Cp4.1LG18g01440 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g01440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger CCCH domain-containing protein
Location	Cp4.1LG18 : 2970002 .. 2974381 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTCACCTTCACATCTCCCGCTTCTTCATTCCCATTTGATTTCCCCTTCTTCGCTTCCATTACTGGGTACTCTTCTCTCTTCTCTCCCATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGGTTCGTTAAGCTTCATAAATGCACGTTTTCAACTTCTTTTTTTCTTTTTTCTTTTCTTTTTTCTTGGCATTTTCAACGTCTTTACTGTTATCTCATTTACCTTGTTCTTGGGTTGTGTTTCCCTTGCTCGGTGTCAATGTTGCTCGTATGTGAAATCCCACTACTGTTGTTTTTTTTTTTCTTCTTGGTTCTGTTGAAAAGGAAATGCATTTCGTTTGATATCTGTATGGATGTTCGTTACTCATTTGTACATGTTGGTCTATTGTGTGAATTGATGGTTTCGATATTTTATAGCATATTTGTGTTTTTAGATTTTTTCTTGGGTAATGCTGTTTTTGGTTCTGTTGAAACTCGAATGTTCATTGTAGAACAATCTCATTGCCTCTGATGCTCCAACCATGTAGCTTTCTCCCTGTTTGAGTATATGGATGTAGTTATAGCGTTTTTGTCTTGTTTGAGTGTATGGTTTGGCGTATCCTCGTTTGGTTTTTGGGTAGTAACTGGAAGTTGCTTTTGGTATTCGGTTAAAGATTGTCATGTTTTCTTCTGAGATCTGGTTAAGGTCTTGGATGTTACTTCACGAGACTACTGTTTATGGGATTTCAATTTCACNAATATATTACATTAAAGACAAACATGAGAACTCCCGTGCACAGCACGTGACTCACACCCATACATTTTTGCAGTCCACCTCACTCTTTCCATCTTATCATTATTTTGACCTAATTTTCAAATCCGCCCCTATTAGGGTTTTCACCTTCACATCTCCCGCTTCTTCATTCCCATTTGATTTCCCCTTCTTCGCTTCCATTACTGGGTACTCTTCTCTCTTCTCTCCCATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGGTTCGTTAAGCTTCATAAATGCACGTTTTCAACTTCTTTTTTTCTTTTTTCTTTTCTTTTTTCTTGGCATTTTCAACGTCTTTACTGTTATCTCATTTACCTTGTTCTTGGGTTGTGTTTCCCTTGCTCGGTGTCAATGTTGCTCGTATGTGAAATCCCACTACTGTTGTTTTTTTTTTTCTTCTTGGTTCTGTTGAAAAGGAAATGCATTTCGTTTGATATCTGTATGGATGTTCGTTACTCATTTGTACATGTTGGTCTATTGTGTGAATTGATGGTTTCGATATTTTATAGCATATTTGTGTTTTTAGATTTTTTCTTGGGTAATGCTGTTTTTGGTTCTGTTGAAACTCGAATGTTCATTGTAGAACAATCTCATTGCCTCTGATGCTCCAACCATGTAGCTTTCTCCCTGTTTGAGTATATGGATGTAGTTATAGCGTTTTTGTCTTGTTTGAGTGTATGGTTTGGCGTATCCTCGTTTGGTTTTTGGGTAGTAACTGGAAGTTGCTTTTGGTATTCGGTTAAAGATTGTCATGTTTTCTTCTGAGATCTGGTTAAGGTCTTGGATGTTACTTCACGAGACTACTGTTTATGGGATTTCAATTTCACATCTTTTTCTAGGAGATGTAATTTTTTTTTCAATCACTGCAATTTCTTGTAGATTTGGACTTTAGGTTATAATGTGCAAGCTTTGTACATTTTTTTATACAGTACTCCTTTCTTCAATCTGTATTTTTCATAACTGTTGCAGTAGAATGTGTAACTAAGTATTCTATTCTGTAGTGTAATTGGTTCAAATTGGTATGTTATCACGATCTTAGTGGACTTTACTGTTTTTATTTCAGTAAATAAAACAATGAAAATTTTGGTGCTATATATTGTTCTTCCTTTCTCCAGCCTGGTGTGGTTATTAATTATAAATGAAAATATATGGTTTAATATTTTTCGGATATATTTTGTTAGAGAACTTAATCTTTGGAATGTGATTTTCTGTCTTCTTCGTCCTGCTGGCCCCTTTCACAGTCGTAATAGTAGTGCACTGTCTTAGTGATGGAAGATGGTATAAACAATATTAGATATTGTAAGCTGGGAGATCATAATACACTGAAATTTTAACTAAGGAAAGTTAATTAATGTTCTCCGACAGAAATGGACTCCTTATCTACTGGTTTAGGAAGCAAATCGAGGCCTTGCACAAAGTTTTTCAGGTGCTAATCTTAACTTATCTAAAATGAATCAATACAATGCAGTGTTAATATTTTTTAATTTCCAGAAAGATTTACTTAATTTGTAAGCAAAATTATTGTGATTTGGACTAATGAATTGGTTAGTTAAAGTTGTTTCAGGTTATGCATTGATGTAATCATAACAACAATCACTGAACTGAAATAGTTGAATCACAAGAGTTCAGTGGGTATAACATTTTGCTGGAATTTGTCTAAATTGAAAGCAATACATTTGATGCCAAACTTGTTATCCCTAAAGTGGATAAAATAATTCTTACTTGTACCTTTTCAAGTAAGCAGTGTGATGCAGAATTGATTGGCATCTTAAGTTATGGTAACTGGTTTTGATCAAAGGAATAAAAAAGTTATGGTAATGGTTATTCTATTTGTTTCAATGCTATCACAGTGCGATACATCCATTTTTAGGTGCAAATTGCATCTTTCTGTGTCTTCTACATTCTTTTTTGTTGGTGTATCAGTTCTTCTTATGCCTTTTACCAATTGATGTTTTGTGAATATCTTGAAGCCTCAACTTCTTTTATTTATATGTATATCTGTACTTGTTCTTCTCATTTTCTGTCTAACTTAGTTCTTATGGAAGTATTTTGTTGAATGATGTTCAAGTCTGTAAAGATTTCAGTTTATTTCCGTGTTCTTGTTTTGGGCCTTACAATTTTATGATACTGCAGTAAACTTGTCTCTGTTGCTAAATAGAAGAGGTTTCCTGAAAATCAGATATCTTTGTTCGTTTTTGAATTAAGTTACTGAAATATCATCGAGTAGAACTTGTGGACCCGGAAAATACATTATTTGGTTGTTTATGGTCAAGGATTTTCATTTGTTTTTTCTTGGTTTTGATAAGTCTTGTATGGCTTTGTACAGTAGTCTGGATTGTGCTGTTATAGTGAACTTTACACCTTTTCTGAAATAAAACAAATGCAGCACTTCTGGTTGCCCTTTTGGTGAGGGGTGTCATTTTGCGCATTATGTTCCTGGTGGATTCAAAGCAATTTCTCAGATGATCACTCCTGCTCTCCCCCCTGGGAATAGGAATCCAGTACCCCCCCAATCCTTTCAAGATGGTGTTTCTCCTCCAGCTGTCAAGACACGTTTGTGCAATAAATTCAACTCAGCCGAAGGCTGCAGGTTCGGTGACAAATGTCATTTTGCTCATGGTGAGTGGGAACTTGGAAGGCCAAATCCGCCACAAGATCACGGTGGAATGGGACAAATGCAACAACCTAGAATGGGTGGTGGATGGAATGTTCCTCCACCACCTAACCATGGACCTGCTGCTAGCTTTGGGGCCTCTGCAACTGCAAAGATTAGTGTCGATGCATCACTTGCAGGCCCCATTATTGGGAAAAATGGTGTCAACTCAAAGAATATTTGTCGAATGACAGGGGCAAGGCTCTCTATAAAAGAACACGAGTCAGACCCTAGCCTGAAGAACATTGAGCTTGAGGGTACTTTTGATCAGATCAATCTAGCTAGTTCGATGGTGCGCGAGTTGATTGCGAATGTTGGCGCTGCCTCTGCCAATAATGCCATGAAGCAGCATCATTCAGCCACGCAGCAATCTTCTGGCTCCGCAAACAACTTTAAGACGAAGCTTTGTGCCAATTTTGCGAAAGGTACTTGTACGTTTAGAGAAAGATGCCATTTTGCCCATGGTGAAAGTGAATTGCGCAAACCAGGTATGTGAATGACCACTTAGCCAGCAGTCTTTGTAGCAGCAGCGGATCTCTTCTTCAAAAAATGTTCTTTTTTTCTGCTTTTCTCTGTTTGAATTATTTGTTAATTTTGTAATACGATATCCGATTACTTTGTAAGACAAGCATTTTTCAACCAAGAAATCGGGAGGAGATTTTGAAAGCTCTGAACTTTAATGGAATCAGCTCGTGCTGTTCTTTGCAACTTCCTTTCTCTACACTCGTTTACAATTGGAATATTGTGTGCATCTTTGTTTCAGTTGTTATTTTGATTGTTTTTGTTCCTTCCAATGTCATCTGAGTGAAGTTTTTTAGCAAATTTATGTACAATGTTTGACATCGCCT

