Cp4.1LG18g00460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g00460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHypoxia-responsive family protein
LocationCp4.1LG18 : 999340 .. 1001209 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAGCCTACGTGGCTTTGCCCACCGATTTTCACGACTTTCCTTCCTTTCTCTTATAAACAATTAGCCATTCCCCCAATACCGAAACCTCCGTTCTTCATCTCTTCTCTTCCTTTTCCTTCGCCGATCGATCTCTGTTCCCGTTCCCCATGGCTGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGGTAAGTTCAACTCATCAATCCTCTCCTCTATTTCATTTTCCTGATTTCCGATTGATTGATTATGTTTAATCTTCTCATTACTGGAAGTTTCGTTTTCGAGTTATAATTGATTTGTTGTTGTTGTTGTTTGGGGTGAAGGATCTCTGTGGCTTAGCGGGATCGCGGGTTCTATTGCGTATAATTGGTCTCAACCTAATATGAAGACTAGCGTGAAGATCATCCATGCTAGGTGAGTTTCTAATTTTTTTTTTATGTTTTTCGATTAATCCTGGATTTGGAGTTCTCCTAGTGCTGATTATTTATGGAGTTTTGATTCTGGAATGAATTAGTGAATGATCCTTTTTGGTTGAAAGTCTGTAAATATCATCCCTCTTTTGGGATCTTGACGAGTCATGAAATCTTGAGGATGTTCTGTAGCTATCCAGAGAAAGCAAAGATTGTTGTCTCCTTAATTTTGTTTGAAGTAGAACAATTTTGGTTTCTCTTTAACAAACAGCTGATTGATCGTGTTTGTTCTTAAATTTTTGTTCTAGAATTTTGAAAATTATAATTGGAAACAACATTCAGGAGGCACTCAATCCATTTTTCCCTCCTTATTCCTTGTCCTATGATTGTGTTCTTTGTTTTACTGATGAGCACCAAACACGCTTAGCTTCTGCCTTAGGTGCTTTTGTGGCCTTGTACTGTTCATGACCTCTAATTGGAGTTGTAACTACTCATACCATCAGCTTATATTAGAGGGCCTTTATGTAACCACTCAAGGATGCCTTGTCCCTTTGACCCTTGTGCTGTTCGGGCTCGTTCGGTGCCTTTTTGGATGAAAGCTGTGGCTTGGTTCTCATAAAAAGTTATTGAGAACACCTTGAACATTTCCATTAAACTTTATAAGGTCATGTCTAATGATTGAAAATGCGACACGATTTCAATGTAGCTCTTCTAGTTATTTCATATCGATGTCTATTACATCCATATTTCCTCCTTTATGATCAGGATTAAACATGGAATTTAGTGGAAGTTTGACAATTACCATTGAGATTTCGAACATAGACTCGACAAAATTGAAAGTCAATAAAAGTTCATGAAGGATCGAATATTAGGGATCAAAATTGAAAGCCAAATTCATTTAGGATCCTGCATATCCACTCGTTTTCCTATTGAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGTAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAATAGATCCTCCTACATCTGTATATAAACGCTAGTTTATCAAGAATATGCAAGAAAAGCACTTCGGATTGTTGATTCATTCCGCAATATTTTTCATTCTATGTTTTTTCTCGGGTTCATTCGTAAAGTTGGTTAAATCGGATCTCTTTGTTTAGGGGCAGATGTATGGAAGTTTTTCTATAACAGAACATTTTAAATGGCTTACATTGGCTTTCTTTTCCATGTTTTTTCTGTATGAGTTTCAATTCTGATGTGTTAGGTTCTTCAAAATCACTCTCAGGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCGGTCGTCGAATATTATGAACACAAATCTGGAGCGAAGGCGGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGAC

mRNA sequence

TAGAGCCTACGTGGCTTTGCCCACCGATTTTCACGACTTTCCTTCCTTTCTCTTATAAACAATTAGCCATTCCCCCAATACCGAAACCTCCGTTCTTCATCTCTTCTCTTCCTTTTCCTTCGCCGATCGATCTCTGTTCCCGTTCCCCATGGCTGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGGATCTCTGTGGCTTAGCGGGATCGCGGGTTCTATTGCGTATAATTGGTCTCAACCTAATATGAAGACTAGCGTGAAGATCATCCATGCTAGGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCGGTCGTCGAATATTATGAACACAAATCTGGAGCGAAGGCGGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGAC

Coding sequence (CDS)

ATGGCTGAATCCAAGGGCAAACTCGAATCTCTCAGGGAGTGGGTTTCCGAACACAAGCTTCGCACCGTCGGATCTCTGTGGCTTAGCGGGATCGCGGGTTCTATTGCGTATAATTGGTCTCAACCTAATATGAAGACTAGCGTGAAGATCATCCATGCTAGGTTACACGCACAGGCTTTGACCTTAGCTGCTCTTGCGGGCGCTGCGGTCGTCGAATATTATGAACACAAATCTGGAGCGAAGGCGGAGCGATATGCCAAGTTCCTTCCCGTTGATAACTACTCACACAAGGAC

Protein sequence

MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQALTLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD
Homology
[Close]
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match: A0A0A0LYG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569360 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 6.6e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE KGKLESLR+WVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

[Close]
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match: A0A067EMC0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034303mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-40
Identity = 85/98 (86.73%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match: Q1I1D6_CITSI (Hypoxia-responsive family protein OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-40
Identity = 85/98 (86.73%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVIQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match: V4SGB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002947mg PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-40
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K +RYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTDRYAKFLPADPYAHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match: A0A061F3N1_THECC (Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_026666 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-38
Identity = 80/98 (81.63%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAESK K ES+REWV +HKLRTVG LWLSGI GSIAYNWSQP+MKTSVKIIHARLHAQAL
Sbjct: 1  MAESKSKFESIREWVVDHKLRTVGCLWLSGITGSIAYNWSQPSMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+H++  KA++YAKF+PVD+YSHK+
Sbjct: 61 TLAALAGAAVVEYYDHRNRPKADQYAKFIPVDSYSHKE 98

