Cp4.1LG18g02540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g02540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Isopentenyl diphosphate isomerase
Location	Cp4.1LG18 : 4181862 .. 4183895 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATGCCCTTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGACGACGAGTGCGTCTTCTATTTCTCGTTTTATGTTTTTGTTGTTTGTCTTTTGATTTTTCGTTCCGCTTCTTCTTGTCGCTTTTGACTTTGATTTGTGCGTGGTCATGTTGTCGATTGATTCGTTGATTGATTGGTTTCTGTGTGTTAATGTTGACCTGATTTGGATTCTTTTGTGTTTATTGCTGGAGCATTGGTGTGTTATGGGAAAACGGTGAAGTGTGTATTGATTTGGATGCTTAAGGTTTTTGTGGAACTTCGAGTGTTTGTGGATCAATTATAGGATCTGTTCTCGTTTGAAATCGGATGATCATCATATCCGAAAGTTTAATTGTCCTTTCTCTCTCTTTCTGATGTTATTTTTCAGCTAATTTCACTTTCTTCTTCTTTCTTTACAGTTTTTGTGTAGTTTCGCTTCTTTTGACTGGTTATTTTACGTGATTGTGTTGTTGATTGATCCTATGTTTCTCTCCATTGCTCTGATTTGCTTCATTTGGGGGGAAGAACTAAACTCGAAGCCTGATTTTTGTGTTTATGATTTGCTGAACCAGTTGAATTGGGTCTCAATTGAGGTTCCTGATGAAATAATTTGCAACAATTTGTACAATACCATGTTTGAATTTGGATGACTATCATGTCCCCGACTTTAATGGTCTTCTCACATCCTTGTCTCTCTCTCTCTCTTGCTGATATTATCTTTCATCAATTCATTTCACCTTTTTTACGGGTTTTATGCATTGTTCTTGCTTTTGACTTTGATTTTTACATCATCATATAGTTAATAGATCCCCTCTTTTCTCTACTTTGTCTTATTGACATGTTCTCTGTATTTGAATGGGGAAGGAATCAAATCAAAGCCTCTTTTTCTCCGTCAACGGGGTGAAAATTGTTGATTAGGCATTTCAAACCAGTCGAATTGGGTTTCATTCATTTGAGGTTCCTGCTGATGATTTGATGCTTAAAATTTTCTGGAATGATGAACATCTGTGGCACAATAATAAGGATGGAAAATGATTTGATGCTTAAAATTCCATACCTTTTGATCTGTAAGTAATGATGGAAAATGTTCTTTGTCATGTTAAATCATCACTAAATTCAAAAAGCTGAAATCTGTGATGAATCTAATTCTCTTCTAGTTCAACAACCAGTAAGGTTAAGGGATTCGAATCTCTAAACTATGCTCATGTTGGCGAGTAATCCAACTGTTTAATATATTTCCCGAGCTTCTACGTTTTTGTTTCGGTGAACTCAGGGATTGTTATGTGTCATACCTTAATGCTTGTAACTGGTTCATCATTTTATTCTTCAACATCGTTTTTTTCGCCTCGTTTTTATGTGAATTGTAATGTGTCATCCTTTTTCGTTTCTCTCTCGTGACCCTTTACCTTGGCTTCACTGGATCACTGTGGCTATTACTCTAAAATATCATGTATTCTCATCTGCTCGATGATGTCTTGATCAGAATTCAAGGGAATTGATGGTTTTGTGTGCATATATCAGGCCTTCATTTCTGTTAGAAACCTTTAAAATAAATCATGCTTGCTCAATCATTTTTGGCTCACACGTTCCTCGTATTGGTCTCGAATTCATGGTCAGGTGCATTTTAGTGGACGAGAACGACCGAGTCGTTGGTCATGAATCCAAGTACAACTGTAAGTCAAATCTTATATCCAGTATTGATTTCTTAGAAGCTAGTTTCCTTGTTATTGGCTATAGTTTTGAGCTTGGATAGTGGATTAATGCAGAACAAATATTTGTTCTTCTAACCTGCAGGTCACTTGATGGAAAATATTGAATCTAAGAACTGGCTGCATCGCGCGTTCAGCGTCTTTTTATTCAACTCGAAATATGAATTGCTTCTTCAGGTATGTTATTCGGGTCGGGTTTTGATTTGCACTGCCTGTGCATAGTTTGCTCTATTAAATGATGTCTTTGACAGATTAGAACGTTTGTTTTCATGGCATGGATGGTTTCTTGA

mRNA sequence

ATGGCAGATGCCCTTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGACGACGAGTGCATTTTAGTGGACGAGAACGACCGAGTCGTTGGTCATGAATCCAAGTACAACTGTCACTTGATGGAAAATATTGAATCTAAGAACTGGCTGCATCGCGCGTTCAGCGTCTTTTTATTCAACTCGAAATATGAATTGCTTCTTCAGATTAGAACGTTTGTTTTCATGGCATGGATGGTTTCTTGA