mRNA sequence

GGTTTTCACCTTCACATCTCCCGCTTCTTCATTCCCATTTGATTTCCCCTTCTTCGCTTCCATTACTGGGTACTCTTCTCTCTTCTCTCCCATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGACAAACATGAGAACTCCCGTGCACAGCACGTGACTCACACCCATACATTTTTGCAGTCCACCTCACTCTTTCCATCTTATCATTATTTTGACCTAATTTTCAAATCCGCCCCTATTAGGGTTTTCACCTTCACATCTCCCGCTTCTTCATTCCCATTTGATTTCCCCTTCTTCGCTTCCATTACTGGGTACTCTTCTCTCTTCTCTCCCATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGAAATGGACTCCTTATCTACTGGTTTAGGAAGCAAATCGAGGCCTTGCACAAAGTTTTTCAGCACTTCTGGTTGCCCTTTTGGTGAGGGGTGTCATTTTGCGCATTATGTTCCTGGTGGATTCAAAGCAATTTCTCAGATGATCACTCCTGCTCTCCCCCCTGGGAATAGGAATCCAGTACCCCCCCAATCCTTTCAAGATGGTGTTTCTCCTCCAGCTGTCAAGACACGTTTGTGCAATAAATTCAACTCAGCCGAAGGCTGCAGGTTCGGTGACAAATGTCATTTTGCTCATGGTGAGTGGGAACTTGGAAGGCCAAATCCGCCACAAGATCACGGTGGAATGGGACAAATGCAACAACCTAGAATGGGTGGTGGATGGAATGTTCCTCCACCACCTAACCATGGACCTGCTGCTAGCTTTGGGGCCTCTGCAACTGCAAAGATTAGTGTCGATGCATCACTTGCAGGCCCCATTATTGGGAAAAATGGTGTCAACTCAAAGAATATTTGTCGAATGACAGGGGCAAGGCTCTCTATAAAAGAACACGAGTCAGACCCTAGCCTGAAGAACATTGAGCTTGAGGGTACTTTTGATCAGATCAATCTAGCTAGTTCGATGGTGCGCGAGTTGATTGCGAATGTTGGCGCTGCCTCTGCCAATAATGCCATGAAGCAGCATCATTCAGCCACGCAGCAATCTTCTGGCTCCGCAAACAACTTTAAGACGAAGCTTTGTGCCAATTTTGCGAAAGGTACTTGTACGTTTAGAGAAAGATGCCATTTTGCCCATGGTGAAAGTGAATTGCGCAAACCAGGTATGTGAATGACCACTTAGCCAGCAGTCTTTGTAGCAGCAGCGGATCTCTTCTTCAAAAAATGTTCTTTTTTTCTGCTTTTCTCTGTTTGAATTATTTGTTAATTTTGTAATACGATATCCGATTACTTTGTAAGACAAGCATTTTTCAACCAAGAAATCGGGAGGAGATTTTGAAAGCTCTGAACTTTAATGGAATCAGCTCGTGCTGTTCTTTGCAACTTCCTTTCTCTACACTCGTTTACAATTGGAATATTGTGTGCATCTTTGTTTCAGTTGTTATTTTGATTGTTTTTGTTCCTTCCAATGTCATCTGAGTGAAGTTTTTTAGCAAATTTATGTACAATGTTTGACATCGCCT

Coding sequence (CDS)

ATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGACAAACATGAGAACTCCCGTGCACAGCACGTGACTCACACCCATACATTTTTGCAGTCCACCTCACTCTTTCCATCTTATCATTATTTTGACCTAATTTTCAAATCCGCCCCTATTAGGGTTTTCACCTTCACATCTCCCGCTTCTTCATTCCCATTTGATTTCCCCTTCTTCGCTTCCATTACTGGGTACTCTTCTCTCTTCTCTCCCATGGACATCGACGCCGTTCGCAAGAGGGAAAGAACTGAAACCGCCTTCAATGGAAACGGCAGCTTTAAGAAGCTCAAACCAGAAATGGACTCCTTATCTACTGGTTTAGGAAGCAAATCGAGGCCTTGCACAAAGTTTTTCAGCACTTCTGGTTGCCCTTTTGGTGAGGGGTGTCATTTTGCGCATTATGTTCCTGGTGGATTCAAAGCAATTTCTCAGATGATCACTCCTGCTCTCCCCCCTGGGAATAGGAATCCAGTACCCCCCCAATCCTTTCAAGATGGTGTTTCTCCTCCAGCTGTCAAGACACGTTTGTGCAATAAATTCAACTCAGCCGAAGGCTGCAGGTTCGGTGACAAATGTCATTTTGCTCATGGTGAGTGGGAACTTGGAAGGCCAAATCCGCCACAAGATCACGGTGGAATGGGACAAATGCAACAACCTAGAATGGGTGGTGGATGGAATGTTCCTCCACCACCTAACCATGGACCTGCTGCTAGCTTTGGGGCCTCTGCAACTGCAAAGATTAGTGTCGATGCATCACTTGCAGGCCCCATTATTGGGAAAAATGGTGTCAACTCAAAGAATATTTGTCGAATGACAGGGGCAAGGCTCTCTATAAAAGAACACGAGTCAGACCCTAGCCTGAAGAACATTGAGCTTGAGGGTACTTTTGATCAGATCAATCTAGCTAGTTCGATGGTGCGCGAGTTGATTGCGAATGTTGGCGCTGCCTCTGCCAATAATGCCATGAAGCAGCATCATTCAGCCACGCAGCAATCTTCTGGCTCCGCAAACAACTTTAAGACGAAGCTTTGTGCCAATTTTGCGAAAGGTACTTGTACGTTTAGAGAAAGATGCCATTTTGCCCATGGTGAAAGTGAATTGCGCAAACCAGGTATGTGA

Protein sequence

MDIDAVRKRERTETAFNGNGSFKKLKPDKHENSRAQHVTHTHTFLQSTSLFPSYHYFDLIFKSAPIRVFTFTSPASSFPFDFPFFASITGYSSLFSPMDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPGGFKAISQMITPALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCHFAHGEWELGRPNPPQDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPGM

Homology

[Close]

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot
Match: C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 4.7e-83
Identity = 170/298 (57.05%), Postives = 212/298 (71.14%), Query Frame = 1


Query: 104 RKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPG 163
           RKR + + A   NG+  K   E +S  TG+GSKS+PCTKFFSTSGCPFGEGCHF H+ PG
Sbjct: 6   RKRGKPDGA---NGAGGKRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPG 65

Query: 164 GFKAISQMIT---PAL-PPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCH 223
           G++A+++M     PA+ PP  R P+   +  DG   P VKTRLCNK+N+AEGC++GDKCH
Sbjct: 66  GYQAVAKMTNLGGPAIAPPPGRMPMG-NAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCH 125

Query: 224 FAHGEWELGRPNPPQDHGGMGQMQQPRMGGGWNVPPPPNHGPA--ASFGASATAKISVDA 283
           FAHGE ELG+P        M     PR  G +  PP P+   +  ASFGASATAKISVDA
Sbjct: 126 FAHGERELGKPMLMDS--SMPPPMGPRPTGHFAPPPMPSPAMSTPASFGASATAKISVDA 185

Query: 284 SLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIA 343
           SLAG IIG+ GVN+K I R+TGA+L+I++HESD +LKNIELEGTFDQI  AS+MVRELI 
Sbjct: 186 SLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIV 245

Query: 344 NVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRK 396
           ++G  +     K+    + +  G  +NFKTKLC NF KG+CTF +RCHFAHGE+ELRK
Sbjct: 246 SIGGGAPPQG-KKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRK 296

[Close]

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot
Match: C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 4.0e-82
Identity = 168/304 (55.26%), Postives = 206/304 (67.76%), Query Frame = 1


Query: 102 AVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYV 161
           A RKR R +TA NG  +  K   E +S  TGL SK +PCTKFFST GCPFGEGCHF+H+V
Sbjct: 6   AARKRSRPDTA-NGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFV 65

Query: 162 PGGFKAISQMIT---PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKC 221
           PGG++A+++ +    PA+P   R P+   +  +     + KTR+C K+N+AEGC+FGDKC
Sbjct: 66  PGGYQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKC 125

Query: 222 HFAHGEWELGRPNPPQDHGGMGQMQQPRMGGGWNVPPPPNHGP-AASFGASATAKISVDA 281
           HFAHGE ELG+P        M      R GG    PPP   GP A +FGASATAKISVDA
Sbjct: 126 HFAHGERELGKPAYMSHESAMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISVDA 185

Query: 282 SLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIA 341
           SLAG IIGK GVN+K ICR+TG +LSI++HESD +LKNIELEG FDQI  AS+MV ELIA
Sbjct: 186 SLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGELIA 245

Query: 342 NVGAASANNAMKQHHSAT------QQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGES 396
            +  ++   A K   SA       +   G  +N+KTKLC NF KGTCTF +RCHFAHGE+
Sbjct: 246 TISPSTP--AKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFAHGEN 305

[Close]

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot
Match: C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.7e-75
Identity = 159/291 (54.64%), Postives = 201/291 (69.07%), Query Frame = 1


Query: 116 NGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPGGFKAISQMITP- 175
           NG+ K+ +   +S   G+GSK +PCTKFFSTSGCPFG  CHF H  PGG++A ++M +  
Sbjct: 15  NGAAKRARAS-ESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMTSHG 74

Query: 176 ----ALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCHFAHGEWELGRP 235
               A PPG R P+ P +  +G    +VKTR+CNK+N+AEGC++G KCHFAHGE ELG+P
Sbjct: 75  GTAVAAPPG-RMPLGPGA-PNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKP 134

Query: 236 -----NPPQDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDASLAGPIIG 295
                + P   G M   + P M G   VPP       ++FGASATAKISVDASLAG IIG
Sbjct: 135 MLLDNSMPHPMGSM-PFEAPPMPGPDIVPP-------STFGASATAKISVDASLAGGIIG 194

