Carg10395 (gene) Silver-seed gourd

Overview
NameCarg10395
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At1g18900
LocationCucurbita_argyrosperma_scaffold_047 : 782909 .. 784144 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCATGAAACTGACGATGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAACTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGTGAGCTTCTTCTCTGACTTTGTGAATTTTAAAGTCCCCTTATCTGACTATGATAGAACATTTAGCTCATTTAAAATTTGCATGGTTGATCTTGCCCGGTCCATTTCTTCTGTGAAACCTTAAAAAATCAAACATCTAAGAAGAGAGAACATTCCTATAGATTTCAAGCCTCAAAGTAGTAGTAACCATCATGGTCCAAATTGCAAGGCTGAGCAATTCAATAATTATGTTAAAGGCTCAAAGTAAGTTCCAGAGGCTAGGATGCGAAAGTCAGTGGTATTTCATAATATTTCCTCAGAAAATTGTGATAAATTAAAGGACTATACCAAAGAGAACAAGAGTTTATTCAAACAGCTTTGGCCATAGGTTCATAGTTCACAAAGTCTTCCAAGAATTTGAAAAAACTTGCCGATAATTTTAAAAGCTCAATAGGATGAAACCAATCGCTCCCTGTTTTTTAGTGCCCCATATGTTATGGAAAGTGTTTTTTGCGTATTGCAACAACTTAAATGGGCCCTGTTTCTGAAGAGGCTCTTGGAAAATTGAACAATTCAATAGATGCATACCAGGCCAACCAAATTCTGAAGTGGGTAGATTACCACTCTGTTGCTCTTGTTGTTGTTGTTGTTTTTTTTTTTTAATTGATTAAAGCGCATGGCTAGGTTTAGACATGATGGACACACTTGTACTAGTATGATTGGCCTCCTTAGTCGTGCCAAACAGTTTGGTGCAATAAATAGACTGCTTTATCAAATGATCAAGGATGGGTATCAGCCCAATGTCGTAACATGTAATTGTATAATTCATTGTTATGGTTGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

mRNA sequence

ATGTCTCATGAAACTGACGATGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAACTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

Coding sequence (CDS)

ATGTCTCATGAAACTGACGATGTTGATCTCTCAGTTTCCATACAACAAGTTACAAACACCGGCCCCAATCTCCAGAGGGGAACAAAATGTGTAAGGTATGCCAGTAGCCTTAACTCTGTTTTGGATGATGAGTGCATTTCACCAAATATTGACACTCAGATTGTTAAGATGGGTACTATGGTTGAAGCAGGGAGTGAACCTGATGGAGTCACCTACTGCACGCTCATTGACATTCATTCTAAATCTAGCATTCTTGATATTCCATGGGAATGTATGAGAGGATGCAAGAGGCTGGCCTCACTCCGGATACATTTACTTACAGTGTTAACGATCAACTGCTTGGGGAAGCTGGCCATTAGAAGTTGCATATAG

Protein sequence

MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMGTMVEAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRSCI
Homology
[Close]
BLAST of Carg10395 vs. NCBI nr
Match: XP_022921918.1 (pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata])

HSP 1 Score: 130.2 bits (326), Expect = 4.9e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 62  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS 121
           EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS
Sbjct: 29  EAGSEPDGVTYCTLIDIHSKSSILDIPWECMRGCKRLASLRIHLLTVLTINCLGKLAIRS 88

Query: 122 CI 124
           CI
Sbjct: 89  CI 90

[Close]
BLAST of Carg10395 vs. NCBI nr
Match: XP_008453170.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 1   MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMGTM 60
           +SH+TD+VDLSVSI+QVTNTGPN QRG +CVRY+S LN+VLD EC SP I  Q+VK G M
Sbjct: 80  VSHKTDNVDLSVSIRQVTNTGPNHQRGAECVRYSSGLNTVLDGECSSPRIADQVVKAGIM 139

[Close]
BLAST of Carg10395 vs. NCBI nr
Match: XP_004138146.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis sativus] >KGN63644.1 hypothetical protein Csa_1G008500 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1   MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMGTM 60
           +SH+TD+VDLSVSI+QV NTGPN QRG +CVRYAS LN+VLD EC SP I  Q+VK G M
Sbjct: 80  VSHKTDNVDLSVSIRQVANTGPNHQRGAECVRYASGLNTVLDGECTSPRIADQVVKAGIM 139

[Close]
BLAST of Carg10395 vs. NCBI nr
Match: XP_022135050.1 (pentatricopeptide repeat-containing protein At1g18900 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1   MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMG 59
           +SH+TD VDLS++++ VTNTGP+ QRG +CVRYAS LN+VLDDEC SP I  Q VK G
Sbjct: 83  VSHKTDKVDLSIAVRPVTNTGPSPQRGPECVRYASGLNTVLDDECTSPKIADQFVKAG 140