Coding sequence (CDS)

ATGGCAGATGCCCTTCCTGATGCTGCCATGGACGCCGTCCAGAAGCGCCTCATGTTCGACGACGAGTGCATTTTAGTGGACGAGAACGACCGAGTCGTTGGTCATGAATCCAAGTACAACTGTCACTTGATGGAAAATATTGAATCTAAGAACTGGCTGCATCGCGCGTTCAGCGTCTTTTTATTCAACTCGAAATATGAATTGCTTCTTCAGATTAGAACGTTTGTTTTCATGGCATGGATGGTTTCTTGA

Protein sequence

MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQIRTFVFMAWMVS

Homology

[Close]

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.9e-28
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 1  MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
          M DA  DA MDAVQKRLMF+D+CILVDEND VVGH++KYNCHLME IES+N LHRAFSVF
Sbjct: 1  MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVF 60

Query: 61 LFNSKYELLLQIRT 75
          LFNSKYELLLQ R+
Sbjct: 61 LFNSKYELLLQQRS 74

[Close]

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana GN=IPP2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7   DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
           DA MDAVQ+RLMF+DECILVDE DRVVGH+SKYNCHLMENIE+KN LHRAFSVFLFNSKY
Sbjct: 57  DAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKY 116

Query: 67  ELLLQIRT 75
           ELLLQ R+
Sbjct: 117 ELLLQQRS 124

[Close]

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7   DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
           DA MDAVQ+RLMF+DECILVDEND+VVGHESKYNCHLME IES+N LHRAFSVFLFNSKY
Sbjct: 60  DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKY 119

Query: 67  ELLLQIRT 75
           ELLLQ R+
Sbjct: 120 ELLLQQRS 127

[Close]

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-27
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1   MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
           M D   DA MDAVQ+RLMF+DECILVDEND VVGH++KYNCHLME IES N LHRAFSVF
Sbjct: 75  MGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVF 134

Query: 61  LFNSKYELLLQIRT 75
           LFNSKYELLLQ R+
Sbjct: 135 LFNSKYELLLQQRS 148

[Close]

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7   DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
           DA MDAVQ+RLMF+DECILVDENDRVVGH++KYNCHLME IE++N LHRAFSVFLFNSKY
Sbjct: 64  DAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKY 123

Query: 67  ELLLQIRT 75
           ELLLQ R+
Sbjct: 124 ELLLQQRS 131

[Close]

BLAST of Cp4.1LG18g02540 vs. TrEMBL
Match: A0A0A0M046_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656460 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-30
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 1  MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
          M  ALPDAAMDAVQKRLMF+DECILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVF
Sbjct: 1  MGVALPDAAMDAVQKRLMFEDECILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVF 60

Query: 61 LFNSKYELLLQIRT 75
          LFNSKYELLLQ R+
Sbjct: 61 LFNSKYELLLQQRS 74

[Close]

BLAST of Cp4.1LG18g02540 vs. TrEMBL
Match: K7NBZ8_SIRGR (Isopentenyl diphosphate isomerase OS=Siraitia grosvenorii PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.7e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 6   PDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK 65
           PDAAMDAVQKRLMF+DECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK
Sbjct: 50  PDAAMDAVQKRLMFEDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK 109

Query: 66  YELLLQIRT 75
           YELLLQ R+
Sbjct: 110 YELLLQQRS 118

[Close]

BLAST of Cp4.1LG18g02540 vs. TrEMBL
Match: E3W210_SANAL (Isopentyl diphosphate isomerase OS=Santalum album PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-27
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 1   MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
           MAD   D AMDAVQ+RLMF+DECILVDENDR+VGHESKYNCHLME IES+N LHRAFSVF
Sbjct: 67  MADVAADPAMDAVQRRLMFEDECILVDENDRIVGHESKYNCHLMEKIESENLLHRAFSVF 126

Query: 61  LFNSKYELLLQIRT 75
           LFNSKYELLLQ R+
Sbjct: 127 LFNSKYELLLQQRS 140

[Close]