Query: 296 KNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIANVGAASAN 355
           K G N+K+I RMTGA+L+I+++ES+P+LKNIELEGTFDQI  AS+MV ELI  +   S N
Sbjct: 195 KGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRI---SGN 254

Query: 356 NAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRKP 397
               ++      + G  +NFKTKLC NF KG+CTF +RCHFAHGESELRKP
Sbjct: 255 APPAKNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRKP 291

[Close]

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot
Match: C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g06770 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-44
Identity = 101/207 (48.79%), Postives = 128/207 (61.84%), Query Frame = 1


Query: 199 KTRLCNKFNSAEGCRFGDKCHFAH-------GEWELGRPNPPQDHGGMGQMQQPRMGGGW 258
           K++ C KF S  GC FGD CHF H          ++    PP              GG +
Sbjct: 38  KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRF 97

Query: 259 NVPPPPNHGPAASFGASATAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDP 318
           +    P  GP + FGAS T+KISVDASLAG IIGK G++SK ICR TGA+LSIK+HE DP
Sbjct: 98  SGRGDPGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDP 157

Query: 319 SLKNIELEGTFDQINLASSMVRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCA 378
           +LK IELEGTF+QIN+AS MVRELI  +G+        Q     +      +N+KTK+C 
Sbjct: 158 NLKIIELEGTFEQINVASGMVRELIGRLGSVK----KPQGIGGPEGKPHPGSNYKTKICD 217

Query: 379 NFAKGTCTFRERCHFAHGESELRKPGM 399
            ++KG CT+ +RCHFAHGESELR+ G+
Sbjct: 218 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot
Match: C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.9e-41
Identity = 101/217 (46.54%), Postives = 129/217 (59.45%), Query Frame = 1


Query: 199 KTRLCNKFNSAEGCRFGDKCHFAHGEWELGRPNPPQDHGGMG--------QMQQPRMGGG 258
           K++ C KF S  GC FG+ CHF H  +  G  N       MG         MQ    GG 
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLH--YVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGR 97

Query: 259 WNVPPPPNHGPAASFGASATAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESD 318
           ++       G  ++FG SATA+ SVDASLAG IIGK GV+SK ICR TG +LSI++HE D
Sbjct: 98  FSGRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERD 157

Query: 319 PSLKNIELEGTFDQINLASSMVRELIANVGAASANNAMKQHHSATQQSSGS--------- 378
           P+LKNI LEGT +QI+ AS+MV++LI  +     N+A K+         G          
Sbjct: 158 PNLKNIVLEGTLEQISEASAMVKDLIGRL-----NSAAKKPPGGGLGGGGGMGSEGKPHP 217

Query: 379 ANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPGM 399
            +NFKTK+C  F+KG CTF +RCHFAHGE+ELRK G+
Sbjct: 218 GSNFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]

BLAST of Cp4.1LG18g01440 vs. TrEMBL
Match: A0A0A0M2L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605650 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 2.2e-156
Identity = 279/309 (90.29%), Postives = 285/309 (92.23%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           MD+D  RKRERTETA NGNG FKK KPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF
Sbjct: 1   MDLDGARKRERTETALNGNGGFKKSKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMITPALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDK 217
           AHYVPGG K+ISQMI+PALPPG RNP PPQSF DGV PPAVKTRLCNKFNSAEGCRFGDK
Sbjct: 61  AHYVPGGVKSISQMISPALPPGIRNPAPPQSFPDGV-PPAVKTRLCNKFNSAEGCRFGDK 120

Query: 218 CHFAHGEWELGRPNPPQDHGGMGQ--MQQPRMGGGWNV-PPPPNHGPAASFGASATAKIS 277
           C++AHGEWELGRPNPPQDHGGMG   MQQPRMGGGWN  PPPPNHGPAASFGASATAKIS
Sbjct: 121 CYYAHGEWELGRPNPPQDHGGMGPGPMQQPRMGGGWNAPPPPPNHGPAASFGASATAKIS 180

Query: 278 VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRE 337
           VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDP+LKNIELEGTFDQINLASSMVRE
Sbjct: 181 VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPNLKNIELEGTFDQINLASSMVRE 240

Query: 338 LIANVGAASANNAMK-----QHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHG 397
           LIANVGAASANNAMK     QHHS  QQSSGSANNFKTKLCANF KG CTFRERCHFAHG
Sbjct: 241 LIANVGAASANNAMKQHQQHQHHSGMQQSSGSANNFKTKLCANFTKGACTFRERCHFAHG 300

Query: 398 ESELRKPGM 399
           ESELRKPGM
Sbjct: 301 ESELRKPGM 308

[Close]

BLAST of Cp4.1LG18g01440 vs. TrEMBL
Match: W9QK76_9ROSA (Zinc finger CCCH domain-containing protein 14 OS=Morus notabilis GN=L484_018413 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 3.9e-113
Identity = 216/306 (70.59%), Postives = 244/306 (79.74%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           M+    RKR R + + NGNGSFKK +PE++SLSTG+GSKS+PCTKFFSTSGCPFGEGCHF
Sbjct: 1   MEFGGGRKRGRHDASLNGNGSFKKSRPELESLSTGIGSKSKPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMI----TPALPPGNRNPV-PPQSFQDGVSPPAVKTRLCNKFNSAEGC 217
            HYVPGGFKA+SQMI      ALPP  RN   PP SF DG SPPAVKTRLCNK+N+AEGC
Sbjct: 61  LHYVPGGFKAVSQMIHIGGNQALPPAARNSAAPPPSFPDGSSPPAVKTRLCNKYNTAEGC 120

Query: 218 RFGDKCHFAHGEWELGRPNPPQ--DHG-GMGQMQQPRMGGGWNVPPPPNHGPAASFGASA 277
           +FGDKCHFAHGEWELG+P  P   DH  GMG +  P   GG   PPPP HGPAASFG S+
Sbjct: 121 KFGDKCHFAHGEWELGKPTAPSYDDHQRGMGPV--PGRIGGRMEPPPPAHGPAASFGLSS 180

Query: 278 TAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLAS 337
           TAKISV ASLAG IIGKNGVNSK ICR+TGA+LSI++HESDP+L+NIELEGTFDQI  A+
Sbjct: 181 TAKISVAASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPNLRNIELEGTFDQIKQAT 240

Query: 338 SMVRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHG 396
           +MV+ELI NVG+A A N MK HH      SG+ANNFKTKLC NFAKG+CTF +RCHFAHG
Sbjct: 241 AMVQELILNVGSA-AGNPMKGHHG--MGHSGAANNFKTKLCENFAKGSCTFGDRCHFAHG 300

