Carg09995 (gene) Silver-seed gourd

Overview
NameCarg09995
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEukaryotic translation initiation factor 5A
LocationCucurbita_argyrosperma_scaffold_030 : 881573 .. 885352 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGACGAGGAGCACCACTTTGACTCTAGGGCCAACGCCAGAGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCTGGCTACATCGTAATCAATAACAGACCCTGCAAGGTTTCCTTCTTTCCTTTTTTTCTCTGCATCTTTTCTGAGATTGACTTTGTTCTTCTTCCATGGAGTAAATTTTGGGGGCTTGTGCTATTCTTTGTTATAATTTTTCCTTGGCTCTTTGTAAGGGCAGACGTTTGATTGATTGTTGTTTCTGTACTTCTATTTCCTAGTGAAGATTGTCCCTGAATTTTTACTCCGTGACTACTGATTATGGCAATTTTTACTATTGTTTATGGTCTCCCCGATTGATTTAGGTTTCCCCTTTAATTTCTCTTGTTTCGCAACGTTGATGAAACCAGGGCCGTTTAGTTACGTATTATGTGTTATCCCACAGTAACAATTGCAGGGGGAAAATTTTCGAAGAGGTTGTGCAAAATTTGGCATAATCGGTTTATTGTTTTTAATGGCAAGTATTTCTTTCACCCAAATTGGATGCGTAATATGATTTGTCGCCTTGGTTTGCCAAAAATGCATATGGACTTGGCTTATTGACTTATTGAGTTTTGCTATGGGACATGCCGTCGAACAGTTCAACAGGAACATACGGGCCATATACTGTTTACCATATATCGTCAAATGTCCCCTGTTGTGTGTTGTACAGTGCAAACAATGAGGTAGATGTCAGGCTAAATGTTAATAGTGTTTAAAAACCACGAAATTGAAACTATCCACTTTGAGCATAAGCTCTCGTGACTCTATTTTTGGTTTTGGAGATATTATCCACTTTGAGCAATAGCTCTCATGACTCTATTTTTGGTTTTTCCAAAATGGCTTCTATCAATGGAGATGTATTCCTTACTTATAAATTCATAATCAACCTCTTAATTAGCTGATGTGAGACTCCTCTCCCGACAATCCTCAACAATCCTCCTATTGAACAAAGTACACCAGAGAGCCTTCCCTGAGACCTATGGAGCCCTTGAACAACCTCCCCTTAATAGAGGCTCGACTTCTTCTCTAGAGCCCTTGAACAAAGGCACCCTTTATTAAACTCTTGAGTCACTTTTGACTACTAAGAAGCAGTTTTCACAGCTCCTTATAGATTTGACGAGACTTTGAAACACTGAAATCAACTGAAACACATTGAAGAGACCTAAAAGTCAACTTCAGCCTACAACACAGAGTTGTAAAGAGTCGGTTGATAGAGATGTCAACCAGTTGAGTGGGGGAGGATATCACGGTCATGCTTGTCCAAGGCATGTTACCTATGGCCGCATGACAGATGTTCCAGTCTTGCTTGTCTAAGTCGGTTGACAGGGAGGATGTCATGGTCATGCTTGTCTTGCTTGTTCAAGTCAGTTGACAGGTCTTTGTTCAACTCTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTGTTAGACATGACTAGATTAAGGGTATGGTTCTGATACCATGTTAAAAACCACAAACTTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTTTCACGACTTTGTTTTTTGTTTTCCTAAAAGGAGTCCTACCAATGGAGATGTATTTCTTACCTATAAACCTATGATCAACTCCTTAATTAGCTGATGTGGGACTCCTCTCCCAACAATCCTCAACAAATAGTAGATATAATCTTCATGCTGCATTTGTCTTCTTGGTTAACAAAACGTCTTTGAAGCATTAGCAAAGCTTTTCTTTCCTAGAAAGAACTTTTGTATGCATGCCACCTTCTTTTTGTGTTGATACAATGTCCATGGTTATAGTTCCATTTTCCCTGGGACATTCCTTTGGAGCCTTCCTTGGCTCGAGCTATATGGAAAGATAAATACCCAACGAAGAATAGATTTTTTTCTTTGAGAAATCTCACACAAAGCTATCAACATCAAAGATCTCCTCAAAGATGTATGCCATGCCATTTCACCCGGTTGGTGCACTTTGATGATGAATTTCAAAACCACATTTTCATTGCGTATGACAATGATTTTCTGAAATGAACCATGGATATATGAAATAATATTCTTTCAAGCTACTTGGCCAAGCATATTTTGGCTGCCATATATCATCACTTTTTTCTATCTCCCTTCATTTCAGGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTAATTTCTTTGTCACTCTCTTCTTGTGTTCTACTCTCTAAGTACTAATTTTATTCTACTAACAAACGTTGCTTGTATTCCTTGCAGGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGCGAGGATGGTTTTGTAAGTTTCAATTATATTGAAACATGATATTGCTTTATATACGAAGCTTAGATCAATTTTTATGTCTCTTGCTTCAATTTAGATTTGAGAAATATCCCCGTTCACCCCTTCCCAAGAGAGAGGGAGAGAAAGCTCCCTGTTATAACTTCATAACAAAAGTGGGAGACCCTGCATCAGTTGGAACATCAGTTAGAGAGGGGAACGAAGCATTCTTTATAAGGTTGGAGCATCAGTTAGAGAGGGGAACGAAGCATTATTTATAAGGTTGTGGAAATCTGACGCATTTTAAAAACTTTGAGGGGAAGCCTGAAGGAAAAGTCTAAAGAGGACAATATCTATTAGTGGTGGGCTTGGGCCGTTACAAATAGTATCAAAGCCAGTCACCGGATGATATGCTAGCAAGGACGTTGGCCCCCAAGGGGAGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGGAACCTCTCCCTAGCAGATGCGTTTTAAAAACTTTGAGGAGAAGCTCGAAACGGAAAGCCCAAAAAGGACCATATCGGCTAGTGGTGAGTTTGGGCCGTTAGTTCGATTGGAAGGAGTTTTGCAATCTTAATCTATAGCAGAGGATCTTGAGTCGAGACCTATTGACTTGGTAATTTTGCAGGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGACGCTCCCCAAGGATGAAAATCTGCGTAGGCAGGTACATAAATGATTATACCATTACATTTACAAACCTTCAAGCCATTGCTTTATAGCTTTCTGCAGCACCATCTCTGTTCCATTTATTTTCATGCCAATAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGATGGCTCAGAATCACCCCAACCAAAAGTTCTATCAAGTATGTTTATATGTCATAAAACCATATTCTCAGCAAGGTACTTCAAGCTATTGATCCTTGCACACTGCTGAAACGATACATACATGTTTTACTTTATATAGTACACTACTTATAAAATATGTAACCCCCCCTGTTTTCTAACAAGCCCTTTGAATAAGATCTTGGGTTCTAGTAGGAAGATAAACAAACAGGTTTTCTGGTCTTTTGGTCTCTTTCTTCTTTTGTCTAGAGGTTGTTATTAAGGTCATTGAAGCTCATCACTATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGA

