LG18g08100 vs. TAIR10
Match: AT1G18900.3 (AT1G18900.3 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.4e-16
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIPWECMR----GCMRLASLRIHLLT-----VWPLEVA 61
           G +PD VTYCTLIDIHAK+  LDI  +  +    G +   +    ++         L  A
Sbjct: 429 GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           ++L+  MVDQGC PNLVTYNIM+ L AKARNY
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNY 520

[Close]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: gi|659105772|ref|XP_008453170.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIP---WECMRGCMRLA-----SLRIHLL-TVWPLEVA 61
           G EPD VTYCTLIDIHAKS  LD+    +E M+           S+ I+ L     L  A
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAA 503

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 87
           +RL+ RMVDQGCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 HRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEI 537

[Close]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: gi|449440748|ref|XP_004138146.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 2   GSEPDGVTYCTLIDIHAKSSILDIP---WECMRGCMRLA-----SLRIHLL-TVWPLEVA 61
           G EPD VTYCTLIDIHAKS  LD+    +E M+           S+ I+ L     L  A
Sbjct: 444 GCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAA 503

Query: 62  YRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 87
           +RL+ RMVD+GCVPNLVTYNIMIALQAKARNY I
Sbjct: 504 HRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEI 537

[Close]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: gi|950962465|ref|XP_014498102.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Vigna radiata var. radiata])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-15
Identity = 53/95 (55.79%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 449 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYEKMQEVGLSPDTFTYSVMINCLGKSGNLSA 508

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNYYI 87
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY I
Sbjct: 509 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQI 543

[Close]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: gi|571450973|ref|XP_003523047.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like isoform X3 [Glycine max])

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 450 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 509

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 510 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 542

[Close]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match: gi|734315281|gb|KHN01932.1| (Pentatricopeptide repeat-containing protein, partial [Glycine soja])

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-15
Identity = 52/93 (55.91%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 1   MGSEPDGVTYCTLIDIHAKSSILDIP---WECMRGC-----MRLASLRIHLL-TVWPLEV 60
           MG EPD VTYCTLIDIHAK+  LD+    +E M+           S+ I+ L     L  
Sbjct: 464 MGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSA 523

Query: 61  AYRLYYRMVDQGCVPNLVTYNIMIALQAKARNY 85
           A+RL+  MVDQGCVPN+VTYNI+IALQAKARNY
Sbjct: 524 AHRLFCEMVDQGCVPNIVTYNILIALQAKARNY 556

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g08100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP123_ARATH4.5e-1550.00Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN... [more]
PPR49_ARATH1.3e-1447.83Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG18g08100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRL7_CUCSA1.7e-1658.51Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008500 PE=4 SV=1[more]
K7KVW1_SOYBN2.4e-1555.91Uncharacterized protein OS=Glycine max GN=GLYMA_06G189500 PE=4 SV=1[more]
A0A0B2P2M2_GLYSO2.4e-1555.91Pentatricopeptide repeat-containing protein (Fragment) OS=Glycine soja GN=glysoj... [more]
I1KCN8_SOYBN2.4e-1555.91Uncharacterized protein OS=Glycine max GN=GLYMA_06G189500 PE=4 SV=1[more]
I1JWZ7_SOYBN2.4e-1555.91Uncharacterized protein OS=Glycine max GN=GLYMA_04G175400 PE=4 SV=2[more]
BLAST of Cp4.1LG18g08100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74750.12.6e-1650.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G18900.37.4e-1647.83 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG18g08100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105772|ref|XP_008453170.1|1.1e-1659.57PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis melo][more]
gi|449440748|ref|XP_004138146.1|2.4e-1658.51PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis sativu... [more]
gi|950962465|ref|XP_014498102.1|2.0e-1555.79PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Vigna rad... [more]
gi|571450973|ref|XP_003523047.2|3.5e-1555.91PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like isoform X3... [more]
gi|734315281|gb|KHN01932.1|3.5e-1555.91Pentatricopeptide repeat-containing protein, partial [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g08100.1Cp4.1LG18g08100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 49..84
score: 7.6E-27coord: 1..33
score: 7.6
NoneNo IPR availablePANTHERPTHR24015:SF268SUBFAMILY NOT NAMEDcoord: 49..84
score: 7.6E-27coord: 1..33
score: 7.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g08100CmaCh10G001740Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g08100CmoCh10G001870Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g08100MELO3C017149.2Melon (DHL92) v3.6.1cpemedB386
Cp4.1LG18g08100CsaV3_1G002080Cucumber (Chinese Long) v3cpecucB0442
Cp4.1LG18g08100Bhi02G000273Wax gourdcpewgoB0459
Cp4.1LG18g08100CsGy1G002060Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g08100Carg10395Silver-seed gourdcarcpeB0508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g08100Cucurbita pepo (Zucchini)cpecpeB028
Cp4.1LG18g08100Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG18g08100Cucurbita pepo (Zucchini)cpecpeB347
Cp4.1LG18g08100Cucurbita pepo (Zucchini)cpecpeB350
Cp4.1LG18g08100Cucurbita pepo (Zucchini)cpecpeB361
Cp4.1LG18g08100Cucumber (Gy14) v1cgycpeB0202
Cp4.1LG18g08100Cucumber (Gy14) v1cgycpeB0556
Cp4.1LG18g08100Cucurbita maxima (Rimu)cmacpeB127
Cp4.1LG18g08100Cucurbita maxima (Rimu)cmacpeB230
Cp4.1LG18g08100Cucurbita maxima (Rimu)cmacpeB427
Cp4.1LG18g08100Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g08100Cucurbita moschata (Rifu)cmocpeB197
Cp4.1LG18g08100Cucurbita moschata (Rifu)cmocpeB388
Cp4.1LG18g08100Wild cucumber (PI 183967)cpecpiB357
Cp4.1LG18g08100Wild cucumber (PI 183967)cpecpiB361
Cp4.1LG18g08100Cucumber (Chinese Long) v2cpecuB358
Cp4.1LG18g08100Cucumber (Chinese Long) v2cpecuB361
Cp4.1LG18g08100Bottle gourd (USVL1VR-Ls)cpelsiB287
Cp4.1LG18g08100Bottle gourd (USVL1VR-Ls)cpelsiB298
Cp4.1LG18g08100Watermelon (Charleston Gray)cpewcgB319
Cp4.1LG18g08100Watermelon (Charleston Gray)cpewcgB333
Cp4.1LG18g08100Watermelon (Charleston Gray)cpewcgB336
Cp4.1LG18g08100Watermelon (97103) v1cpewmB361
Cp4.1LG18g08100Watermelon (97103) v1cpewmB363
Cp4.1LG18g08100Watermelon (97103) v1cpewmB373
Cp4.1LG18g08100Melon (DHL92) v3.5.1cpemeB323
Cp4.1LG18g08100Melon (DHL92) v3.5.1cpemeB328
Cp4.1LG18g08100Cucumber (Gy14) v2cgybcpeB047
Cp4.1LG18g08100Melon (DHL92) v3.6.1cpemedB376
Cp4.1LG18g08100Melon (DHL92) v3.6.1cpemedB381
Cp4.1LG18g08100Silver-seed gourdcarcpeB0695
Cp4.1LG18g08100Silver-seed gourdcarcpeB0871
Cp4.1LG18g08100Silver-seed gourdcarcpeB1399
Cp4.1LG18g08100Cucumber (Chinese Long) v3cpecucB0435
Cp4.1LG18g08100Cucumber (Chinese Long) v3cpecucB0464
Cp4.1LG18g08100Wax gourdcpewgoB0448