Cp4.1LG18g05590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g05590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEukaryotic translation initiation factor 5A
LocationCp4.1LG18 : 6172488 .. 6176319 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAAAAAAAAAAACAAAGGCTTTCGATTTTCTTTTTTTTTTTTTTTAATTAAAAATAATTTATATGATATGCTTTTATTCTCTTTCGCGCGCTTTCTTGTTACGGGGGAAAAAAGCAGTTAGAAACGGCGATGCGAAAGCGGGAGGGACTTAATCCAACGGCCACGATTTCATCTCTTTCAATTCGGGATTTGTGTCTCTGAAGAGCCGGGAATATTAGAGCCGATTACTTCGTCTGAGAGAAAGTGAGAAAAAAAAGGGGTCTGAAATCGAAGCAGCGATGTCGGACTAGGAGCACCACTTTGACTCTAAGGCCAACGCCGGAGCGTCGCCTCAGGAAGCTTGAACCATTCGCAGAAATGGCTACATCGTAATCAATAACAGACCCTGCAAGGTTTCCTTCTTTCTTTTTTTTTTCTCTGTAACTTTTCGGAGATTGACTTTGATCTTCTTCCATGGAGTAAATTTTGGGGGTTTGTGCTATTTTTTTAAGCTTCTCGTCTAGATTCTTTGTTATAATTTTTCCTTGGCTCTTTGTAAGGGCAGACGTTTGATTGATTGTTGTTTCTGTACTTCTATTTCCTAGTGCAGATTGTCCCCTGAATTTTTGCTCGGTGACCACTGATTATGGAAATTCTTACTGTTGTTTAGGGTCTCCCTGATTGATTTAGGTTTCCCCTTTAATTTCTCTTGTTTCGCAACGTTGATGAAACCAGGGCCGTTTAGTTACGTATTATGTGTTATCCCACAGTAACAATTGCAGGGGGAATAAATTTCGAAGAGGTTGTGCAAAATTTGGCATAATCGGTTTATTGTTTTTAATGGCAAGTATTTCTTTCACCCTAATTGGATGCGTAATATGATTTGTCGCCTTGGTTTGTCAAAAATGCATATGGACTTGGCTTATTGACTTATTGAGTTTTGCTATGGGACATGCCGTCGAACAGTTCAACAGGAACATACGGGCCATATACTGTCCCCTGTTGTGTGTTGTACAGTGCAAACAATGAGGTAGATGCCAGGCTAAATGTTAATAGTGTTTAAAAACCACGAAATTGAAACTATCCACTTTGAGCATAAGCTCTCGTGACTCTATTTTTGGTTTTGGAGGTATTATCCACTTTGAGCAATACCTCTCGTGACTCTATTTTTGGTTTTTCCAAAATGGCTCCTATCAATGGAGATGTATTCCTTACTTATAAATCCATAATCAACCTCTTAATTAGCCCACGTGGGACTCCTCTCCCAACAATCCTCCTATTGAACAAAGTACACCAGAGAGCCTCCCCTGAGACCTATGGAGCCCTTGAACAACCTCCCCTTAATAGAGGCTCGACTTCTTCTCTAGAGCCCTTGAACAAAGGGCACCCTTTGTTCAACTCTTGAGTCACTTTTGACTACCAAGAAGTAGTTTTCACAGCTCCTTATAGATTTGACGAGACTTTGAAACACTGAAATCAACTGAAACACATTGAAGAGACCTAAAAGTCAACTTCAGCCTACAACACAGAGTTGTAAAGAGTCGGTTGATAGAGATGTCAACCAGTTAAGTGGGAGAGGATGTCACGGTCATGCTTGTCCAAGGCATGTTACCTATGGCAGCATGACAGATGTTCCAGTCTTGCTTGTCTAAGTCGGTTGATAGGGAGGATGTCACGGTCATGCTTGTCTTGCTTGTTTAAGTCAGTTGACAGGTCTTTGTTCAACTCTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTGTTGACATGACTAGATTAAGGGTGTGGTTCTGATACCATGTTAAAAACCACAAACTTCTACAATAGTATGATATTGTCCACTTTGAACATAAGCTTTCATGACTTTGTTTTTTATTTCCCTAAAAGGACTCATACCAATGGAGATGTATTTCTTACCCATAAACCTATGATCAACTCCTTAATTAGCCGATGTGGGACTCCTCTCCCAACAATCGTGGATATAATCTTCATGCTGCATTTGTCTTCTTGGTTAACAAAACGTCTTTGAAGCATTAACAATTGCCACAAGGTTTTGAAGTAGAAACTTCAACGACCTGAAATGAAGGGAGATAGAAAAAAGTGATGATATATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTAATTTCTTTGTCACTCTCTTCTTGTGTTCTACTCTCTAAGTACTAATTTTATTCTACTAACAAACGTTGCTTGTATTCCTTGCAGGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTAAGTTTCAATTATATTGAAACATGATATTGCTTTATATACGAAGCTTAGATCAATGTCTTTTGCTTCAATTGAGATTTGAGAAATATCCCCGTTCACCCCCTCCCAAGAGAGAGAAGCTCCCTGTTATAAGTTCATAACAAAAGTGTGAGACCCCGCATGAGATAGCATCAGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGTTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGAAAAGTCTAAAGAGGACAATATCTATTAGTGGTGGGCTTGGGCCGTTACAAATAGTATCAAAGCCAGTCACCGGACGGTATGCTAGCAAGGACGTTGGCCCCCAAGGGAAGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGGAACCTCTCCCTAGCAGATGCGTTTTAAAAACTTTGAGGAGAAGCTCGAAAGGAAAAGCCCAAAAAGGACAATATCTGCTAGTGGTGAGCTTGGGCCGTTAGTTCGATTGGAAGGAGTTTTGCAATCTTAATCTATAGCACGAGGATCTTGAGTCGAGACCTATTGACTTGGTAATTTTGCAGGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGATTATACCATTACATTTACAAACCTTCAAGCCATTGCTTTATAGCTTTCTGCAGCACCATCTCTGTTCCATTTATTTTCATGCCAATAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGATGGCTCAGAATCACCCCAACCAAAAGTTCTATCAAGTATGTTTATATGTCATAAAACCATATTCTCAGCAAGGTACTTCAAGCTATTGATCCTTGCACACTGCTGAAAGGATACATACATGTTTTACTTTATATAGTACACTACTTATAAAATGTATAACCCCCCCTGTTTTCTAAGAAGCCCTTTGAATAAGATCTTGGATTCTAGTAGGAAGATAAACAAACAGGTTTTCTGGTCTTTTGGTCTCTTTCTTCTTTTGTCTAGAGGTTGTTATTAAGGTCATTGAAGCTCATCACCATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGAATGACTGTAATTATTGTCATAAAGGCAAACAACACATAGTAATTGGATGCATGTCACTGACAAGCTGCTGAACCACACAATTCTTTATACTTCACTCCTAATCTCAAGCATCAAATAGTCAATCTTATCATCATATGACATGTTGCTATATGATTGGCACTACTATGATAGTGAGACTCGTCTTGTCCCAAGGCTCT

