Cp4.1LG17g10430 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g10430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Poly(RC)-binding-like protein
Location	Cp4.1LG17 : 7868679 .. 7878805 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTAATTTGGTAATCTTGGCTTGTTTTTGAAATGGTCGGACGAAGACGAGGAAGAAGAACAAGACATTGTTGTTGTTGTTGTTGATTTTCGGCTCTTTCTCGAGCCTCCTCCGACGGGAACGTTTCGGAGAGACCCGCCTTCAGTCCAATACCTTCGACAAGACTTGCAAAAGTATCTTGGTTGCATGAGGCTATAGTTGTTGTAGTAACAGAATTTGGTGTTGTTCGACTTGCATCTCGGGCAGCTCCGTAGCTCTTTTGGAGCTTCCCTTGATGACGATAACGACAACGACGACGATCTTGAGCTTGGATTAGGGTTTATCTTTTGATTCATGGCTTACACTAACCCTGCATCCAAACACACCAACAACAAAACAAAATCGTAGAGTTGAAGAACAAAGAAGAAGAGCTATTCATTCATATTCTTACCTATGCCCAATGATAAGCAACGTCCATGAACTTATACAAAGAAGCTCACAAGATGGTTTCCGATGTGGGATTGAGCTTTGCTTTAAAAAGAGTGTTTTCATGGGGAGTTTTTTTGGTGGGTTTCTCACTTTTGACTTCATAATTGGTTGGGTGAAGCCATTGATTGTTTGGTCACCTTCTCTTGCTTTTGCATGATGACCATTCAACTCCTTTAGAAGCCCCTTGGCCTTTTCTATGGGTCATAGATACTCAAAAGAGAGAGAGATGGGCTTCATTTTGGAGAACACCTCATCTATTTTTGTTGTTTAATGAGTGATGATAGGTTGTAAAGGCATAAACATGGCCCCATGAGAGTAGAAAATGAAGTTGAAGAGAGGAAATTTTAATGGGTTGAGGTTGGTTTTGGGTTTTGTGGAGTGTAATTCTCGAAATGATCGAGTTTGAGACTCGTTTAAAGACTATTTCGAAGCTCGAGTTGAAAACCTAAATGGGGGAGTCGGGGGTTTTTCTAGGGTAATGTTGTAGAATCGATAATAAGTTGATAGCATGATGGATGAAGTTTGGTTATAGGTCAGAATTCAACTGAACCTTGTCTAAACCGTCACGACACTTCAATGCATTTTAAGGAGAACCAGTTAGTTCTGGGTTGGACTTGAACTTTTCCAGCTCTAAGAGCACCTTCTCATCTCTTCGTTGCTTTGCCAAAAAACGGAATATGGGTCTTGAGCATGGCACCTAGGTGCCCAAACCTACCTAAGTGCATGACCCACGACATTGAATCGCTATTCTAAAGCATCATTGAGTGCCCCTAAAAGCCTAACATGGTTTTTTCATAGTTACTCATATTAGGTTATTTGTGAGAATGATAGCGAGTACAAGAAAAGTAGGTAACCATCTAGTGAAGGGTTCTTGAGAATATATCGTAAGAACTTGTCGAGATACCTTTAACATAAATATAGAGCAACTTCTTTCGTTTGATTACCATTTGATATTTAATTTCTAGTTGTTTAAAATAATAAATTTTAAAATAGAAATATAAGGACTAAATCATTAATAATTGAAGTTTAAGGACTAAATTGTTATTTTTATAAACGTTCACGAACCCGAAGTAATTCTTAACCTAAACCCACAACGTTGGTATCAATCTTCAAATGGCAAATGCTTCGTCCCTGCACTCATAACTCATAGCTTACTCATACCTACCAATTCATCATTTTTTTTCCTTCAATAATTCCTTTTTATCTCAAATTTATTTTTGATTTCTCAAGTGGGTGAGAATACAATTATAGCACTTTCCTTTAATTATGGACATTTTTTCTTAAATTACCGATTTAGTCCTCAAATTTTAATAGTTATATCGGTTTGGTCCTTTAATTTTACAAAATTTCAGTTATATCCCTAACTAACTTTGATCTGCAATTCTGTATTTCTTGATTGGCTCCCTTCAATTACTTGATATCATCTAGTATTTCATATGTCTCACTGAAAGTAAATATTTTTCGATACGAAGTTATAAGCCTGTAAATTACACAACGGTTAGCCCCATGTTTAAAAAATAACTATTAATTATCAAAAGTAGTATTAATATTCGTAATTTTTTTTTAAATTTATGGTTGACACGAACACAAACGCTGTCATAAATAAGTTATGTCAATTAATTTCAATAATAAAATTTTGATATTAAAAAAATTGATTGGTATTTTTGGAATATGATACTAATAGTGTCGTCCATATTTTTTATTTTAAATTTTTTAAAAATTTTTTATTTAAAATTTTGAAAGTTTTGAAGGGTATTTTTTTTTTAAAAAAAATATAAACTATTTCTGCCAACAAATAATTTTAATAGTAAATAGTTATTTATTTAATTTAATTTATTTTATTTTAGTTGTGACGTAAAAAAAATCAAATAGTTAGCCCTTTGTGTAGCTGTGTGTCATCCATCGCGCTGTGTTGATTTTCTTCTCTATGGTATCATCAATGATCATAAATTTATTTTCTCTTTGAATTCATGTATTCATAGCTCACTCACATGAGAGATTTCTCCGCCAAATATGCAGTCAGGTGATATCCCGGTGTACCCTTCCATGCCCGCCAAGGCTCCCTTGCCTGTGTCTATGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCTGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGCGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATAAAAATTGCGGATGCAGTCGCGGTATGGTTTTGTATTTGATTTTGAGTGATTCGGTTTAGGGTTTTCGTTTTGTATTTTGTAGTTTTTTGTTGCTTTTTTCCTTCGTTCGGCTATCGGGGAAGTGTTGAAGTCAAGCTTTATGTGTGATTCACTATGTTGAATTCTAGTGGTTTTGTTTTTCTTCTCTCAACTCTTTTGCTGGTTGTGTTGTATGCCAAATGGTCGTCGAATGGATGAAAATTTGGGGTTCTCTGATGTTTCAGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGAAAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGTAATTCATGGCCAATTGCTGAACTTTGCTGTAGAGATGATATATTTATTTTCCTATGTAGCTGCCCGAAGTTGGGGTCTAGGCCTTTTGCATGTGTTGATCTTATTTGCTAATCATAAAGATGGTGCATTTTGGATTATGATATGTTTCCTTTGTTCCCTATCAATAAATATTTTTTTCCTATTATGATTCATAATCTACTTAATCACCCAAACTTAAAAGGTTGGATGTCCTGACTGAACCCCTTGGATATAAGGTAGAGAATGTGAGTTTAAAAAACTTGGATCGACTTCCCTAAATACCGAAAAGTTGGTTGAAATATAGGATTACAAATATACCGCTAGTGTACTGTTTCATAAATGCTGAAAAGTTGGTTGAAGTATACGATTACAAATTAAATTCTGGTAGTATGATTGAAAGGTTAATGTTCTATTTAATTGCACCTTGAATATGTAGGGGATCTTAATTGATTACATGGACTTAAATGATCGCTCATTTTACATTTTTGTGCAGTATTGTGTAGCCTTCTTAATGGGTTTAAGTTTTTAAGTGATCCTTACCATCATTAATAGGTGAAGTTTTTTTTCCTTAAATAAATGTTCCTCCACATATTAGTTTAACTTTTTCCTTTCCTCTTTCTTTCTTGGACATGATTGGAAGGCCAAAGTTCTTTTAATTTGACATATTCCTCACTCACTTAAGAATCGTGAGGAATTCTCAATGAGAAGGTGTTTTGGAGTGAATGGGGTCGAGATTTGGTGAGATGGGAAGTTGAATCAAGGGGTTCAAGGAGGATGGGTAAGATATAGGGAGGCAGGTAGGAACTTAACTTGCTTCATTGGCATGTATAATGGGGTAGTGATAATGATTGATGGAAGTAATGGGCGGTACTGACTTAAGAAAATATTGTGTTATAGACGACAATTCAAAATTTTCGATCAGAGAATCTAATCCGTATTGACTGCCTAAAAAAATATGATCAATAAATCACATGTTAGATGAAAATAAAAAGACAACACTCGAAGTTATTGATTTTCAAGGCAAGGCTAGGCAAGGCAAGGCTAGGCAAGTAACAGCTCTTCCATCATGTGATTGGTTCTTTTTTCTTTCTTTCTTTCTTTTTTAAGTAACTATGTGCTTTTGAGCTAGCTTGCATCCACCTTGAAAAATCATACCTATCCCTATAACATTTGATGTTAGGAATTTGTAGTATATTTGACAACTCAGAACTTAGACAGGCAGCCATCGGCATTTTAACCTACAAGTATGGATTGCTAACTTTCTCAAATAACCTGTCCATATTTGATCAATTACATTAGTCTCTTTCTTGAAGTTCTGATGTTCTCGTGATAGGATCATAGCTTCTGTCGTTTGTTTTAGATAATTTTTGTGAATTTTGTATTTCCTGCTTTTGTTTTTATTTATTTATTTAATTATTCTTTCAGTTATGTTTTTACAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTGTAAGGCTCCTTATTGCTGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAGAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCTAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGGTGAGTTTTTCCACGTTGTTGTAAGTTGTTAGAACATAGATAATTTACCATTCTTCTGCCTTCCTATCATGTTCATCACTTTTTGTTTGTATCGTAATGAATGACCAGTGTTATACAGCTATTCTTGATGCTATGTGATTTTAAAATTGAGCGAGCTATTTTAGTAGCTGACAATTGCAATTAGTGAGGCGAAGACAATCTCTTGGTTTTACTCTGGGCATCAGTGATGTAATTACTCTTTAGGTATTGTCTAACTTGATTGACAGAAAACCCGTAGGAAGACTTCCACTTTTTTGGGTACTCTAGCCCCCCAAATCGCTTTTAACAGAGTAACATCAACGGTCGCTTGATGATCATAAAGTTCAGGAGCTAAGGAGTTGAGAAAGCTGTTTGTCAATGTTAAGGATCCACGATTTGGATCCCTTCACATTCGATGGGCGCTTTGCTCAAGGAGGCCATGGAGCTCAATGCATTCTAAAGTTTCTTCATCAGTCCAATTCCATCTTAAAGGAACAATCCAATCGTTGGAAGAGGAGGAACAACATTGGGTCAATAAAACTATCTTTAGACCATGCAACATCAAAAATTTGAGGAAAAGATGATTTAAGGGCCTGTTCATTCACATCCACTTATCTACCCAAAACCGGATCTTGTAGACCTTGCCATAGTTGATTTGAGAAGCAGTTCCATTTGGGATTTTTAAGATTGGCATTAGAAGATGAAGTTACACTGTTTCTTTCTAGGTTTGGATATTCTATTGCTGCTTGCTTGGGAAGGTGACCCTTGGAAGTAGTTAGGGAATGGAAATTGGTCTTAGAAATGATAAGGTTGCTAGAAATTTTCTGCCAGCCTTGTTCTTCAAGATACATTTCTCGTTAATAATTTTAAATTTTACATACTATGAATCATTTAATTTCAAGTATTTTAATCATTCTTAAACATGCACATAATTATTTACCGAATAGATCATGTATTGAATTTTATGCAAATGTTGTGAAATTGTCATTCTCCTTCTCTCACATTGCTAGGTTACTTTTCTTGATGTCTTGATCTCACATTACACTCATTTAATCTCACTTTTCGAGGCATCCAAGATCATGTTATTAAGAGCTGGCACTGACGATCGACTTTGTTTTGTCTGGAACTCAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGTCTGGTATTGAATATTGTTTCAGAGTCTACCTGATTCATGTGCACTTCTGAAACTGTTACTTAAACTACACTCATTTTCTGGTAACAAGATGATTGCTGTAGATGTTTCTTGAGATAAGTCAAATCTCGGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGGGTAAATCCTCCTCGGCAAGTCATTTCCGTTAGCCCAACATATAATTATAATGCAATACATCCGCCACAGTCATATATGGATCCAACCTCAGGTTATTCACTGGTTTCTGTATCAAATAAATTCTTTCTGATTCTGTCTTTTGTATCTGAAGTTTTAATATTTTTTCTTCTAACCACATCATCTTTAGGAAAATCAATCTTGCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCTACAATCAAGGTCAGCAAACCATGCAGATTTAGTTTCATTATGAAAGGTCTTGAAATTATGTTCCTAAAACTTATATCCTTACACTATTCTTTACAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAATTACAATTTGGTGGAAGTGCTGAACAGGCATGACTTTTTCTCTTATTTTAAGGTTTCATGAACTAGCTCTAATTCGTGCGATGGGAAGGAGGGTGATCTTGTATTGTTAAAACTGTCAGATTCTAAGACTTGGTATATTAATTATATTATTTTTATTTTAATATAATGTAGGCTGGGTATATATATATATATATATCTTAGCTTCCATACATAGATATCCGTACTCATGTTTTTATACACCTTGCTTTTTTGTTGTTTGGGTTTCATTTCTATAAAAGATTTAACTGCTGAAAGTAGCAATTTGTTTAAGTCAAAATCATTTATACCAAAAACGTTCCTTCGAAATTTAAGGTCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCGAAACATATGATTTAGGAGGTGCCAAAAGTTGACTAACCTCTACTGGGGATAGGTGACAGAAGTAGAGTAGCCTTATAATATCTTTCTAGAGTGTTTTTTTTAATACAATTCTTCGTTCTTATTTGTATTATTTTCTGGTGAAGGATCTTCATGTTGAATTGTTTGGACGGTTTACAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCGTAAGTTTTCCTTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAATAACTTTCCTTTAGTGAAGCCATAGTCTAAGTTCTATGGTCTTATCCCACGAGAAAAATTAAAATTGAATTAAAAGTTTCATACAAATCGAACTTTTATGTTCCTAACAGAAAATTCATGACGCTAAGTTGTTCTCAGTAATACTCTTTAACAGAGGCAAAGAATGACTAATACTTAAATTCACTAGTACTTGAAATAAACGGTAAAATGAATGATAAGACTTTGTCAAGCCATTCAATATTTAATATTTAGAATCATGGACATGGAGGGTGAGTTCGTGATGATTTTTGGAAAGGTAAGATGTTTTTAGTCCTTTCGGATTCACAAACTTAGGAAATAGAAATGTCCTAATCACACAACTTAAAAGTGTTTTTTTTCAAAAGTTTAGGCTAAATTATCGAACCTTCGATAATAACCTTAGACTTCCATCGTAAGTACTTTCTTTTCTTGAACTTTCAAAAGTTTTATTAATATCTTGACATCTAAAGAACGGTTCAAAAATACTATAATCATCAATGGATGAAATTTTTACTATCATGTTTCAAAAATACCTCCAAATTTTGAAAAGTAGCGTTACTCTCCTTATATTTGAAGTTTATGGTTGGTATAGGAATGAAAACTCTTTTTATCTTCACTTCACATATCATCTCCCTTCTCCATTTCATCTCTCTATGGTCCAATCCTCTCTCATTTCTCATCTTTTTTTTTCTTAAATATCAAAATTTGGAGAGGTTCTCTAATTTTTTTAGCTTTCTCAAATATAAATATAGAAAGGTATTAAATTTCTATGACGTCAGAACTCTATTTCTTGTTGCAATTTGAGGCTATTCTTGAATGTATTGTTTCATCTGCTCTATTTTATGAACTTCAACGCATTCTGTGGAAGAAAAATTATCTTCTTTTTACGTTTAAGGTGAGTTCCTCTCAAATGTTTCTGTGATTTCAACCATGACAGTCACAAGTGTTTCACAAATTGAATTAGAAATTGTCTTATAAATATGATTGTGCTTTGTTTCAAACTGAACTAGATAGTTTCAAATGTTTCAACTTAGTACCCTACAATTTGGAGCAATCTTGGCATCTTTGCATTCATCAAATATTTTACCATTTTCGTCTGTCATGATTCCTTTTGATATCAGTTCATTTCCTCTATTAGTAGTTTCGAAAGAAAGCACGACAACTATGCCAGTTTAGGGATTAAATTGAAACTTTTAGAACCATCAGAACTAACAACGAATTATAGGGGCTAAAACGATACTTAAGCCAAATACTATCGGGTTCTTTTGCTGCTAACGAACAAGAAATTTGAGTGTGTTAGCTCATATGGTACATCATTGTTGTTCAGTCTGCAGATGTGGTAAATCTCAAACATGGAGGAATTATTACTTTATAATGCCAACATCTGTGCATGGGAATCTCTGAAGAACAGCTCCTACAAACATCAATCTGATGACTGAGAGGTGGAGATGTGAGTACAGTTGATGAAGTGAAATAATGGTTTTTTTTTTATATATAATTATTTTATTTTTAAGTGTGACATATTGTAATTGTGGAAAATAGTTGTCTGAATATTTTCTATACTAACAGCTTAAAGGTTTCTATAGCTATAAAAGGCTGATAGGAAAAGTTTGGCCTTCAGCTCTGAGTCTTCAATCTTGATCATTATATGAACATGTAAGGATACAAGTTCATACTACATTCACATCAGTTTTTTTCTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTAGCTTTATTTATTTAGTTTAGTTTAGTTTTGTAGTAGATTTATGGGCTTTATTTTTGTTTTGTAATTAGTTTTCCTTTTAATTGAGACATTTATTACACATTTATATGATTTTTTTAATATCAAAATTATTATATTTTTAATAAATCAAATGGTTAAAAAAAATATTTTTTATAATAAAAGAGAGCGGTGAAATGAGATGACGAAAGAAGGCGAGTTGATATGCTTTGATCTAGGAAAAAGCTTGGTTAACAACCAACTTGGTGGTTGCTGATCTACGAGCTCGACTATTCGAGCATTTTCTTCTATATCAATTTATAGGAAAATGCTACAAGTCATTTTTTCTTTTGACGATGTACCACTTTGGTATAAACAAGCATTTTCTTTTGACATATTGTCGTGATCACGTTACTATTAGTTGACCTATGATATCGACTAACACTCACTTGTCACAATTGCATTTTTCTTGGCAGCAAATTTTGCGATTGTGCGGCAGTCGCTTCCCAACACCAAGTGAGTTAAGTCAATTTGTATTGCACTTACTTCCCAACACCAAGAGTCAAGTCAATTTGTATTGCACTCACTTCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACATCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACATCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACTTCCCA

mRNA sequence

ATGAAGGCCTCCTCCGACGGGAACGTTTCGGAGAGACCCGCCTTCAGTCCAATACCTTCGACAAGACTTGCAAAAAATTTGGTGTTGTTCGACTTGCATCTCGGGCAGCTCCGTAGCTCTTTTGGAGCTTCCCTTGATGACGATAACGACAACGACGACGATCTTGAGCTTGGATTAGGTTGTGACTCAGGTGATATCCCGGTGTACCCTTCCATGCCCGCCAAGGCTCCCTTGCCTGTGTCTATGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCTGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGCGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATAAAAATTGCGGATGCAGTCGCGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGAAAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTGTAAGGCTCCTTATTGCTGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAGAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCTAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGAAAATCAATCTTGCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCTACAATCAAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCTCTGCAGATGTGGTAAATCTCAAACATGGAGGAATTATTACTTTATAATGCCAACATCTGTGCATGGGAATCTCTGAAGAACAGCTCCTACAAACATCAATCTGATGACTGAGAGGTGGAGATCTTAAAGGTTTCTATAGCTATAAAAGGCTGATAGGAAAAGTTTGGCCTTCAGCTCTGAGTCTTCAATCTTGATCATTATATGAACATCAAATTTTGCGATTGTGCGGCAGTCGCTTCCCAACACCAAGTGAGTTAAGTCAATTTGTATTGCACTTACTTCCCAACACCAAGAGTCAAGTCAATTTGTATTGCACTCACTTCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACATCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACATCCCAATACCAAGCGAGTCAAGTCAATTTGTATTGCACTCACTTCCCA

Coding sequence (CDS)

ATGAAGGCCTCCTCCGACGGGAACGTTTCGGAGAGACCCGCCTTCAGTCCAATACCTTCGACAAGACTTGCAAAAAATTTGGTGTTGTTCGACTTGCATCTCGGGCAGCTCCGTAGCTCTTTTGGAGCTTCCCTTGATGACGATAACGACAACGACGACGATCTTGAGCTTGGATTAGGTTGTGACTCAGGTGATATCCCGGTGTACCCTTCCATGCCCGCCAAGGCTCCCTTGCCTGTGTCTATGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCTGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGCGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATAAAAATTGCGGATGCAGTCGCGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGAAAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTGTAAGGCTCCTTATTGCTGGATCTCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAGAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCTAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGAAAATCAATCTTGCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCTACAATCAAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCTCTGCAGATGTGGTAA

Protein sequence

MKASSDGNVSERPAFSPIPSTRLAKNLVLFDLHLGQLRSSFGASLDDDNDNDDDLELGLGCDSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKINLAVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVALAKQRVDEYIYSQLMRQAGVQPTALQMW

Homology

[Close]

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot
Match: PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-16
Identity = 56/172 (32.56%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 128 DVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTV 187
           D +FR++ P  ++G +IG+ G  I+K+ EET+A IK+ D      +R+++IS K++    
Sbjct: 73  DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132

Query: 188 TDAEKALQQIAALILKEDGT-SIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEK 247
                A+  +  +  +  G    ++  V       ++VRLL+A +QA +LIG  G  I+ 
Sbjct: 133 MSP--AMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKS 192

Query: 248 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRK 299
           +  +SGASV IL+  + P  A+  + +R+V + G+   +LKALE I   LR+
Sbjct: 193 IVENSGASVRILSEEETPFYAA--QDERIVDLQGEALKILKALEAIVGHLRR 240

[Close]

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot
Match: FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 66/218 (30.28%), Postives = 117/218 (53.67%), Query Frame = 1


Query: 104 EDDPIVP-YSEAVDVSAPKRQAKAH-----------DVLFRIVAPSKQIGKVIGKVGCRI 163
           ED+  +P + E++  S P+  A              + +FR++ P++++G +IG+ G  I
Sbjct: 150 EDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVI 209

