Cp4.1LG18g07660 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g07660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	UPF0139 membrane protein
Location	Cp4.1LG18 : 7316744 .. 7319047 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATTCAGTTTGGTATAAGCTTAAGAACCGGATTCACCAAAGCAATCGTATCCAGCGAGTGGAAGAGGCTGAGTCGTCCAGACTCGAGAGTCAGTCAAGCGATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGCCAGTGAATCCGCAAGATCTGCCAGTCGATTATTCCGGTTTCATTGCCGTAGTTTTCGGCATCGCAGGTGTCATGTTCAGGGTAATTCTGCTTATTTTCGAGCACTGATACGGTAGCTATGGCGATCTTACTTTTTACTCATGTGACTCTCTTGGTTTTGGTTGAAATTGGGCAGTACAAGCTTAGTTCGTGGTTGGCCATCATATTTTGTGCCCAATCGCTTGCGAATATGAGGAATATTGAGAATGATCTCAAGCAGATTTCCATGGCCATGATGTGAGTTTTCTTCCCCTCCCGATCTATATTTTCTGTTAGTTCATATGTATTATTTGTTAAATTTGGGTTGGTCTGAGATCTGAACATTCTAAATTCAGCCTTAGGTGGCCTTTTCCGCGCTTTGTAAATGCAACAATTAATATTTATTAGCTAGGGGATCGAACCAACATCCAAGAATATATAAGTTGAAGTAAGGATAGAAGAGATAGTATTTACAGTCTTTTACACTAGCAATATTGTTTTGTGATCTTTCTGATTCAGAAATGATTGCGTCCTCAACACTTGAGATTTAGGAACCTTGAATCTTAGTTACGGACTGGCATCTATCATTGTAGTTTTAGTTTACCTCATGTCAGCCTCAAAACGTTGTGTGCAAACAATGAACATTCTCCCTTGGCAAATTTCCATTGCCATTTTTATTTTTCCTTTGTATTCTTGCTTCTTATCCTTTCATTTATGCATGGATTTAGAGTCATAGATCATGTGACTTGTAAATTTTAATTAATCATCATAAAAATTACCTTTCTTGCGAACAGGAACCAGAGAATTGAAATAAGATTTGGATTAAGAACTTGCAAAATAAGAAATTGTTGTAAATTATCTCAAAGTAATCTGAGGAACTTGAACACCTCTCTCAAGCAAACTCAAGTTTAGATAACTACATAAATGTTGCCTTCACCTGCTTCCCATTCACTCTATTTATAACCACCTCTCATTAGCAAACTCCTTAGCTGATGATATCAATCTGTCCTTGGATCCTAATAACATTTCTAATATCTACCCTGTTTGTACTCCTGACGGTTACTTGGGAAAGAAAAATACAGCAGAGACTTAGTTATGAGTGTGTAATGAGAGTGCCATCTATTGGTTGTTCTTCCGTTGATTCAAAATGCCGTCCAACCTGAGTTGGGGTGAGTTGTGGCATGACGACTAAAATGCGCACGAGGTCAACTGACCTGTGAAACTGCATCTCTTAGTTTCTCCCTTTGATGATGGGTTAAGAACTTTAAGACAAATGACAGAGGGTAGCATGATTGTCTGTAATGTTAACTAATAGTTTGAGGACAATCAGGGCGGAATACAAAACTATAGAGGGTAGGTGATGTTCATAAAATTTTCTTCGGTAAAACTCAGTCTAGGCAGGTCATCTTGGGCTTTCAAATTGGTTTTCAAGTTTAAGCAGATCATCTTGAGTCACAACTAGCTTGAGTGATTTTTCTGTTAACATAGTCAACATTTTACTATGATTCATTAGCATCGGTTTATATCCATTTGTGGTTTTAACTCATCTTTGGTCTCAAATCCAGGTTTGCTATCATGGGATTAGTAACCAATTACTTGAGTCCTACGCGACCAGGAACGAAGAGTTAGACTCCTCGCTTAGAATGTTCACGACGTTTTTTCCTTTTTTTCTTTTACGTAATTTACTTTAGGAGCTTTTTAGGGTTGGTGACTGTTTTTATATTATGATGGAGAACGAACATAGGGACCAACTATATGTTTTTTTTAATTAATATCGGGTCAGTTTGCGTGCACCTTGACTATTTGATAAGTGATGTCGTAGTATCTAGATGAGCTTACTCCTCCCATCAAGAAGATACCCAGTGTGGAGCCAAGTGAGATGCCACATTTTTCTTTAGCATTCATATTAACTCGAATCCCAAACGGGTGTTCAAAAGATTTAATGATTCAAAATTTTTCGTATGGAGGGGGGGAGTGGGTTATCTAAGCTCGAGGTTGGTTTTGGTTAGATTTGTTTAGTTGATTTATGAGGTTGGAACTTGGATGATTTAATTCGAATTTATTATGAATTCAAAAGTATTGTTATGGAAGAATTACTTATAATATGTGTGACTCCTCTCAGCC