[Close]

BLAST of Cp4.1LG18g01440 vs. TrEMBL
Match: I1LFK3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G296700 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 5.3e-110
Identity = 211/301 (70.10%), Postives = 238/301 (79.07%), Query Frame = 1


Query: 104 RKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPG 163
           RKR R E AFN NG  KK +PEMDS  TGLGSKS+PCTKFFSTSGCPFGEGCHF HYVPG
Sbjct: 3   RKRGRHEAAFNFNGGAKKSRPEMDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPG 62

Query: 164 GFKAISQMIT----PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCH 223
           GFKA+SQ+I     P +P   RNPVPP SF DG SPP VKTRLCNKFN+AEGC+FGDKCH
Sbjct: 63  GFKAVSQLINVGSNPVIPQVGRNPVPP-SFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCH 122

Query: 224 FAHGEWELGRPNPP--QDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDA 283
           FAHGEWELGRP  P  +D   MGQM   R+GG    PP P HG AASFGASATAKIS++A
Sbjct: 123 FAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVE-PPHPAHGAAASFGASATAKISINA 182

Query: 284 SLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIA 343
           SLAG +IGKNGVNSK ICR+TGA+LSI++H++DP+L+NIELEG+FDQI  AS+MV E+I 
Sbjct: 183 SLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVIL 242

Query: 344 NVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPG 399
           NV +AS    MK   S T Q+S  A+NFKTKLC NFAKG+CTF ERCHFAHG  ELRK G
Sbjct: 243 NVSSAS-GPPMK---SFTSQNSAPASNFKTKLCENFAKGSCTFGERCHFAHGNDELRKSG 297

[Close]

BLAST of Cp4.1LG18g01440 vs. TrEMBL
Match: A0A067JK64_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26709 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.2e-109
Identity = 212/311 (68.17%), Postives = 237/311 (76.21%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           MD   VRKR R E   NGNG FKK + EM+S STG+GSKS+PCTKFFSTSGCPFGEGCHF
Sbjct: 1   MDYGGVRKRGRPEATLNGNGGFKKSRQEMESFSTGIGSKSKPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMIT----PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCR 217
            HYVPGGFKA+SQM+      ALPP NRN   P SF DG SPPAVKTRLCNK+N+AEGC+
Sbjct: 61  LHYVPGGFKAVSQMLNIGSNQALPPANRNSGVPPSFPDGSSPPAVKTRLCNKYNTAEGCK 120

Query: 218 FGDKCHFAHGEWELGRPNPP--QDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATA 277
           FGDKCHFAHGEWELG+P  P  +D   MG +  P   G    PP    G  ASFGA+ATA
Sbjct: 121 FGDKCHFAHGEWELGKPTGPSYEDPRSMGPI--PGRMGRQMEPPHQGLGAGASFGANATA 180

Query: 278 KISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSM 337
           KIS+DASLAG IIGKNGVNSK ICR+TGA+LSI+EHE+DP+L+NIE EGTFDQIN ASSM
Sbjct: 181 KISIDASLAGAIIGKNGVNSKQICRLTGAKLSIREHETDPNLRNIEFEGTFDQINQASSM 240

Query: 338 VRELIANVGAASA----NNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFA 397
           VRELI NV  ASA    N AM  H SA+Q       NFKTKLC NF KG+CTF +RCHFA
Sbjct: 241 VRELIGNVSQASAPPMKNPAM--HSSASQ-------NFKTKLCENFTKGSCTFGDRCHFA 300

Query: 398 HGESELRKPGM 399
           HGE++LRKPGM
Sbjct: 301 HGENDLRKPGM 300

[Close]

BLAST of Cp4.1LG18g01440 vs. TrEMBL
Match: A0A0B2RZH9_GLYSO (Zinc finger CCCH domain-containing protein 14 OS=Glycine soja GN=glysoja_013482 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 1.2e-109
Identity = 210/301 (69.77%), Postives = 238/301 (79.07%), Query Frame = 1


Query: 104 RKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPG 163
           RKR R E AFN NG  KK +PEMDS  TGLGSKS+PCTKFFSTSGCPFGEGCHF HYVPG
Sbjct: 3   RKRGRHEAAFNFNGGAKKSRPEMDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPG 62

Query: 164 GFKAISQMIT----PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCH 223
           GFKA+SQ+I     P +P   RNPVPP SF DG SPP VKTRLCNKFN+AEGC+FGDKCH
Sbjct: 63  GFKAVSQLINVGSNPVIPQVGRNPVPP-SFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCH 122

Query: 224 FAHGEWELGRPNPP--QDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDA 283
           FAHGEWELGRP  P  +D   +GQM   R+GG    PP P HG AASFGASATAKIS++A
Sbjct: 123 FAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVE-PPHPAHGAAASFGASATAKISINA 182

Query: 284 SLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIA 343
           SLAG +IGKNGVNSK ICR+TGA+LSI++H++DP+L+NIELEG+FDQI  AS+MV E+I 
Sbjct: 183 SLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVIL 242

Query: 344 NVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPG 399
           NV +AS    MK   S T Q+S  A+NFKTKLC NFAKG+CTF ERCHFAHG  ELRK G
Sbjct: 243 NVSSAS-GPPMK---SFTSQNSAPASNFKTKLCENFAKGSCTFGERCHFAHGNDELRKSG 297

[Close]

BLAST of Cp4.1LG18g01440 vs. TAIR10
Match: AT5G06770.1 (AT5G06770.1 KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 181.8 bits (460), Expect = 8.3e-46
Identity = 101/207 (48.79%), Postives = 128/207 (61.84%), Query Frame = 1


Query: 199 KTRLCNKFNSAEGCRFGDKCHFAH-------GEWELGRPNPPQDHGGMGQMQQPRMGGGW 258
           K++ C KF S  GC FGD CHF H          ++    PP              GG +
Sbjct: 38  KSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGRF 97

Query: 259 NVPPPPNHGPAASFGASATAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDP 318
           +    P  GP + FGAS T+KISVDASLAG IIGK G++SK ICR TGA+LSIK+HE DP
Sbjct: 98  SGRGDPGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDP 157

Query: 319 SLKNIELEGTFDQINLASSMVRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCA 378
           +LK IELEGTF+QIN+AS MVRELI  +G+        Q     +      +N+KTK+C 
Sbjct: 158 NLKIIELEGTFEQINVASGMVRELIGRLGSVK----KPQGIGGPEGKPHPGSNYKTKICD 217