BLAST of Cp4.1LG18g02540 vs. TrEMBL
Match: A0A022RI88_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010795mg PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-27
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
           M DA  D+AMDAVQ+RLMF+DECILVDENDRVVGH+SKYNCHLME IES+N LHRAFSVF
Sbjct: 67  MGDAAADSAMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVF 126

Query: 61  LFNSKYELLLQIRT 75
           LFNSKYELLLQ R+
Sbjct: 127 LFNSKYELLLQQRS 140

[Close]

BLAST of Cp4.1LG18g02540 vs. TrEMBL
Match: A0A165WP97_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015080 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7  DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
          D  MDAVQ+RLMFDDECILVDENDRVVGHESKYNCHLMENIESKN LHRAFSVFLFNSKY
Sbjct: 6  DTTMDAVQRRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNLLHRAFSVFLFNSKY 65

Query: 67 ELLLQIRT 75
          ELLLQ R+
Sbjct: 66 ELLLQQRS 73

[Close]

BLAST of Cp4.1LG18g02540 vs. TAIR10
Match: AT3G02780.1 (AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2)

HSP 1 Score: 122.9 bits (307), Expect = 9.5e-29
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7   DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
           DA MDAVQ+RLMF+DECILVDE DRVVGH+SKYNCHLMENIE+KN LHRAFSVFLFNSKY
Sbjct: 57  DAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKY 116

Query: 67  ELLLQIRT 75
           ELLLQ R+
Sbjct: 117 ELLLQQRS 124

[Close]

BLAST of Cp4.1LG18g02540 vs. TAIR10
Match: AT5G16440.1 (AT5G16440.1 isopentenyl diphosphate isomerase 1)

HSP 1 Score: 120.2 bits (300), Expect = 6.2e-28
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7   DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
           DA MDAVQ+RLMF+DECILVDENDRVVGH++KYNCHLME IE++N LHRAFSVFLFNSKY
Sbjct: 64  DAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKY 123

Query: 67  ELLLQIRT 75
           ELLLQ R+
Sbjct: 124 ELLLQQRS 131

[Close]

BLAST of Cp4.1LG18g02540 vs. NCBI nr
Match: gi|659085944|ref|XP_008443691.1| (PREDICTED: LOW QUALITY PROTEIN: isopentenyl-diphosphate Delta-isomerase I [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
           M DALPDAAMDAVQKRLMF+DECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF
Sbjct: 62  MGDALPDAAMDAVQKRLMFEDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 121

Query: 61  LFNSKYELLLQIRT 75
           LFNSKYELLLQ R+
Sbjct: 122 LFNSKYELLLQQRS 135

[Close]

BLAST of Cp4.1LG18g02540 vs. NCBI nr
Match: gi|449442667|ref|XP_004139102.1| (PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-30
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1


Query: 1  MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
          M  ALPDAAMDAVQKRLMF+DECILVDEND VVGHESKYNCHLMENIESKNWLHRAFSVF
Sbjct: 1  MGVALPDAAMDAVQKRLMFEDECILVDENDCVVGHESKYNCHLMENIESKNWLHRAFSVF 60

Query: 61 LFNSKYELLLQIRT 75
          LFNSKYELLLQ R+
Sbjct: 61 LFNSKYELLLQQRS 74

[Close]

BLAST of Cp4.1LG18g02540 vs. NCBI nr
Match: gi|343466167|gb|AEM42977.1| (isopentenyl diphosphate isomerase [Siraitia grosvenorii])

HSP 1 Score: 137.9 bits (346), Expect = 8.1e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 6   PDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK 65
           PDAAMDAVQKRLMF+DECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK
Sbjct: 50  PDAAMDAVQKRLMFEDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSK 109

Query: 66  YELLLQIRT 75
           YELLLQ R+
Sbjct: 110 YELLLQQRS 118

[Close]

BLAST of Cp4.1LG18g02540 vs. NCBI nr
Match: gi|848868367|ref|XP_012834818.1| (PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Erythranthe guttata])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1   MADALPDAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVF 60
           M DA  D+AMDAVQ+RLMF+DECILVDENDRVVGH+SKYNCHLME IES+N LHRAFSVF
Sbjct: 67  MGDAAADSAMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIESENLLHRAFSVF 126

Query: 61  LFNSKYELLLQIRT 75
           LFNSKYELLLQ R+
Sbjct: 127 LFNSKYELLLQQRS 140

[Close]

BLAST of Cp4.1LG18g02540 vs. NCBI nr
Match: gi|1021039777|gb|KZM97558.1| (hypothetical protein DCAR_015080 [Daucus carota subsp. sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 7  DAAMDAVQKRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKY 66
          D  MDAVQ+RLMFDDECILVDENDRVVGHESKYNCHLMENIESKN LHRAFSVFLFNSKY
Sbjct: 6  DTTMDAVQRRLMFDDECILVDENDRVVGHESKYNCHLMENIESKNLLHRAFSVFLFNSKY 65