mRNA sequence

ATGTCGGACGAGGAGCACCACTTTGACTCTAGGGCCAACGCCAGAGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCTGGCTACATCAAATCTCACACAAAGCTATCAACATCAAAGATCTCCTCAAAGATGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGCGAGGATGGTTTTGATGGTCTGACGCTCCCCAAGGATGAAAATCTGCGTAGGCAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAAGGTTGTTATTAAGGTCATTGAAGCTCATCACTATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGA

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTTGACTCTAGGGCCAACGCCAGAGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCTGGCTACATCAAATCTCACACAAAGCTATCAACATCAAAGATCTCCTCAAAGATGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGCGAGGATGGTTTTGATGGTCTGACGCTCCCCAAGGATGAAAATCTGCGTAGGCAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAGAAAGGTTGTTATTAAGGTCATTGAAGCTCATCACTATCGAGTGGCTGTTGTTTCCTTGAAAAAGGGCGAGGGCTTGGCCCGACCGATATGA

Protein sequence

MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAKCHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGFDGLTLPKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPRKVVIKVIEAHHYRVAVVSLKKGEGLARPI
Homology
[Close]
BLAST of Carg09995 vs. NCBI nr
Match: OTG16395.1 (putative translation elongation factor IF5A [Helianthus annuus])

HSP 1 Score: 196.4 bits (498), Expect = 8.1e-47
Identity = 101/151 (66.89%), Postives = 117/151 (77.48%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEH F+S+A+A   +TYP++A T + +  H  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGT-IRKGGH--IVIKNHACKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGFDGLTLPKDENLRRQLK 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V   DY LIDI EDGFD L LP D+ L  Q+K
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVSRADYQLIDISEDGFDDLKLPTDDALLTQIK 120

Query: 121 EGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           +GFA  KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 DGFAEGKDLVVSVMSAMGEEQICALKDIGPK 148

[Close]
BLAST of Carg09995 vs. NCBI nr
Match: XP_007011943.1 (PREDICTED: eukaryotic translation initiation factor 5A [Theobroma cacao] >XP_012071499.1 eukaryotic translation initiation factor 5A [Jatropha curcas] >EOY29562.1 Eukaryotic translation initiation factor 5A-1 [Theobroma cacao] >KDP38674.1 hypothetical protein JCGZ_04027 [Jatropha curcas])

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 104/162 (64.20%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFV IDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DENL  Q+K+GFA  KDLVVTVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. NCBI nr
Match: XP_008443857.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 104/162 (64.20%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+NL  QLK+GFA  KDLV+TVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. NCBI nr
Match: XP_022135162.1 (eukaryotic translation initiation factor 5A-2-like [Momordica charantia])

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 104/162 (64.20%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+NL  QLK+GFA  KDLV+TVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. NCBI nr
Match: XP_022930431.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_022969168.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita maxima] >XP_023529298.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 104/162 (64.20%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+NL  QLK+GFA  KDLV+TVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. TAIR10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-43
Identity = 96/162 (59.26%), Postives = 112/162 (69.14%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHF+S ++A   +TYP++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIF  K+LE  VPSS  CDVP+V  TDY LIDI EDG+           D L L
Sbjct: 61  CHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+ L +Q+K GF   KDLVV+VMSAMGEEQI ALKDIGP+
Sbjct: 121 PNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of Carg09995 vs. TAIR10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3)

HSP 1 Score: 171.4 bits (433), Expect = 5.1e-43
Identity = 94/162 (58.02%), Postives = 111/162 (68.52%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSD+EHHF+S ++A   +TYP++A   + +  H  I IK     VVEVSTSK GKHGHAK
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGN-IRKGGH--IVIKGRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIF  K+LE  VPSS  CDVP+V   DY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DE L  QLK GF   KD+VV+VMSAMGEEQ+CALK++GP+
Sbjct: 121 PTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of Carg09995 vs. TAIR10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 161.0 bits (406), Expect = 6.8e-40
Identity = 88/163 (53.99%), Postives = 109/163 (66.87%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSD+EHHF++ + +   +TYP+ A   + +  H  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGN-IRKGGH--IVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIF  K+LE  VPSS  CDVP+V   DY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPRK 153
           P D+ L  Q++ GF   KD+VV+VMS+MGEEQICA+K++G  K
Sbjct: 121 PTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVGGGK 159

[Close]
BLAST of Carg09995 vs. Swiss-Prot
Match: sp|P24922|IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 102/162 (62.96%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEH F+S+A+A   +TYP++A T + +  H  I IK     VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGT-IRKNGH--IVIKGRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIF GK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+NL  Q+K+GFA  KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. Swiss-Prot
Match: sp|Q945F4|IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.5e-47
Identity = 101/162 (62.35%), Postives = 115/162 (70.99%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHF+  A+A   +TYP++A T      +  I IK     VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIR---KNGYIVIKSRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D++L  Q+K+GFA  KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. Swiss-Prot
Match: sp|Q9AXJ4|IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 5.5e-47
Identity = 99/162 (61.11%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHF+S+A+A   +T+P++A T      +  I IK+    V+EVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVMEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFV IDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DENL  Q+K+GFA  KDLVV+VMSAMGEE+IC+LKDIGP+
Sbjct: 121 PTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]
BLAST of Carg09995 vs. Swiss-Prot
Match: sp|Q9SC12|IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis OX=93496 GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.5e-47
Identity = 101/162 (62.35%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEH F+S+A+A   +TYP++A T + +  H  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGT-IRKGGH--IVIKNRACKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+ L  Q+K+GF   KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. Swiss-Prot
Match: sp|P56337|IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-47
Identity = 99/162 (61.11%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHF+S+A+A   +TYP++A T + +  H  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGT-IRKSGH--IVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIF GK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+ L  Q+K+GFA  KDLV++VMSAMGEEQIC +KDIGP+
Sbjct: 121 PTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of Carg09995 vs. TrEMBL
Match: tr|A0A251TZ20|A0A251TZ20_HELAN (Eukaryotic translation initiation factor 5A OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0270931 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 101/151 (66.89%), Postives = 117/151 (77.48%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEH F+S+A+A   +TYP++A T + +  H  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGT-IRKGGH--IVIKNHACKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGFDGLTLPKDENLRRQLK 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V   DY LIDI EDGFD L LP D+ L  Q+K
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVSRADYQLIDISEDGFDDLKLPTDDALLTQIK 120

Query: 121 EGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           +GFA  KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 DGFAEGKDLVVSVMSAMGEEQICALKDIGPK 148

[Close]
BLAST of Carg09995 vs. TrEMBL
Match: tr|A0A1S3B9T8|A0A1S3B9T8_CUCME (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487352 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 104/162 (64.20%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P D+NL  QLK+GFA  KDLV+TVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. TrEMBL
Match: tr|A0A061GK81|A0A061GK81_THECC (Eukaryotic translation initiation factor 5A OS=Theobroma cacao OX=3641 GN=TCM_037062 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 104/162 (64.20%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFV IDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DENL  Q+K+GFA  KDLVVTVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. TrEMBL
Match: tr|A0A067L3L6|A0A067L3L6_JATCU (Eukaryotic translation initiation factor 5A OS=Jatropha curcas OX=180498 GN=JCGZ_04027 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.1e-47
Identity = 104/162 (64.20%), Postives = 117/162 (72.22%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS+A+A   +T+P++A T      +  I IK+    VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIR---KNGYIVIKNRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFV IDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DENL  Q+K+GFA  KDLVVTVMSAMGEEQICALKDIGP+
Sbjct: 121 PTDENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of Carg09995 vs. TrEMBL
Match: tr|A0A1S3UHM8|A0A1S3UHM8_VIGRR (Eukaryotic translation initiation factor 5A OS=Vigna radiata var. radiata OX=3916 GN=LOC106765375 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 105/162 (64.81%), Postives = 116/162 (71.60%), Query Frame = 0 

Query: 1   MSDEEHHFDSRANAREPETYPEEARTWLHQISHKAINIKDLLKDVVEVSTSKPGKHGHAK 60
           MSDEEHHFDS A+A   +TYP++A T      +  I IK     VVEVSTSK GKHGHAK
Sbjct: 1   MSDEEHHFDSHADAGASKTYPQQAGTIR---KNGYIVIKSRPCKVVEVSTSKTGKHGHAK 60