mRNA sequence

ATTAAAAAAAAAAAAACAAAGGCTTTCGATTTTCTTTTTTTTTTTTTTTAATTAAAAATAATTTATATGATATGCTTTTATTCTCTTTCGCGCGCTTTCTTGTTACGGGGGAAAAAAGCAGTTAGAAACGGCGATGCGAAAGCGGGAGGGACTTAATCCAACGGCCACGATTTCATCTCTTTCAATTCGGGATTTGTGTCTCTGAAGAGCCGGGAATATTAGAGCCGATTACTTCGTCTGAGAGAAAGTGAGAAAAAAAAGGGGTCTGAAATCGAAGCAGCGATGTCGGACTAGGAGCACCACTTTGACTCTAAGGCCAACGCCGGAGCGTCGCCTCAGGAAGCTTGAACCATTCGCAGAAATGGCTACATCGTAATCAATAACAGACCCTGCAAGGTTTCCTTCTTTCTTTTTTTTTTCTCTGTAACTTTTCGGAGATTGACTTTGATCTTCTTCCATGGAGTAAATTTTGGGGGTTTGTGCTATTTTTTTAAGCTTCTCGTCTAGATTCTTTGTTATAATTTTTCCTTGGCTCTTTGTAAGGGCAGACGTTTGATTGATTGTTGTTTCTGTACTTCTATTTCCTAGTGCAGATTGTCCCCTGAATTTTTGCTCGGTGACCACTGATTATGGAAATTCTTACTGTTGTTTAGGGTCTCCCTGATTGATTTAGGTTTCCCCTTTAATTTCTCTTGTTTCGCAACGTTGATGAAACCAGGGCCGTTTAGTTACGTATTATGTGTTATCCCACAGTAACAATTGCAGGGGGAATAAATTTCGAAGAGGTTGTGCAAAATTTGGCATAATCGGTTTATTGTTTTTAATGGCAAGTATTTCTTTCACCCTAATTGGATGCGTAATATGATTTGTCGCCTTGGTTTGTCAAAAATGCATATGGACTTGGCTTATTGACTTATTGAGTTTTGCTATGGGACATGCCGTCGAACAGTTCAACAGGAACATACGGGCCATATACTGTCCCCTGTTGTGTGTTGTACAGTGCAAACAATGAGGTAGATGCCAGGCTAAATGTTAATAGTGTTTAAAAACCACGAAATTGAAACTATCCACTTTGAGCATAAGCTCTCGTGACTCTATTTTTGGTTTTGGAGGTATTATCCACTTTGAGCAATACCTCTCGTGACTCTATTTTTGGTTTTTCCAAAATGGCTCCTATCAATGGAGATGTATTCCTTACTTATAAATCCATAATCAACCTCTTAATTAGCCCACGTGGGACTCCTCTCCCAACAATCCTCCTATTGAACAAAGTACACCAGAGAGCCTCCCCTGAGACCTATGGAGCCCTTGAACAACCTCCCCTTAATAGAGGCTCGACTTCTTCTCTAGAGCCCTTGAACAAAGGGCACCCTTTGTTCAACTCTTGAGTCACTTTTGACTACCAAGAAGTAGTTTTCACAGCTCCTTATAGATTTGACGAGACTTTGAAACACTGAAATCAACTGAAACACATTGAAGAGACCTAAAAGTCAACTTCAGCCTACAACACAGAGTTGTAAAGAGTCGGTTGATAGAGATGTCAACCAGTTAAGTGGGAGAGGATGTCACGGTCATGCTTGTCCAAGGCATGTTACCTATGGCAGCATGACAGATGTTCCAGTCTTGCTTGTCTAAGTCGGTTGATAGGGAGGATGTCACGGTCATGCTTGTCTTGCTTGTTTAAGTCAGTTGACAGGTCTTTGTTCAACTCTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTGTTGACATGACTAGATTAAGGGTGTGGTTCTGATACCATGTTAAAAACCACAAACTTCTACAATAGTATGATATTGTCCACTTTGAACATAAGCTTTCATGACTTTGTTTTTTATTTCCCTAAAAGGACTCATACCAATGGAGATGTATTTCTTACCCATAAACCTATGATCAACTCCTTAATTAGCCGATGTGGGACTCCTCTCCCAACAATCGTGGATATAATCTTCATGCTGCATTTGTCTTCTTGGTTAACAAAACGTCTTTGAAGCATTAACAATTGCCACAAGGTTTTGAAGTAGAAACTTCAACGACCTGAAATGAAGGGAGATAGAAAAAAGTGATGATATATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGATTATACCATTACATTTACAAACCTTCAAGCCATTGCTTTATAGCTTTCTGCAGCACCATCTCTGTTCCATTTATTTTCATGCCAATAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGATGGCTCAGAATCACCCCAACCAAAAGTTCTATCAAGTATGTTTATATGTCATAAAACCATATTCTCAGCAAGGTACTTCAAGCTATTGATCCTTGCACACTGCTGAAAGGATACATACATGTTTTACTTTATATAGTACACTACTTATAAAATGTATAACCCCCCCTGTTTTCTAAGAAGCCCTTTGAATAAGATCTTGGATTCTAGTAGGAAGATAAACAAACAGGTTTTCTGGTCTTTTGGTCTCTTTCTTCTTTTGTCTAGAGGTTGTTATTAAGGTCATTGAAGCTCATCACCATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGAATGACTGTAATTATTGTCATAAAGGCAAACAACACATAGTAATTGGATGCATGTCACTGACAAGCTGCTGAACCACACAATTCTTTATACTTCACTCCTAATCTCAAGCATCAAATAGTCAATCTTATCATCATATGACATGTTGCTATATGATTGGCACTACTATGATAGTGAGACTCGTCTTGTCCCAAGGCTCT

Coding sequence (CDS)

ATGGCAGCCAAAATATGGCACTTTGTGGCAATTGACATATTCAATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATACGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGA

Protein sequence

MAAKIWHFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLPKDENLRRQVHK
Homology
[Close]
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-20
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E+GN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL +QV
Sbjct: 119 TDENLLKQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-20
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E+GN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DE+L +QV
Sbjct: 119 TDESLLKQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF GK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+NL  Q+
Sbjct: 119 TDDNLLTQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-19
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+ L  QV
Sbjct: 119 TDDALLNQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-19
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E GN KD LRLP
Sbjct: 59  HFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  Q+
Sbjct: 119 TDENLLSQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match: A0A067H670_CITSI (Eukaryotic translation initiation factor 5A OS=Citrus sinensis GN=CISIN_1g031432mg PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-18
Identity = 50/69 (72.46%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  QV
Sbjct: 119 TDENLLSQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match: A0A059WQB8_QUESU (Eukaryotic translation initiation factor 5A OS=Quercus suber PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-18
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+NL  Q+
Sbjct: 119 TDDNLLTQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match: A0A059A5B5_EUCGR (Eukaryotic translation initiation factor 5A OS=Eucalyptus grandis GN=EUGRSUZ_K02493 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-18
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+NL  Q+
Sbjct: 119 TDDNLLSQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match: Q71F44_HEVBR (Eukaryotic translation initiation factor 5A (Fragment) OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-18
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 58  HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 117

Query: 67  KDENLRRQV 76
            DENL  Q+
Sbjct: 118 TDENLLTQI 126

[Close]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match: A0A067KGB8_JATCU (Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_11671 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-18
Identity = 49/69 (71.01%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  Q+
Sbjct: 119 TDENLLSQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-18
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V  TDY LIDI EDG+VSL ++NG+ KD L+LP
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLP 117

Query: 67  KDENLRRQV 76
            D+ L +Q+
Sbjct: 118 NDDTLLQQI 126

[Close]
BLAST of Cp4.1LG18g05590 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-17
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V   DY LIDI EDGFVSL ++NG+ KD L+LP
Sbjct: 58  HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLP 117

Query: 67  KDENLRRQV 76
            DE L  Q+
Sbjct: 118 TDEALLTQL 126

[Close]
BLAST of Cp4.1LG18g05590 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-16
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIF  K LE  VPSS   DVP+V   DY LIDI EDGFVSL +++G  KD L+LP
Sbjct: 58  HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLP 117

Query: 67  KDENLRRQV 76
            D+ L  Q+
Sbjct: 118 TDDGLTAQM 126

[Close]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: gi|697127685|ref|XP_009617887.1| (PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana tomentosiformis])

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  QV
Sbjct: 119 TDENLLNQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: gi|350536449|ref|NP_001234503.1| (eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-18
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +E+GN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL +QV
Sbjct: 119 TDENLLKQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: gi|747073995|ref|XP_011083979.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Sesamum indicum])

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-18
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD L+LP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLP 118

Query: 67  KDENLRRQV 76
            DENL  Q+
Sbjct: 119 TDENLLNQI 127

[Close]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: gi|641864365|gb|KDO83051.1| (hypothetical protein CISIN_1g031432mg [Citrus sinensis])

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-18
Identity = 50/69 (72.46%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFV IDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            DENL  QV
Sbjct: 119 TDENLLSQV 127

[Close]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match: gi|702496224|ref|XP_010037186.1| (PREDICTED: eukaryotic translation initiation factor 5A-2-like [Eucalyptus grandis])

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-18
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 7   HFVAIDIFNGKILEVFVPSSQKYDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLP 66
           HFVAIDIFNGK LE  VPSS   DVP+V  TDY LIDI EDGFVSL +ENGN KD LRLP
Sbjct: 59  HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118