mRNA sequence

TGAATTCAGTTTGGTATAAGCTTAAGAACCGGATTCACCAAAGCAATCGTATCCAGCGAGTGGAAGAGGCTGAGTCGTCCAGACTCGAGAGTCAGTCAAGCGATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGCCAGTGAATCCGCAAGATCTGCCAGTCGATTATTCCGGTTTCATTGCCGTAGTTTTCGGCATCGCAGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGTTGGCCATCATATTTTGTGCCCAATCGCTTGCGAATATGAGGAATATTGAGAATGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCTATCATGGGATTAGTAACCAATTACTTGAGTCCTACGCGACCAGGAACGAAGAGTTAGACTCCTCGCTTAGAATGTTCACGACGTTTTTTCCTTTTTTTCTTTTACGTAATTTACTTTAGGAGCTTTTTAGGGTTGGTGACTGTTTTTATATTATGATGGAGAACGAACATAGGGACCAACTATATGTTTTTTTTAATTAATATCGGGTCAGTTTGCGTGCACCTTGACTATTTGATAAGTGATGTCGTAGTATCTAGATGAGCTTACTCCTCCCATCAAGAAGATACCCAGTGTGGAGCCAAGTGAGATGCCACATTTTTCTTTAGCATTCATATTAACTCGAATCCCAAACGGGTGTTCAAAAGATTTAATGATTCAAAATTTTTCGTATGGAGGGGGGGAGTGGGTTATCTAAGCTCGAGGTTGGTTTTGGTTAGATTTGTTTAGTTGATTTATGAGGTTGGAACTTGGATGATTTAATTCGAATTTATTATGAATTCAAAAGTATTGTTATGGAAGAATTACTTATAATATGTGTGACTCCTCTCAGCC

Coding sequence (CDS)

ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTTCTCCGCCAGTGAATCCGCAAGATCTGCCAGTCGATTATTCCGGTTTCATTGCCGTAGTTTTCGGCATCGCAGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGTTGGCCATCATATTTTGTGCCCAATCGCTTGCGAATATGAGGAATATTGAGAATGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCTATCATGGGATTAGTAACCAATTACTTGAGTCCTACGCGACCAGGAACGAAGAGTTAG

Protein sequence

MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS

Homology

[Close]

BLAST of Cp4.1LG18g07660 vs. Swiss-Prot
Match: ASTER_ARATH (Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-40
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ++  NDPRQPSAAKP++  PV P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8   ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTK 101
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYL P RP TK
Sbjct: 68  SLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

[Close]

BLAST of Cp4.1LG18g07660 vs. TrEMBL
Match: A0A0A0LSF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013160 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.8e-46
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1


Query: 1   MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
           MSTQANDPRQPSA KPFV+P VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSP RPG KS
Sbjct: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPARPGAKS 101

[Close]

BLAST of Cp4.1LG18g07660 vs. TrEMBL
Match: A0A061FWX0_THECC (UPF0139 membrane protein OS=Theobroma cacao GN=TCM_014213 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.2e-43
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           S   NDPRQPSAAKPFV+ PV+PQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ
Sbjct: 8   SASVNDPRQPSAAKPFVAQPVSPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYL P RPGT+S
Sbjct: 68  SLANMRNVENDLKQISMAMMFAIMGLVTNYLGPARPGTQS 107

[Close]

BLAST of Cp4.1LG18g07660 vs. TrEMBL
Match: A0A0D2U6A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G197900 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.5e-42
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ST ANDPRQPSAAKP+V+ PV+PQDLPVDYSGFIAV+FGIAGVMFRYKLSSWLAIIFCAQ
Sbjct: 8   STSANDPRQPSAAKPYVAQPVSPQDLPVDYSGFIAVIFGIAGVMFRYKLSSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SLANM+N+ENDLKQISMAMMFAIMGLVTNY  P RPG +S
Sbjct: 68  SLANMKNVENDLKQISMAMMFAIMGLVTNYFGPARPGKQS 107