Query: 379 NFAKGTCTFRERCHFAHGESELRKPGM 399
            ++KG CT+ +RCHFAHGESELR+ G+
Sbjct: 218 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Cp4.1LG18g01440 vs. TAIR10
Match: AT3G12130.1 (AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-42
Identity = 101/217 (46.54%), Postives = 129/217 (59.45%), Query Frame = 1


Query: 199 KTRLCNKFNSAEGCRFGDKCHFAHGEWELGRPNPPQDHGGMG--------QMQQPRMGGG 258
           K++ C KF S  GC FG+ CHF H  +  G  N       MG         MQ    GG 
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLH--YVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGR 97

Query: 259 WNVPPPPNHGPAASFGASATAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESD 318
           ++       G  ++FG SATA+ SVDASLAG IIGK GV+SK ICR TG +LSI++HE D
Sbjct: 98  FSGRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERD 157

Query: 319 PSLKNIELEGTFDQINLASSMVRELIANVGAASANNAMKQHHSATQQSSGS--------- 378
           P+LKNI LEGT +QI+ AS+MV++LI  +     N+A K+         G          
Sbjct: 158 PNLKNIVLEGTLEQISEASAMVKDLIGRL-----NSAAKKPPGGGLGGGGGMGSEGKPHP 217

Query: 379 ANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPGM 399
            +NFKTK+C  F+KG CTF +RCHFAHGE+ELRK G+
Sbjct: 218 GSNFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]

BLAST of Cp4.1LG18g01440 vs. TAIR10
Match: AT2G35430.1 (AT2G35430.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-08
Identity = 44/135 (32.59%), Postives = 60/135 (44.44%), Query Frame = 1


Query: 112 AFNGNGSFKKLKPEMDSLSTGLGS---KSRPCTKFFSTSGCPFG-EGCHFAHYVPGGFKA 171
           A N +G+    K    S S+ +G    K++ C KF + + CP+    CHFAH       A
Sbjct: 46  AINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGT-CPYSASSCHFAH------SA 105

Query: 172 ISQMITPALPPGNRNPVPP-----QSFQDGVSP----------PAVKTRLCNKFNSAEGC 228
               + P  PP  +  V       +SF   + P          P  KTR+CNK+ +   C
Sbjct: 106 EELRLPPPPPPNWQETVTEASRNRESFAVSLGPRGNVAQTLKSPNWKTRICNKWQTTGYC 165

[Close]

BLAST of Cp4.1LG18g01440 vs. TAIR10
Match: AT3G19360.1 (AT3G19360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 49/162 (30.25%), Postives = 65/162 (40.12%), Query Frame = 1


Query: 140 CTKFFSTSGCPFGEGCHFAHYVPGGFK----------AISQMITPALPPG---------N 199
           C KF     CP+G+ C+F H     F+           IS   T A  P          N
Sbjct: 189 CRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVN 248

Query: 200 RN---PVPPQSFQDGVSPPAV-KTRLCNKFNSAEGCRFGDKCHFAHGEWELGRPNPPQDH 259
           R    PVP      GV      KTRLC KF+    C FGDKCHFAHG+ EL        H
Sbjct: 249 RQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL--------H 308

Query: 260 GGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDAS 279
             +G+++   M    +V          +F      +++ D+S
Sbjct: 309 NSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSS 342

[Close]

BLAST of Cp4.1LG18g01440 vs. NCBI nr
Match: gi|449462589|ref|XP_004149023.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis sativus])

HSP 1 Score: 560.1 bits (1442), Expect = 3.2e-156
Identity = 279/309 (90.29%), Postives = 285/309 (92.23%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           MD+D  RKRERTETA NGNG FKK KPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF
Sbjct: 1   MDLDGARKRERTETALNGNGGFKKSKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMITPALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDK 217
           AHYVPGG K+ISQMI+PALPPG RNP PPQSF DGV PPAVKTRLCNKFNSAEGCRFGDK
Sbjct: 61  AHYVPGGVKSISQMISPALPPGIRNPAPPQSFPDGV-PPAVKTRLCNKFNSAEGCRFGDK 120

Query: 218 CHFAHGEWELGRPNPPQDHGGMGQ--MQQPRMGGGWNV-PPPPNHGPAASFGASATAKIS 277
           C++AHGEWELGRPNPPQDHGGMG   MQQPRMGGGWN  PPPPNHGPAASFGASATAKIS
Sbjct: 121 CYYAHGEWELGRPNPPQDHGGMGPGPMQQPRMGGGWNAPPPPPNHGPAASFGASATAKIS 180

Query: 278 VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRE 337
           VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDP+LKNIELEGTFDQINLASSMVRE
Sbjct: 181 VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPNLKNIELEGTFDQINLASSMVRE 240

Query: 338 LIANVGAASANNAMK-----QHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHG 397
           LIANVGAASANNAMK     QHHS  QQSSGSANNFKTKLCANF KG CTFRERCHFAHG
Sbjct: 241 LIANVGAASANNAMKQHQQHQHHSGMQQSSGSANNFKTKLCANFTKGACTFRERCHFAHG 300

Query: 398 ESELRKPGM 399
           ESELRKPGM
Sbjct: 301 ESELRKPGM 308

[Close]

BLAST of Cp4.1LG18g01440 vs. NCBI nr
Match: gi|659100479|ref|XP_008451117.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo])

HSP 1 Score: 559.3 bits (1440), Expect = 5.4e-156
Identity = 278/310 (89.68%), Postives = 285/310 (91.94%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           MD+D  RKRERTETA NGNG FKK KPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF
Sbjct: 1   MDLDGARKRERTETALNGNGGFKKSKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMITPALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDK 217
           AHYVPGG K+ISQMI+PALPPG RNP PPQSF DGV PPAVKTRLCNKFNSAEGCRFGDK
Sbjct: 61  AHYVPGGVKSISQMISPALPPGIRNPAPPQSFPDGV-PPAVKTRLCNKFNSAEGCRFGDK 120

Query: 218 CHFAHGEWELGRPNPPQDHGGMGQ--MQQPRMGGGWNV-PPPPNHGPAASFGASATAKIS 277
           C++AHGEWELGRPNPPQDHGGMG   MQQPRMGGGWN  PPPPNHGPAASFGASATAKIS
Sbjct: 121 CYYAHGEWELGRPNPPQDHGGMGPGPMQQPRMGGGWNAPPPPPNHGPAASFGASATAKIS 180