Query: 164 QKVREETKATIKIADAVARYEERVIIISSKDK-ENTVTDAEKALQQIAALILKEDGTSIE 223
           +K+ EET+A IKI D      ER +++S K++ E+++  +   L ++   I+  DG   E
Sbjct: 210 KKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGE 269

Query: 224 ELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAH 283
             +       +   RLL+  SQAGSLIG  G  ++ ++ +S   V +L    LP+ A   
Sbjct: 270 ASQAPPPSKVST--RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL-- 329

Query: 284 ESDRVVQISGDVPAVLKALEEIGNQLRKINLAVNYVTF 309
           + DRVV++ G+  +V +ALE I + LRK  +  + + F
Sbjct: 330 QDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPF 361

[Close]

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot
Match: HEN4_ARATH (KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-13
Identity = 55/171 (32.16%), Postives = 99/171 (57.89%), Query Frame = 1


Query: 128 DVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS-SKDKENT 187
           DV+F+I+  ++  G VIG  G  ++ +  ET A I + + +   EER+I ++ S++ E  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 188 VTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEK 247
            + A+KA+  I + + +     I    +  G  ++ T RL++  SQ G ++G  G  + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKI----LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 570

Query: 248 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLR 298
           +R ++GA++ IL   Q P C S  E+D+VVQI+G+ P V +A+  I ++LR
Sbjct: 571 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLR 615

[Close]

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot
Match: Y4837_ARATH (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.9e-12
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 1


Query: 129 VLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIII--SSKDKENT 188
           V++RI+ P   +G VIGK G  I  +R  TKA IK+ D +    +RVI I  S K+K+  
Sbjct: 36  VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95

Query: 189 V----------TDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSL 248
           +            A+ AL ++   I+  D  +    K           RLL+  SQ+ SL
Sbjct: 96  IGFTKSENEPLCCAQDALLKVYDAIVASDEEN--NTKTNVDRDDNKECRLLVPFSQSSSL 155

Query: 249 IGASGQNIEKLRNSSGASVTILAPN-QLPLCASAHESDRVVQISGDVPAVLKALEEIGNQ 301
           IG +G+NI+++R  + ASV +++ +   P    A E D VV ISG+  +V +AL  +   
Sbjct: 156 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 215

[Close]

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot
Match: PCBP3_MOUSE (Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-09
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1


Query: 211 ELKVGTGHVAAN-TVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASA 270
           E KV  G +    T+RLL+ G + GS+IG  G+ ++K+R  SGA + I   N    C   
Sbjct: 34  ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----C--- 93

Query: 271 HESDRVVQISGDVPAVLKALEEIGNQLRK--INLAVNY-------VTFEMLISETLVGGL 330
              +R+V I+G   A+ KA   I  +  +  IN   N        VT  +++  +  G L
Sbjct: 94  --PERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSL 153

Query: 331 IGIGGFNISRIRNESGATIKVA 343
           IG GG  I  IR  +GA ++VA
Sbjct: 154 IGKGGSKIKEIRESTGAQVQVA 166

[Close]

BLAST of Cp4.1LG17g10430 vs. TrEMBL
Match: E5GCN1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 5.6e-146
Identity = 285/328 (86.89%), Postives = 296/328 (90.24%), Query Frame = 1


Query: 64  GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQ 123
           GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDD IV  S+A DVSAPKRQ
Sbjct: 4   GDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAPKRQ 63

Query: 124 AKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 183
           AKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 123

Query: 184 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQN 243
           EN+VTDAEKALQQIAALILKEDG+SIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQN
Sbjct: 124 ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 244 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKINLAV 303
           IEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLRK NLAV
Sbjct: 184 IEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRKTNLAV 243

Query: 304 NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---------------------VA 363
           NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK                     VA
Sbjct: 244 NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQIQFGGSAEQVA 303

Query: 364 LAKQRVDEYIYSQLMRQAGVQPTALQMW 371
           LAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 304 LAKQRVDEYIYSQVIRQAGVQQTALQMW 331

[Close]

BLAST of Cp4.1LG17g10430 vs. TrEMBL
Match: A0A0A0KCF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103530 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 3.9e-139
Identity = 281/354 (79.38%), Postives = 295/354 (83.33%), Query Frame = 1


Query: 64  GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQ 123
           GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDD IV  S+A D+SAPKRQ
Sbjct: 4   GDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDISAPKRQ 63

Query: 124 AKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 183
           AKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 123

Query: 184 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQN 243
           EN+VTDAEKALQQIAALILKEDG+SIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQN
Sbjct: 124 ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 244 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKIN--- 303
           IEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLR +N   
Sbjct: 184 IEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLR-VNPPR 243

Query: 304 -----------------------LAVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 363
                                   +VNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA
Sbjct: 244 QVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 303

Query: 364 TIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTALQMW 371
           TIK                     VALAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 304 TIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Cp4.1LG17g10430 vs. TrEMBL
Match: W9QHY9_9ROSA (KH domain-containing protein OS=Morus notabilis GN=L484_021836 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.0e-99
Identity = 212/299 (70.90%), Postives = 234/299 (78.26%), Query Frame = 1


Query: 91  SKPGHAVTGKRRREDDPIVPYSEAVD--VSAPKRQAKAHDVLFRIVAPSKQIGKVIGKVG 150
           S+ G + +GKR RED+   P     D   SAPKR+AKA DVLFRIV PS QIGKVIGK G
Sbjct: 20  SETGQSSSGKRSREDEAPPPGGGEDDESYSAPKRRAKAQDVLFRIVVPSSQIGKVIGKEG 79