[Close]
BLAST of Cp4.1LG18g00460 vs. TAIR10
Match: AT3G05550.1 (AT3G05550.1 Hypoxia-responsive family protein)

HSP 1 Score: 154.1 bits (388), Expect = 4.6e-38
Identity = 78/98 (79.59%), Postives = 84/98 (85.71%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          M ESK K E +R+WVS+HKLRTVG LWLSGI GSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MVESKTKFEEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HK+ A   RY KFLP +N SHKD
Sbjct: 61 TLAALAGAAVVEYYDHKTEA-TNRYPKFLPPENLSHKD 97

[Close]
BLAST of Cp4.1LG18g00460 vs. TAIR10
Match: AT5G27760.1 (AT5G27760.1 Hypoxia-responsive family protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.2e-34
Identity = 71/93 (76.34%), Postives = 79/93 (84.95%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K K+  +REW+ EHKLRTVG LWLSGI+GSIAYNWS+P MKTSV+IIHARLHAQAL
Sbjct: 1  MAEPKTKVAEIREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDN 94
          TLAALAGAA VEYY+HKSGA  +R  KFL  DN
Sbjct: 61 TLAALAGAAAVEYYDHKSGA-TDRIPKFLKPDN 92

[Close]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match: gi|449435647|ref|XP_004135606.1| (PREDICTED: uncharacterized protein LOC101204590 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 9.5e-46
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE KGKLESLR+WVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MAEPKGKLESLRDWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYYEHKSGAKAERYAKFLP+DNYSHK+
Sbjct: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPIDNYSHKE 98

[Close]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match: gi|1009116888|ref|XP_015875019.1| (PREDICTED: uncharacterized protein LOC107411869 [Ziziphus jujuba])

HSP 1 Score: 181.0 bits (458), Expect = 9.9e-43
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MA+SK KLES+REWV+EHKLRTVG LWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL
Sbjct: 1  MADSKSKLESVREWVAEHKLRTVGCLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSGAKAERYAKFL VD YSHKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGAKAERYAKFLQVDPYSHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match: gi|641837233|gb|KDO56188.1| (hypothetical protein CISIN_1g034303mg [Citrus sinensis])

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 85/98 (86.73%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match: gi|70609694|gb|AAZ05072.1| (hypoxia-responsive family protein [Citrus sinensis])

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 85/98 (86.73%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVIQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K ERYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTERYAKFLPADPYAHKD 98

[Close]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match: gi|567881739|ref|XP_006433428.1| (hypothetical protein CICLE_v10002947mg [Citrus clementina])

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-40
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MAESKGKLESLREWVSEHKLRTVGSLWLSGIAGSIAYNWSQPNMKTSVKIIHARLHAQAL 60
          MAE K KLES+REWV ++KLRTVGSLWLSGIAGSIAYNWSQP MKTSVKIIHARLHAQAL
Sbjct: 1  MAEHKSKLESVREWVVQNKLRTVGSLWLSGIAGSIAYNWSQPGMKTSVKIIHARLHAQAL 60

Query: 61 TLAALAGAAVVEYYEHKSGAKAERYAKFLPVDNYSHKD 99
          TLAALAGAAVVEYY+HKSG+K +RYAKFLP D Y+HKD
Sbjct: 61 TLAALAGAAVVEYYDHKSGSKTDRYAKFLPADPYAHKD 98

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g00460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYG3_CUCSA6.6e-4695.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569360 PE=4 SV=1[more]
A0A067EMC0_CITSI2.4e-4086.73Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034303mg PE=4 SV=1[more]
Q1I1D6_CITSI2.4e-4086.73Hypoxia-responsive family protein OS=Citrus sinensis PE=2 SV=1[more]
V4SGB2_9ROSI5.4e-4085.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002947mg PE=4 SV=1[more]
A0A061F3N1_THECC1.0e-3881.63Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_026666 PE=4 SV=1[more]
BLAST of Cp4.1LG18g00460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05550.14.6e-3879.59 Hypoxia-responsive family protein[more]
AT5G27760.15.2e-3476.34 Hypoxia-responsive family protein[more]
BLAST of Cp4.1LG18g00460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435647|ref|XP_004135606.1|9.5e-4695.92PREDICTED: uncharacterized protein LOC101204590 [Cucumis sativus][more]
gi|1009116888|ref|XP_015875019.1|9.9e-4391.84PREDICTED: uncharacterized protein LOC107411869 [Ziziphus jujuba][more]
gi|641837233|gb|KDO56188.1|3.5e-4086.73hypothetical protein CISIN_1g034303mg [Citrus sinensis][more]
gi|70609694|gb|AAZ05072.1|3.5e-4086.73hypoxia-responsive family protein [Citrus sinensis][more]
gi|567881739|ref|XP_006433428.1|7.8e-4085.71hypothetical protein CICLE_v10002947mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g00460.1Cp4.1LG18g00460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 17..67
score: 5.2
IPR007667Hypoxia induced protein, domainPROFILEPS51503HIG1coord: 1..83
score: 21
NoneNo IPR availablePANTHERPTHR28018FAMILY NOT NAMEDcoord: 1..98
score: 3.6
NoneNo IPR availablePANTHERPTHR28018:SF1SUBFAMILY NOT NAMEDcoord: 1..98
score: 3.6