Query: 278 VDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRE 337
           VDASLAGPIIGKNG+NSKNICRMTGARLSIKEHESDP+LKNIELEGTFDQINLASSMVRE
Sbjct: 181 VDASLAGPIIGKNGINSKNICRMTGARLSIKEHESDPNLKNIELEGTFDQINLASSMVRE 240

Query: 338 LIANVGAASANNAMK------QHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAH 397
           LIANVGAASANNAMK      QHHS  QQSSGSANNFKTKLCANF KG CTFRERCHFAH
Sbjct: 241 LIANVGAASANNAMKQHQHQHQHHSGMQQSSGSANNFKTKLCANFTKGACTFRERCHFAH 300

Query: 398 GESELRKPGM 399
           GESELRKPGM
Sbjct: 301 GESELRKPGM 309

[Close]

BLAST of Cp4.1LG18g01440 vs. NCBI nr
Match: gi|703065194|ref|XP_010087387.1| (Zinc finger CCCH domain-containing protein 14 [Morus notabilis])

HSP 1 Score: 416.4 bits (1069), Expect = 5.7e-113
Identity = 216/306 (70.59%), Postives = 244/306 (79.74%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           M+    RKR R + + NGNGSFKK +PE++SLSTG+GSKS+PCTKFFSTSGCPFGEGCHF
Sbjct: 1   MEFGGGRKRGRHDASLNGNGSFKKSRPELESLSTGIGSKSKPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMI----TPALPPGNRNPV-PPQSFQDGVSPPAVKTRLCNKFNSAEGC 217
            HYVPGGFKA+SQMI      ALPP  RN   PP SF DG SPPAVKTRLCNK+N+AEGC
Sbjct: 61  LHYVPGGFKAVSQMIHIGGNQALPPAARNSAAPPPSFPDGSSPPAVKTRLCNKYNTAEGC 120

Query: 218 RFGDKCHFAHGEWELGRPNPPQ--DHG-GMGQMQQPRMGGGWNVPPPPNHGPAASFGASA 277
           +FGDKCHFAHGEWELG+P  P   DH  GMG +  P   GG   PPPP HGPAASFG S+
Sbjct: 121 KFGDKCHFAHGEWELGKPTAPSYDDHQRGMGPV--PGRIGGRMEPPPPAHGPAASFGLSS 180

Query: 278 TAKISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLAS 337
           TAKISV ASLAG IIGKNGVNSK ICR+TGA+LSI++HESDP+L+NIELEGTFDQI  A+
Sbjct: 181 TAKISVAASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPNLRNIELEGTFDQIKQAT 240

Query: 338 SMVRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHG 396
           +MV+ELI NVG+A A N MK HH      SG+ANNFKTKLC NFAKG+CTF +RCHFAHG
Sbjct: 241 AMVQELILNVGSA-AGNPMKGHHG--MGHSGAANNFKTKLCENFAKGSCTFGDRCHFAHG 300

[Close]

BLAST of Cp4.1LG18g01440 vs. NCBI nr
Match: gi|1009118595|ref|XP_015875946.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Ziziphus jujuba])

HSP 1 Score: 412.1 bits (1058), Expect = 1.1e-111
Identity = 211/307 (68.73%), Postives = 237/307 (77.20%), Query Frame = 1


Query: 98  MDIDAVRKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHF 157
           MD    RKR R E A NGNG  KK K E++S S+G+GSKS+PCTKFFSTSGCPFGEGCHF
Sbjct: 1   MDFGGGRKRGRNEAALNGNGGLKKSKSELESFSSGIGSKSKPCTKFFSTSGCPFGEGCHF 60

Query: 158 AHYVPGGFKAISQMIT----PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCR 217
            HYVPGG KA+SQMI       LPP  RN   P SF DG SPPAVKTRLCNKFNSAEGC+
Sbjct: 61  LHYVPGGIKAVSQMINLGVNQTLPPAARNSAVPPSFPDGSSPPAVKTRLCNKFNSAEGCK 120

Query: 218 FGDKCHFAHGEWELGRPNPP--QDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATA 277
           FGDKCHFAHGEWELG+PN P  +D   MG +  P   GG   PP  +HG AASFGAS+T 
Sbjct: 121 FGDKCHFAHGEWELGKPNAPSYEDPRAMGPL--PGRMGGRIEPPQQSHGAAASFGASSTC 180

Query: 278 KISVDASLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSM 337
           K+SVDASLAG IIGKNGVNSK ICR+TGA+LSI++HESDP+L+NIELEG+FDQI  A++M
Sbjct: 181 KVSVDASLAGAIIGKNGVNSKQICRVTGAKLSIRDHESDPNLRNIELEGSFDQIKQANAM 240

Query: 338 VRELIANVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGES 397
           VRELIANVG + A N MK H   +   SG  NNFKTKLC NFAKG+CTF ERCHFAHG  
Sbjct: 241 VRELIANVG-SGAGNPMKNH---SMGGSGPGNNFKTKLCENFAKGSCTFGERCHFAHGAE 300

Query: 398 ELRKPGM 399
           ELRKPG+
Sbjct: 301 ELRKPGI 301

[Close]

BLAST of Cp4.1LG18g01440 vs. NCBI nr
Match: gi|356536568|ref|XP_003536809.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 [Glycine max])

HSP 1 Score: 406.0 bits (1042), Expect = 7.7e-110
Identity = 211/301 (70.10%), Postives = 238/301 (79.07%), Query Frame = 1


Query: 104 RKRERTETAFNGNGSFKKLKPEMDSLSTGLGSKSRPCTKFFSTSGCPFGEGCHFAHYVPG 163
           RKR R E AFN NG  KK +PEMDS  TGLGSKS+PCTKFFSTSGCPFGEGCHF HYVPG
Sbjct: 3   RKRGRHEAAFNFNGGAKKSRPEMDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPG 62

Query: 164 GFKAISQMIT----PALPPGNRNPVPPQSFQDGVSPPAVKTRLCNKFNSAEGCRFGDKCH 223
           GFKA+SQ+I     P +P   RNPVPP SF DG SPP VKTRLCNKFN+AEGC+FGDKCH
Sbjct: 63  GFKAVSQLINVGSNPVIPQVGRNPVPP-SFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCH 122

Query: 224 FAHGEWELGRPNPP--QDHGGMGQMQQPRMGGGWNVPPPPNHGPAASFGASATAKISVDA 283
           FAHGEWELGRP  P  +D   MGQM   R+GG    PP P HG AASFGASATAKIS++A
Sbjct: 123 FAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVE-PPHPAHGAAASFGASATAKISINA 182