Query: 151 CRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAEKALQQIAALILKEDGTS 210
           CRI+K+RE+T+AT+KIADAVAR+EERVIIISSK  +N V+DAE A QQIA LILKED +S
Sbjct: 80  CRIRKIREDTRATVKIADAVARHEERVIIISSKYSDNQVSDAENAFQQIATLILKEDDSS 139

Query: 211 IEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCAS 270
           +E  KVG GHVAANT+RLLIAGSQAGSLIG SGQNIEKLRNSSGAS+T+LA NQLP CAS
Sbjct: 140 VEAAKVGAGHVAANTIRLLIAGSQAGSLIGMSGQNIEKLRNSSGASITVLAQNQLPSCAS 199

Query: 271 AHESDRVVQISGDVPAVLKALEEIGNQLRKINLAVNYVTFEMLISETLVGGLIGIGGFNI 330
           AHESDRVVQISGDV AVLKALEEIG QLR  NLAV+YVTFEM ISETLVGGLIG  G NI
Sbjct: 200 AHESDRVVQISGDVHAVLKALEEIGCQLRTNNLAVDYVTFEMAISETLVGGLIGRSGSNI 259

Query: 331 SRIRNESGATIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTA 367
           SRIRNESGATIK                     VALAKQRVDEY+YSQL++QA  Q  A
Sbjct: 260 SRIRNESGATIKVYGGKGEQKQRQIQFGGSAQQVALAKQRVDEYVYSQLIQQADAQQAA 318

[Close]

BLAST of Cp4.1LG17g10430 vs. TrEMBL
Match: K7MUI8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G245600 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 2.0e-95
Identity = 217/358 (60.61%), Postives = 252/358 (70.39%), Query Frame = 1


Query: 64  GDIPVYPSMP-----AKAPLPVSMPLPGTVLV--SKPGHAVTGKRRREDDPIVPYSEAVD 123
           G IP+ P +P     A  P+P+ MPLP  + +  S    A +  +RR DD     + A D
Sbjct: 5   GQIPINPMLPPQNPMATMPMPMHMPLPMPLQIPFSAQDTAPSSGKRRRDDEAPGTAAAPD 64

Query: 124 VSAPKRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVI 183
            SA KR AK  DV+FRIV PS+ IGKVIGK G RIQK+RE+TKATIKIADA+AR+EERVI
Sbjct: 65  QSAAKR-AKGQDVIFRIVVPSRHIGKVIGKEGHRIQKIREDTKATIKIADAIARHEERVI 124

Query: 184 IISSKDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSL 243
           IISSKD +  VTDAEKAL+QIA LILKED +S++  KV  GHVAANT+RLLIAGSQAG L
Sbjct: 125 IISSKDNDEKVTDAEKALEQIAHLILKEDDSSLDASKVTAGHVAANTIRLLIAGSQAGGL 184

Query: 244 IGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQL 303
           IG SGQNIEKLR+SSGAS+T+LAPNQLPLCASAHESDRVVQ+SGDVPAV+KALEEIG QL
Sbjct: 185 IGTSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGDVPAVMKALEEIGCQL 244

Query: 304 RK------INL-------------------AVNYVTFEMLISETLVGGLIGIGGFNISRI 363
           R+      I++                   +V+YVTFEMLISET+VGGLIG  G NISRI
Sbjct: 245 RENPPRQVISISPTYNYAAIRPSQPYLDPTSVDYVTFEMLISETMVGGLIGRCGSNISRI 304

Query: 364 RNESGATIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTALQ 369
           RNESGA IK                     VALAKQRVDEYIYSQL++Q G Q +A Q
Sbjct: 305 RNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQTGTQQSAFQ 361

[Close]

BLAST of Cp4.1LG17g10430 vs. TrEMBL
Match: V7B4A4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G051300g PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 4.5e-95
Identity = 207/341 (60.70%), Postives = 247/341 (72.43%), Query Frame = 1


Query: 72  MPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQAKAHDVLF 131
           +P +  +P+ MPL     V  P  A +GKRRRED+   P + A    +  ++AK  DV+F
Sbjct: 40  LPMQMQMPLPMPLQVPFSVHDPAAASSGKRRREDE--APGTAAATEQSAAKRAKGQDVIF 99

Query: 132 RIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAE 191
           RIV PS+QIGKVIGK GCRIQ++RE+TKATIKIADA+AR+EERVIIISSKD +  +TDAE
Sbjct: 100 RIVVPSRQIGKVIGKEGCRIQRIREDTKATIKIADAIARHEERVIIISSKDNDEKLTDAE 159

Query: 192 KALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSS 251
           KAL+QIA LILKED +S++  KV  GHVAANT+RLLIAGSQAG LIG SGQNIEKLR+SS
Sbjct: 160 KALEQIAHLILKEDDSSLDLSKVAAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRDSS 219

Query: 252 GASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRK------INL---- 311
           GAS+T+LAPNQLPLCASAHESDRVVQ+SGDVP+V+KAL+EIG QLR+      I++    
Sbjct: 220 GASITVLAPNQLPLCASAHESDRVVQLSGDVPSVMKALDEIGCQLRENPPRQVISISPTY 279

Query: 312 ---------------AVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK------ 367
                          +V+YVTFEMLISET+VGGLIG  G NISRIRNESGA IK      
Sbjct: 280 NYASIRPSQPYLDPTSVDYVTFEMLISETMVGGLIGRCGSNISRIRNESGAMIKVYGGKG 339

[Close]

BLAST of Cp4.1LG17g10430 vs. TAIR10
Match: AT5G15270.2 (AT5G15270.2 RNA-binding KH domain-containing protein)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-20
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1