[Close]
BLAST of Carg10395 vs. TrEMBL
Match: tr|A0A1S3BVJ8|A0A1S3BVJ8_CUCME (pentatricopeptide repeat-containing protein At1g18900 OS=Cucumis melo OX=3656 GN=LOC103493965 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 1   MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMGTM 60
           +SH+TD+VDLSVSI+QVTNTGPN QRG +CVRY+S LN+VLD EC SP I  Q+VK G M
Sbjct: 80  VSHKTDNVDLSVSIRQVTNTGPNHQRGAECVRYSSGLNTVLDGECSSPRIADQVVKAGIM 139

[Close]
BLAST of Carg10395 vs. TrEMBL
Match: tr|A0A0A0LRL7|A0A0A0LRL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008500 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1   MSHETDDVDLSVSIQQVTNTGPNLQRGTKCVRYASSLNSVLDDECISPNIDTQIVKMGTM 60
           +SH+TD+VDLSVSI+QV NTGPN QRG +CVRYAS LN+VLD EC SP I  Q+VK G M
Sbjct: 80  VSHKTDNVDLSVSIRQVANTGPNHQRGAECVRYASGLNTVLDGECTSPRIADQVVKAGIM 139

The following BLAST results are available for this feature:
BLAST of Carg10395 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921918.14.9e-27100.00pentatricopeptide repeat-containing protein At1g74750-like [Cucurbita moschata][more]
XP_008453170.11.2e-1470.00PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis melo][more]
XP_004138146.11.6e-1470.00PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Cucumis sativu... [more]
XP_022135050.16.8e-1365.52pentatricopeptide repeat-containing protein At1g18900 [Momordica charantia][more]
BLAST of Carg10395 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg10395 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg10395 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BVJ8|A0A1S3BVJ8_CUCME8.2e-1570.00pentatricopeptide repeat-containing protein At1g18900 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LRL7|A0A0A0LRL7_CUCSA1.1e-1470.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10395-RACarg10395-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10395MELO3C017149Melon (DHL92) v3.5.1carmeB0369
Carg10395CmaCh10G001740Cucurbita maxima (Rimu)carcmaB0510
Carg10395CmoCh10G001870Cucurbita moschata (Rifu)carcmoB0493
Carg10395Cp4.1LG18g08100Cucurbita pepo (Zucchini)carcpeB0508
Carg10395Bhi02G000273Wax gourdcarwgoB0449
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg10395Silver-seed gourdcarcarB389
Carg10395Silver-seed gourdcarcarB392
Carg10395Silver-seed gourdcarcarB393
Carg10395Silver-seed gourdcarcarB394
Carg10395Cucumber (Gy14) v2carcgybB0371
Carg10395Cucumber (Gy14) v2carcgybB0372
Carg10395Cucumber (Gy14) v1carcgyB0421
Carg10395Cucumber (Gy14) v1carcgyB0423
Carg10395Cucurbita maxima (Rimu)carcmaB0512
Carg10395Cucurbita maxima (Rimu)carcmaB0514
Carg10395Cucurbita maxima (Rimu)carcmaB0517
Carg10395Cucurbita moschata (Rifu)carcmoB0494
Carg10395Cucurbita moschata (Rifu)carcmoB0496
Carg10395Cucurbita moschata (Rifu)carcmoB0499
Carg10395Cucurbita moschata (Rifu)carcmoB0501
Carg10395Cucurbita pepo (Zucchini)carcpeB0506
Carg10395Cucurbita pepo (Zucchini)carcpeB0509
Carg10395Cucurbita pepo (Zucchini)carcpeB0511
Carg10395Cucurbita pepo (Zucchini)carcpeB0512
Carg10395Cucurbita pepo (Zucchini)carcpeB0514
Carg10395Wild cucumber (PI 183967)carcpiB0396
Carg10395Wild cucumber (PI 183967)carcpiB0397
Carg10395Cucumber (Chinese Long) v2carcuB0391
Carg10395Cucumber (Chinese Long) v2carcuB0392
Carg10395Cucumber (Chinese Long) v3carcucB0395
Carg10395Cucumber (Chinese Long) v3carcucB0396
Carg10395Bottle gourd (USVL1VR-Ls)carlsiB329
Carg10395Bottle gourd (USVL1VR-Ls)carlsiB331
Carg10395Melon (DHL92) v3.5.1carmeB0365
Carg10395Melon (DHL92) v3.6.1carmedB0371
Carg10395Melon (DHL92) v3.6.1carmedB0375
Carg10395Watermelon (Charleston Gray)carwcgB0354
Carg10395Watermelon (Charleston Gray)carwcgB0357
Carg10395Watermelon (97103) v1carwmB0355
Carg10395Watermelon (97103) v1carwmB0356
Carg10395Watermelon (97103) v2carwmbB0378
Carg10395Watermelon (97103) v2carwmbB0380
Carg10395Watermelon (97103) v2carwmbB0382
Carg10395Wax gourdcarwgoB0446