Query: 67 ELLLQIRT 75
          ELLLQ R+
Sbjct: 66 ELLLQQRS 73

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDI1_CAMAC	9.9e-28	81.08	Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 ...	[more]
IDI2_ARATH	1.7e-27	86.76	Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thalian...	[more]
IDI1_CLABR	2.2e-27	86.76	Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2	[more]
IDI2_CAMAC	3.8e-27	79.73	Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2...	[more]
IDI1_ARATH	1.1e-26	83.82	Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Cp4.1LG18g02540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M046_CUCSA	4.3e-30	91.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G656460 PE=4 SV=1	[more]
K7NBZ8_SIRGR	5.7e-30	95.65	Isopentenyl diphosphate isomerase OS=Siraitia grosvenorii PE=2 SV=1	[more]
E3W210_SANAL	7.6e-27	83.78	Isopentyl diphosphate isomerase OS=Santalum album PE=2 SV=1	[more]
A0A022RI88_ERYGU	7.6e-27	83.78	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a010795mg PE=4 SV=1	[more]
A0A165WP97_DAUCA	7.6e-27	91.18	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015080 PE=4 SV=1	[more]

BLAST of Cp4.1LG18g02540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02780.1	9.5e-29	86.76	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2	[more]
AT5G16440.1	6.2e-28	83.82	isopentenyl diphosphate isomerase 1	[more]

BLAST of Cp4.1LG18g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085944\|ref\|XP_008443691.1\|	6.6e-32	94.59	PREDICTED: LOW QUALITY PROTEIN: isopentenyl-diphosphate Delta-isomerase I [Cucum...	[more]
gi\|449442667\|ref\|XP_004139102.1\|	6.2e-30	91.89	PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Cucumis sativus]	[more]
gi\|343466167\|gb\|AEM42977.1\|	8.1e-30	95.65	isopentenyl diphosphate isomerase [Siraitia grosvenorii]	[more]
gi\|848868367\|ref\|XP_012834818.1\|	1.1e-26	83.78	PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Erythranthe guttata]	[more]
gi\|1021039777\|gb\|KZM97558.1\|	1.1e-26	91.18	hypothetical protein DCAR_015080 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0004452	isopentenyl-diphosphate delta-isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008299	isoprenoid biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR011876	IsopentenylPP_isomerase_typ1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006694	steroid biosynthetic process
biological_process	GO:0016114	terpenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0050992	dimethylallyl diphosphate biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0008299	isoprenoid biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004452	isopentenyl-diphosphate delta-isomerase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g02540.1	Cp4.1LG18g02540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011876	Isopentenyl-diphosphate delta-isomerase, type 1	PANTHER	PTHR10885	ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE	coord: 7..73 score: 4.0
IPR015797	NUDIX hydrolase domain-like	GENE3D	G3DSA:3.90.79.10		coord: 14..74 score: 4.0
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 22..74 score: 4.6
None	No IPR available	PANTHER	PTHR10885:SF4	SUBFAMILY NOT NAMED	coord: 7..73 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g02540	Cucsa.356680	Cucumber (Gy14) v1	cgycpeB0928
Cp4.1LG18g02540	CmaCh10G008350	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g02540	CmaCh11G009340	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g02540	CmoCh11G009560	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g02540	CmoCh10G008650	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g02540	Cla009550	Watermelon (97103) v1	cpewmB350
Cp4.1LG18g02540	Csa1G656460	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g02540	MELO3C010053	Melon (DHL92) v3.5.1	cpemeB332
Cp4.1LG18g02540	ClCG03G010650	Watermelon (Charleston Gray)	cpewcgB322
Cp4.1LG18g02540	CSPI01G32300	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g02540	Lsi06G006930	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g02540	MELO3C010053.2	Melon (DHL92) v3.6.1	cpemedB390
Cp4.1LG18g02540	CsaV3_1G044500	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g02540	Bhi02G001087	Wax gourd	cpewgoB0473
Cp4.1LG18g02540	CsGy1G031210	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g02540	Carg17797	Silver-seed gourd	carcpeB1341
Cp4.1LG18g02540	Carg22724	Silver-seed gourd	carcpeB0757

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g02540	Cp4.1LG00g01510	Cucurbita pepo (Zucchini)	cpecpeB006

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g02540	Wax gourd	cpewgoB0468