Query: 128 DVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVI-IISSKDKENT 187
           D +FR + P K+IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S  D+ N 
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 188 VTDAEK-------ALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGA 247
             D EK       AL +I   ++ +D  S E+   G   V   T +LL+   Q G ++G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGR 168

Query: 248 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRK 299
            GQ ++ +R+ +GA + I+    +PLCA    SD ++QISG+V  V KAL +I ++L +
Sbjct: 169 GGQIVQNIRSETGAQIRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHE 221

[Close]

BLAST of Cp4.1LG17g10430 vs. TAIR10
Match: AT4G26000.1 (AT4G26000.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-17
Identity = 56/172 (32.56%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 128 DVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTV 187
           D +FR++ P  ++G +IG+ G  I+K+ EET+A IK+ D      +R+++IS K++    
Sbjct: 73  DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132

Query: 188 TDAEKALQQIAALILKEDGT-SIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEK 247
                A+  +  +  +  G    ++  V       ++VRLL+A +QA +LIG  G  I+ 
Sbjct: 133 MSP--AMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKS 192

Query: 248 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRK 299
           +  +SGASV IL+  + P  A+  + +R+V + G+   +LKALE I   LR+
Sbjct: 193 IVENSGASVRILSEEETPFYAA--QDERIVDLQGEALKILKALEAIVGHLRR 240

[Close]

BLAST of Cp4.1LG17g10430 vs. TAIR10
Match: AT3G04610.1 (AT3G04610.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-17
Identity = 66/218 (30.28%), Postives = 117/218 (53.67%), Query Frame = 1


Query: 104 EDDPIVP-YSEAVDVSAPKRQAKAH-----------DVLFRIVAPSKQIGKVIGKVGCRI 163
           ED+  +P + E++  S P+  A              + +FR++ P++++G +IG+ G  I
Sbjct: 150 EDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVI 209

Query: 164 QKVREETKATIKIADAVARYEERVIIISSKDK-ENTVTDAEKALQQIAALILKEDGTSIE 223
           +K+ EET+A IKI D      ER +++S K++ E+++  +   L ++   I+  DG   E
Sbjct: 210 KKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGE 269

Query: 224 ELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAH 283
             +       +   RLL+  SQAGSLIG  G  ++ ++ +S   V +L    LP+ A   
Sbjct: 270 ASQAPPPSKVST--RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL-- 329

Query: 284 ESDRVVQISGDVPAVLKALEEIGNQLRKINLAVNYVTF 309
           + DRVV++ G+  +V +ALE I + LRK  +  + + F
Sbjct: 330 QDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPF 361

[Close]

BLAST of Cp4.1LG17g10430 vs. TAIR10
Match: AT1G51580.1 (AT1G51580.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-15
Identity = 55/184 (29.89%), Postives = 99/184 (53.80%), Query Frame = 1


Query: 116 DVSAPKRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERV 175
           DV    R     +V FR++ P+ ++G +IGK G  ++ ++ E+ A+IK++D     EER+
Sbjct: 263 DVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERI 322

Query: 176 IIISSKDK-ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAG 235
           I+IS+++  E   + A+  + ++   I          +++G    AA   RLL+     G
Sbjct: 323 IVISARENLERRHSLAQDGVMRVHNRI----------VEIGFEPSAAVVARLLVHSPYIG 382

Query: 236 SLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGN 295
            L+G  G  I ++R ++GAS+ + A +Q     S H  D +VQ+ G++  V  AL +I  
Sbjct: 383 RLLGKGGHLISEMRRATGASIRVFAKDQATKYESQH--DEIVQVIGNLKTVQDALFQILC 434

Query: 296 QLRK 299
           +LR+
Sbjct: 443 RLRE 434

[Close]

BLAST of Cp4.1LG17g10430 vs. TAIR10
Match: AT5G64390.3 (AT5G64390.3 RNA-binding KH domain-containing protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14
Identity = 55/171 (32.16%), Postives = 99/171 (57.89%), Query Frame = 1


Query: 128 DVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS-SKDKENT 187
           DV+F+I+  ++  G VIG  G  ++ +  ET A I + + +   EER+I ++ S++ E  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 188 VTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEK 247
            + A+KA+  I + + +     I    +  G  ++ T RL++  SQ G ++G  G  + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKI----LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 570

Query: 248 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLR 298
           +R ++GA++ IL   Q P C S  E+D+VVQI+G+ P V +A+  I ++LR
Sbjct: 571 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLR 615

[Close]

BLAST of Cp4.1LG17g10430 vs. NCBI nr
Match: gi|307136423|gb|ADN34230.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 525.4 bits (1352), Expect = 8.0e-146
Identity = 285/328 (86.89%), Postives = 296/328 (90.24%), Query Frame = 1


Query: 64  GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQ 123
           GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDD IV  S+A DVSAPKRQ
Sbjct: 4   GDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAPKRQ 63

Query: 124 AKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 183
           AKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 123

Query: 184 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQN 243
           EN+VTDAEKALQQIAALILKEDG+SIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQN
Sbjct: 124 ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 244 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKINLAV 303
           IEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLRK NLAV
Sbjct: 184 IEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRKTNLAV 243

Query: 304 NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK---------------------VA 363
           NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIK                     VA
Sbjct: 244 NYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQIQFGGSAEQVA 303

Query: 364 LAKQRVDEYIYSQLMRQAGVQPTALQMW 371
           LAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 304 LAKQRVDEYIYSQVIRQAGVQQTALQMW 331

[Close]

BLAST of Cp4.1LG17g10430 vs. NCBI nr
Match: gi|659119648|ref|XP_008459768.1| (PREDICTED: poly(rC)-binding protein 4-like [Cucumis melo])