Query: 67  KDENLRRQV 76
            D+NL  Q+
Sbjct: 119 TDDNLLSQI 127

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g05590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF5A2_SOLLC1.9e-2072.46Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1[more]
IF5A3_SOLTU7.1e-2071.01Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=... [more]
IF5A2_NICPL1.6e-1969.57Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A1_SOLTU1.6e-1971.01Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 P... [more]
IF5A_MANES2.1e-1969.57Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
BLAST of Cp4.1LG18g05590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067H670_CITSI3.5e-1872.46Eukaryotic translation initiation factor 5A OS=Citrus sinensis GN=CISIN_1g031432... [more]
A0A059WQB8_QUESU3.5e-1871.01Eukaryotic translation initiation factor 5A OS=Quercus suber PE=2 SV=1[more]
A0A059A5B5_EUCGR3.5e-1871.01Eukaryotic translation initiation factor 5A OS=Eucalyptus grandis GN=EUGRSUZ_K02... [more]
Q71F44_HEVBR4.6e-1871.01Eukaryotic translation initiation factor 5A (Fragment) OS=Hevea brasiliensis GN=... [more]
A0A067KGB8_JATCU4.6e-1871.01Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_11671 PE=... [more]
BLAST of Cp4.1LG18g05590 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.14.1e-1860.87 eukaryotic elongation factor 5A-1[more]
AT1G69410.12.0e-1762.32 eukaryotic elongation factor 5A-3[more]
AT1G26630.11.0e-1659.42 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of Cp4.1LG18g05590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|697127685|ref|XP_009617887.1|1.3e-1873.91PREDICTED: eukaryotic translation initiation factor 5A-1/2 [Nicotiana tomentosif... [more]
gi|350536449|ref|NP_001234503.1|3.0e-1872.46eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum][more]
gi|747073995|ref|XP_011083979.1|3.9e-1871.01PREDICTED: eukaryotic translation initiation factor 5A-2 [Sesamum indicum][more]
gi|641864365|gb|KDO83051.1|5.1e-1872.46hypothetical protein CISIN_1g031432mg [Citrus sinensis][more]
gi|702496224|ref|XP_010037186.1|5.1e-1871.01PREDICTED: eukaryotic translation initiation factor 5A-2-like [Eucalyptus grandi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR014722Rib_L2_dom2
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf
IPR001884IF5A-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006452 translational frameshifting
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05590.1Cp4.1LG18g05590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 7..75
score: 4.8
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 6..40
score: 1.6
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 35..76
score: 7.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 34..75
score: 7.4
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 6..32
score: 6.
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 34..76
score: 1.
NoneNo IPR availableunknownCoilCoilcoord: 72..77
scor
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 7..75
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g05590MELO3C016963.2Melon (DHL92) v3.6.1cpemedB405
Cp4.1LG18g05590CsaV3_4G036580Cucumber (Chinese Long) v3cpecucB0460
Cp4.1LG18g05590CsaV3_1G028950Cucumber (Chinese Long) v3cpecucB0429
Cp4.1LG18g05590Bhi02G000688Wax gourdcpewgoB0466
Cp4.1LG18g05590Bhi09G002479Wax gourdcpewgoB0454
Cp4.1LG18g05590CsGy1G017860Cucumber (Gy14) v2cgybcpeB040
Cp4.1LG18g05590CsGy4G024590Cucumber (Gy14) v2cgybcpeB499
Cp4.1LG18g05590Carg02841Silver-seed gourdcarcpeB0897
Cp4.1LG18g05590Carg14088Silver-seed gourdcarcpeB0715
Cp4.1LG18g05590Carg09995Silver-seed gourdcarcpeB0185
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g05590Cucurbita pepo (Zucchini)cpecpeB360
Cp4.1LG18g05590Cucurbita pepo (Zucchini)cpecpeB370
Cp4.1LG18g05590Cucumber (Gy14) v1cgycpeB0183
Cp4.1LG18g05590Cucurbita maxima (Rimu)cmacpeB038
Cp4.1LG18g05590Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g05590Cucurbita maxima (Rimu)cmacpeB132
Cp4.1LG18g05590Cucurbita moschata (Rifu)cmocpeB013
Cp4.1LG18g05590Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g05590Cucurbita moschata (Rifu)cmocpeB108
Cp4.1LG18g05590Wild cucumber (PI 183967)cpecpiB351
Cp4.1LG18g05590Cucumber (Chinese Long) v2cpecuB350
Cp4.1LG18g05590Cucumber (Chinese Long) v2cpecuB356
Cp4.1LG18g05590Bottle gourd (USVL1VR-Ls)cpelsiB307
Cp4.1LG18g05590Watermelon (Charleston Gray)cpewcgB334
Cp4.1LG18g05590Watermelon (Charleston Gray)cpewcgB335
Cp4.1LG18g05590Watermelon (97103) v1cpewmB362
Cp4.1LG18g05590Watermelon (97103) v1cpewmB372
Cp4.1LG18g05590Melon (DHL92) v3.5.1cpemeB334
Cp4.1LG18g05590Melon (DHL92) v3.6.1cpemedB392