Query: 284 SLAGPIIGKNGVNSKNICRMTGARLSIKEHESDPSLKNIELEGTFDQINLASSMVRELIA 343
           SLAG +IGKNGVNSK ICR+TGA+LSI++H++DP+L+NIELEG+FDQI  AS+MV E+I 
Sbjct: 183 SLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVIL 242

Query: 344 NVGAASANNAMKQHHSATQQSSGSANNFKTKLCANFAKGTCTFRERCHFAHGESELRKPG 399
           NV +AS    MK   S T Q+S  A+NFKTKLC NFAKG+CTF ERCHFAHG  ELRK G
Sbjct: 243 NVSSAS-GPPMK---SFTSQNSAPASNFKTKLCENFAKGSCTFGERCHFAHGNDELRKSG 297

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g01440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H14_ORYSJ	4.7e-83	57.05	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN...	[more]
C3H31_ORYSJ	4.0e-82	55.26	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN...	[more]
C3H44_ORYSJ	4.7e-75	54.64	Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN...	[more]
C3H52_ARATH	1.5e-44	48.79	Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g067...	[more]
C3H36_ARATH	9.9e-41	46.54	Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g121...	[more]

BLAST of Cp4.1LG18g01440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2L9_CUCSA	2.2e-156	90.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G605650 PE=4 SV=1	[more]
W9QK76_9ROSA	3.9e-113	70.59	Zinc finger CCCH domain-containing protein 14 OS=Morus notabilis GN=L484_018413 ...	[more]
I1LFK3_SOYBN	5.3e-110	70.10	Uncharacterized protein OS=Glycine max GN=GLYMA_10G296700 PE=4 SV=1	[more]
A0A067JK64_JATCU	1.2e-109	68.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26709 PE=4 SV=1	[more]
A0A0B2RZH9_GLYSO	1.2e-109	69.77	Zinc finger CCCH domain-containing protein 14 OS=Glycine soja GN=glysoja_013482 ...	[more]

BLAST of Cp4.1LG18g01440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06770.1	8.3e-46	48.79	KH domain-containing protein / zinc finger (CCCH type) family protei...	[more]
AT3G12130.1	5.6e-42	46.54	KH domain-containing protein / zinc finger (CCCH type) family protei...	[more]
AT2G35430.1	1.8e-08	32.59	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G19360.1	1.2e-07	30.25	Zinc finger (CCCH-type) family protein	[more]

BLAST of Cp4.1LG18g01440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462589\|ref\|XP_004149023.1\|	3.2e-156	90.29	PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis sativus]	[more]
gi\|659100479\|ref\|XP_008451117.1\|	5.4e-156	89.68	PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo]	[more]
gi\|703065194\|ref\|XP_010087387.1\|	5.7e-113	70.59	Zinc finger CCCH domain-containing protein 14 [Morus notabilis]	[more]
gi\|1009118595\|ref\|XP_015875946.1\|	1.1e-111	68.73	PREDICTED: zinc finger CCCH domain-containing protein 14-like [Ziziphus jujuba]	[more]
gi\|356536568\|ref\|XP_003536809.1\|	7.7e-110	70.10	PREDICTED: zinc finger CCCH domain-containing protein 14 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR004087	KH_dom
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g01440.1	Cp4.1LG18g01440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 136..159 score: 1.7E-7coord: 363..396 score: 9.9E-15coord: 194..228 score: 1.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 199..224 score: 5.7E-6coord: 365..390 score: 8.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 134..161 score: 1.6coord: 197..224 score: 0.001coord: 364..390 score: 9.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 197..225 score: 13.657coord: 134..162 score: 12.211coord: 364..391 score: 15
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 135..161 score: 9.81E-6coord: 195..228 score: 6.02E-8coord: 364..394 score: 5.2
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 267..337 score: 4.8
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 267..338 score: 1.1
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 270..334 score: 5.
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 268..332 score: 13
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 258..338 score: 1.61
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 197..396 score: 4.3E
None	No IPR available	PANTHER	PTHR10288:SF154	SUBFAMILY NOT NAMED	coord: 197..396 score: 4.3E
None	No IPR available	PFAM	PF14608	zf-CCCH_2	coord: 142..159 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g01440	Cucsa.142970	Cucumber (Gy14) v1	cgycpeB0382
Cp4.1LG18g01440	CmaCh10G009650	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g01440	CmoCh10G010130	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g01440	CmoCh11G008320	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g01440	Cla004787	Watermelon (97103) v1	cpewmB355
Cp4.1LG18g01440	Csa1G605650	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g01440	MELO3C015665	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g01440	ClCG03G013750	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g01440	CSPI01G29900	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g01440	Lsi06G004670	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g01440	MELO3C015665.2	Melon (DHL92) v3.6.1	cpemedB387
Cp4.1LG18g01440	CsaV3_1G042320	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g01440	Bhi02G001361	Wax gourd	cpewgoB0476
Cp4.1LG18g01440	CsGy1G029240	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g01440	Carg16962	Silver-seed gourd	carcpeB0655
Cp4.1LG18g01440	Carg17993	Silver-seed gourd	carcpeB0247

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g01440	Cp4.1LG04g11810	Cucurbita pepo (Zucchini)	cpecpeB363

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g01440	Cucurbita pepo (Zucchini)	cpecpeB287
Cp4.1LG18g01440	Cucurbita pepo (Zucchini)	cpecpeB328
Cp4.1LG18g01440	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG18g01440	Cucumber (Gy14) v1	cgycpeB0049
Cp4.1LG18g01440	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g01440	Cucurbita maxima (Rimu)	cmacpeB397
Cp4.1LG18g01440	Cucurbita maxima (Rimu)	cmacpeB567
Cp4.1LG18g01440	Cucurbita maxima (Rimu)	cmacpeB632
Cp4.1LG18g01440	Wild cucumber (PI 183967)	cpecpiB377
Cp4.1LG18g01440	Bottle gourd (USVL1VR-Ls)	cpelsiB293
Cp4.1LG18g01440	Melon (DHL92) v3.5.1	cpemeB327
Cp4.1LG18g01440	Cucumber (Gy14) v2	cgybcpeB939
Cp4.1LG18g01440	Melon (DHL92) v3.6.1	cpemedB385
Cp4.1LG18g01440	Silver-seed gourd	carcpeB0735
Cp4.1LG18g01440	Silver-seed gourd	carcpeB1276
Cp4.1LG18g01440	Cucumber (Chinese Long) v3	cpecucB0469
Cp4.1LG18g01440	Wax gourd	cpewgoB0455
Cp4.1LG18g01440	Wax gourd	cpewgoB0468