[Close]

BLAST of Cp4.1LG18g07660 vs. TrEMBL
Match: A0A0B0N7V1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11369 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.5e-42
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ST ANDPRQPSAAKP+V+ PV+PQDLPVDYSGFIAV+FGIAGVMFRYKLSSWLAIIFCAQ
Sbjct: 8   STSANDPRQPSAAKPYVAQPVSPQDLPVDYSGFIAVIFGIAGVMFRYKLSSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SLANM+N+ENDLKQISMAMMFAIMGLVTNY  P RPG +S
Sbjct: 68  SLANMKNVENDLKQISMAMMFAIMGLVTNYFGPARPGKQS 107

[Close]

BLAST of Cp4.1LG18g07660 vs. TrEMBL
Match: A0A059A6C9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02517 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.6e-39
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ++  NDPRQPSAAKPF  P V+PQDLPVDYSGFIAVVFG+AGVMFRYKLSSW+AIIFCAQ
Sbjct: 6   NSATNDPRQPSAAKPFKPPLVSPQDLPVDYSGFIAVVFGVAGVMFRYKLSSWIAIIFCAQ 65

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRP 98
           SLANMRN+ENDLKQISMAMMFAIMGLVTNY  PTRP
Sbjct: 66  SLANMRNMENDLKQISMAMMFAIMGLVTNYFGPTRP 101

[Close]

BLAST of Cp4.1LG18g07660 vs. TAIR10
Match: AT5G07960.1 (AT5G07960.1 unknown protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-41
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ++  NDPRQPSAAKP++  PV P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8   ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTK 101
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYL P RP TK
Sbjct: 68  SLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

[Close]

BLAST of Cp4.1LG18g07660 vs. NCBI nr
Match: gi|659106136|ref|XP_008453260.1| (PREDICTED: protein Asterix [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 1


Query: 1   MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
           MSTQANDPRQPSA KPFV+P VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           QSLANMRN+ENDLKQISMAMMFAIMGLVTNYLSP RPGTKS
Sbjct: 61  QSLANMRNVENDLKQISMAMMFAIMGLVTNYLSPARPGTKS 101

[Close]

BLAST of Cp4.1LG18g07660 vs. NCBI nr
Match: gi|449440838|ref|XP_004138191.1| (PREDICTED: protein Asterix [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.8e-46
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1


Query: 1   MSTQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60
           MSTQANDPRQPSA KPFV+P VNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA
Sbjct: 1   MSTQANDPRQPSAVKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCA 60

Query: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSP RPG KS
Sbjct: 61  QSLANMRNIENDLKQISMAMMFAIMGLVTNYLSPARPGAKS 101

[Close]

BLAST of Cp4.1LG18g07660 vs. NCBI nr
Match: gi|590668581|ref|XP_007037534.1| (UPF0139 membrane protein [Theobroma cacao])

HSP 1 Score: 181.8 bits (460), Expect = 6.0e-43
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           S   NDPRQPSAAKPFV+ PV+PQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ
Sbjct: 8   SASVNDPRQPSAAKPFVAQPVSPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYL P RPGT+S
Sbjct: 68  SLANMRNVENDLKQISMAMMFAIMGLVTNYLGPARPGTQS 107

[Close]

BLAST of Cp4.1LG18g07660 vs. NCBI nr
Match: gi|823212198|ref|XP_012438853.1| (PREDICTED: protein Asterix [Gossypium raimondii])

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-42
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ST ANDPRQPSAAKP+V+ PV+PQDLPVDYSGFIAV+FGIAGVMFRYKLSSWLAIIFCAQ
Sbjct: 8   STSANDPRQPSAAKPYVAQPVSPQDLPVDYSGFIAVIFGIAGVMFRYKLSSWLAIIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SLANM+N+ENDLKQISMAMMFAIMGLVTNY  P RPG +S
Sbjct: 68  SLANMKNVENDLKQISMAMMFAIMGLVTNYFGPARPGKQS 107

[Close]

BLAST of Cp4.1LG18g07660 vs. NCBI nr
Match: gi|743926263|ref|XP_011007289.1| (PREDICTED: protein Asterix [Populus euphratica])