Query: 61  CHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF-----------DGLTL 120
           CHFVAIDIFNGK+LE  VPSS  CDVP+V  TDY LIDI EDGF           D L L
Sbjct: 61  CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRL 120

Query: 121 PKDENLRRQLKEGFAHRKDLVVTVMSAMGEEQICALKDIGPR 152
           P DE+L  Q+KEGFA  KDLVV+VMSAMGEEQICALKDIGP+
Sbjct: 121 PTDESLLSQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

The following BLAST results are available for this feature:
BLAST of Carg09995 vs. NCBI nr
Match NameE-valueIdentityDescription
OTG16395.18.1e-4766.89putative translation elongation factor IF5A [Helianthus annuus][more]
XP_007011943.11.4e-4664.20PREDICTED: eukaryotic translation initiation factor 5A [Theobroma cacao] >XP_012... [more]
XP_008443857.11.4e-4664.20PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo][more]
XP_022135162.11.4e-4664.20eukaryotic translation initiation factor 5A-2-like [Momordica charantia][more]
XP_022930431.11.4e-4664.20eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0229... [more]
BLAST of Carg09995 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.11.7e-4359.26eukaryotic elongation factor 5A-1[more]
AT1G69410.15.1e-4358.02eukaryotic elongation factor 5A-3[more]
AT1G26630.16.8e-4053.99Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of Carg09995 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P24922|IF5A2_NICPL2.5e-4762.96Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
sp|Q945F4|IF5A2_MEDSA5.5e-4762.35Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV... [more]
sp|Q9AXJ4|IF5A_MANES5.5e-4761.11Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
sp|Q9SC12|IF5A_SENVE5.5e-4762.35Eukaryotic translation initiation factor 5A OS=Senecio vernalis OX=93496 GN=EIFS... [more]
sp|P56337|IF5A5_SOLTU9.4e-4761.11Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Carg09995 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A251TZ20|A0A251TZ20_HELAN5.4e-4766.89Eukaryotic translation initiation factor 5A OS=Helianthus annuus OX=4232 GN=Hann... [more]
tr|A0A1S3B9T8|A0A1S3B9T8_CUCME9.1e-4764.20Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103487... [more]
tr|A0A061GK81|A0A061GK81_THECC9.1e-4764.20Eukaryotic translation initiation factor 5A OS=Theobroma cacao OX=3641 GN=TCM_03... [more]
tr|A0A067L3L6|A0A067L3L6_JATCU9.1e-4764.20Eukaryotic translation initiation factor 5A OS=Jatropha curcas OX=180498 GN=JCGZ... [more]
tr|A0A1S3UHM8|A0A1S3UHM8_VIGRR1.2e-4664.81Eukaryotic translation initiation factor 5A OS=Vigna radiata var. radiata OX=391... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006452translational frameshifting
GO:0045905positive regulation of translational termination
GO:0045901positive regulation of translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like_sf
IPR012340NA-bd_OB-fold
IPR019769Trans_elong_IF5A_hypusine_site
IPR014722Rib_L2_dom2
IPR001884IF5A-like
IPR020189Transl_elong_IF5A_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006452 translational frameshifting
cellular_component GO:0005840 ribosome
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09995-RACarg09995-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 88..146
e-value: 9.1E-4
score: 27.9
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 89..146
e-value: 1.2E-10
score: 41.2
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 89..152
e-value: 6.9E-15
score: 56.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11673:SF16SUBFAMILY NOT NAMEDcoord: 1..150
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..149
e-value: 3.7E-35
score: 118.7
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 37..145
e-value: 3.4E-22
score: 76.6
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 1..150
IPR014722Ribosomal protein L2, domain 2GENE3DG3DSA:2.30.30.30coord: 18..88
e-value: 2.2E-23
score: 83.8
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 53..60
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 89..148
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 36..88