HSP 1 Score: 171.4 bits (433), Expect = 8.1e-40
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 2   STQANDPRQPSAAKPFVSPPVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           S  ANDPRQPSAAKPFV+P V+PQDLPVDYSGFIAV+ G+AGVMFRYKL SWLA+IFCAQ
Sbjct: 8   SASANDPRQPSAAKPFVAPMVSPQDLPVDYSGFIAVILGVAGVMFRYKLCSWLALIFCAQ 67

Query: 62  SLANMRNIENDLKQISMAMMFAIMGLVTNYLSPTRPGTKS 102
           SL+NMRN+ENDLKQISMA MFAIMGLVTNYL P RPG++S
Sbjct: 68  SLSNMRNMENDLKQISMASMFAIMGLVTNYLGPARPGSQS 107

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g07660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ASTER_ARATH	2.1e-40	79.80	Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=3 SV=1	[more]

BLAST of Cp4.1LG18g07660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSF0_CUCSA	6.8e-46	95.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013160 PE=4 SV=1	[more]
A0A061FWX0_THECC	4.2e-43	90.00	UPF0139 membrane protein OS=Theobroma cacao GN=TCM_014213 PE=4 SV=1	[more]
A0A0D2U6A2_GOSRA	3.5e-42	87.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G197900 PE=4 SV=1	[more]
A0A0B0N7V1_GOSAR	3.5e-42	87.00	Uncharacterized protein OS=Gossypium arboreum GN=F383_11369 PE=4 SV=1	[more]
A0A059A6C9_EUCGR	3.6e-39	86.46	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02517 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g07660 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07960.1	1.2e-41	79.80	unknown protein	[more]

BLAST of Cp4.1LG18g07660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659106136\|ref\|XP_008453260.1\|	3.4e-46	95.05	PREDICTED: protein Asterix [Cucumis melo]	[more]
gi\|449440838\|ref\|XP_004138191.1\|	9.8e-46	95.05	PREDICTED: protein Asterix [Cucumis sativus]	[more]
gi\|590668581\|ref\|XP_007037534.1\|	6.0e-43	90.00	UPF0139 membrane protein [Theobroma cacao]	[more]
gi\|823212198\|ref\|XP_012438853.1\|	5.0e-42	87.00	PREDICTED: protein Asterix [Gossypium raimondii]	[more]
gi\|743926263\|ref\|XP_011007289.1\|	8.1e-40	83.00	PREDICTED: protein Asterix [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005351	UPF0139

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g07660.1	Cp4.1LG18g07660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005351	Uncharacterised protein family UPF0139	PRODOM	PD073147		coord: 6..81 score: 2.0
IPR005351	Uncharacterised protein family UPF0139	PANTHER	PTHR13193	CGI-140	coord: 2..99 score: 1.3
IPR005351	Uncharacterised protein family UPF0139	PFAM	PF03669	UPF0139	coord: 5..98 score: 1.2
None	No IPR available	PANTHER	PTHR13193:SF0	PROTEIN ASTERIX	coord: 2..99 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g07660	Cucsa.198150	Cucumber (Gy14) v1	cgycpeB0556
Cp4.1LG18g07660	CmaCh10G002280	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g07660	CmaCh11G001960	Cucurbita maxima (Rimu)	cmacpeB135
Cp4.1LG18g07660	CmoCh10G002400	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g07660	CmoCh11G002030	Cucurbita moschata (Rifu)	cmocpeB109
Cp4.1LG18g07660	Cla019067	Watermelon (97103) v1	cpewmB373
Cp4.1LG18g07660	Csa1G013160	Cucumber (Chinese Long) v2	cpecuB361
Cp4.1LG18g07660	MELO3C017217	Melon (DHL92) v3.5.1	cpemeB328
Cp4.1LG18g07660	ClCG06G015720	Watermelon (Charleston Gray)	cpewcgB336
Cp4.1LG18g07660	CSPI01G02770	Wild cucumber (PI 183967)	cpecpiB361
Cp4.1LG18g07660	MELO3C017217.2	Melon (DHL92) v3.6.1	cpemedB386
Cp4.1LG18g07660	CsaV3_1G002810	Cucumber (Chinese Long) v3	cpecucB0442
Cp4.1LG18g07660	CsGy1G002790	Cucumber (Gy14) v2	cgybcpeB053
Cp4.1LG18g07660	Carg17930	Silver-seed gourd	carcpeB0646

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g07660	Cp4.1LG04g14740	Cucurbita pepo (Zucchini)	cpecpeB361

The following block(s) are covering this gene:

None