HSP 1 Score: 503.1 bits (1294), Expect = 4.3e-139
Identity = 282/354 (79.66%), Postives = 295/354 (83.33%), Query Frame = 1


Query: 64  GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQ 123
           GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDD IV  S+A DVSAPKRQ
Sbjct: 4   GDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAPKRQ 63

Query: 124 AKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 183
           AKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 123

Query: 184 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQN 243
           EN+VTDAEKALQQIAALILKEDG+SIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQN
Sbjct: 124 ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 244 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKIN--- 303
           IEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLR +N   
Sbjct: 184 IEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLR-VNPPR 243

Query: 304 -----------------------LAVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 363
                                   +VNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA
Sbjct: 244 QVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 303

Query: 364 TIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTALQMW 371
           TIK                     VALAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 304 TIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Cp4.1LG17g10430 vs. NCBI nr
Match: gi|778712033|ref|XP_011656837.1| (PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Cucumis sativus])

HSP 1 Score: 502.7 bits (1293), Expect = 5.6e-139
Identity = 281/354 (79.38%), Postives = 295/354 (83.33%), Query Frame = 1


Query: 64  GDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQ 123
           GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDD IV  S+A D+SAPKRQ
Sbjct: 4   GDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDISAPKRQ 63

Query: 124 AKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 183
           AKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 123

Query: 184 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQN 243
           EN+VTDAEKALQQIAALILKEDG+SIEELKVGTGHVAANT+RLLIAGSQAGSLIGASGQN
Sbjct: 124 ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 244 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRKIN--- 303
           IEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLR +N   
Sbjct: 184 IEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLR-VNPPR 243

Query: 304 -----------------------LAVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 363
                                   +VNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA
Sbjct: 244 QVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 303

Query: 364 TIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTALQMW 371
           TIK                     VALAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 304 TIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Cp4.1LG17g10430 vs. NCBI nr
Match: gi|703072516|ref|XP_010089305.1| (KH domain-containing protein [Morus notabilis])

HSP 1 Score: 371.7 bits (953), Expect = 1.5e-99
Identity = 212/299 (70.90%), Postives = 234/299 (78.26%), Query Frame = 1


Query: 91  SKPGHAVTGKRRREDDPIVPYSEAVD--VSAPKRQAKAHDVLFRIVAPSKQIGKVIGKVG 150
           S+ G + +GKR RED+   P     D   SAPKR+AKA DVLFRIV PS QIGKVIGK G
Sbjct: 20  SETGQSSSGKRSREDEAPPPGGGEDDESYSAPKRRAKAQDVLFRIVVPSSQIGKVIGKEG 79

Query: 151 CRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAEKALQQIAALILKEDGTS 210
           CRI+K+RE+T+AT+KIADAVAR+EERVIIISSK  +N V+DAE A QQIA LILKED +S
Sbjct: 80  CRIRKIREDTRATVKIADAVARHEERVIIISSKYSDNQVSDAENAFQQIATLILKEDDSS 139

Query: 211 IEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCAS 270
           +E  KVG GHVAANT+RLLIAGSQAGSLIG SGQNIEKLRNSSGAS+T+LA NQLP CAS
Sbjct: 140 VEAAKVGAGHVAANTIRLLIAGSQAGSLIGMSGQNIEKLRNSSGASITVLAQNQLPSCAS 199

Query: 271 AHESDRVVQISGDVPAVLKALEEIGNQLRKINLAVNYVTFEMLISETLVGGLIGIGGFNI 330
           AHESDRVVQISGDV AVLKALEEIG QLR  NLAV+YVTFEM ISETLVGGLIG  G NI
Sbjct: 200 AHESDRVVQISGDVHAVLKALEEIGCQLRTNNLAVDYVTFEMAISETLVGGLIGRSGSNI 259

Query: 331 SRIRNESGATIK---------------------VALAKQRVDEYIYSQLMRQAGVQPTA 367
           SRIRNESGATIK                     VALAKQRVDEY+YSQL++QA  Q  A
Sbjct: 260 SRIRNESGATIKVYGGKGEQKQRQIQFGGSAQQVALAKQRVDEYVYSQLIQQADAQQAA 318

[Close]

BLAST of Cp4.1LG17g10430 vs. NCBI nr
Match: gi|645253106|ref|XP_008232425.1| (PREDICTED: poly(rC)-binding protein 4-like [Prunus mume])

HSP 1 Score: 369.8 bits (948), Expect = 5.7e-99
Identity = 221/352 (62.78%), Postives = 252/352 (71.59%), Query Frame = 1


Query: 71  SMPAKAPLPVSMPLPGTVLV----SKPGHAVTGKRRREDD--PIVPYSEAVDVSAPKRQA 130
           + P + P+   + +P T L+    S+P  + T KRRRED+  P++   E  +  A KR+A
Sbjct: 2   AQPGQLPIHPQIQMPPTTLIPITGSEPAQSATLKRRREDEYPPVLAGPEPQEPGA-KRRA 61

Query: 131 KAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 190
           KA DV+FRIV PS+QIGKVIGK GCRIQK+REETKA IKIADA+AR+EERVIIISSKD +
Sbjct: 62  KAQDVIFRIVVPSRQIGKVIGKEGCRIQKIREETKANIKIADAIARHEERVIIISSKDSD 121

Query: 191 NTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGASGQNI 250
           N  TDAEKALQQIA LILKED +  E  KVG GHVAANT+RLLIAGSQAGSLIG SGQNI
Sbjct: 122 NASTDAEKALQQIAGLILKEDDSGAEAAKVGAGHVAANTIRLLIAGSQAGSLIGMSGQNI 181

Query: 251 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRK------ 310
           EKLRNSSGA++TILAPNQLPLCASAHESDRVVQ+SGDVPAVLKALEEIG+QLR+      
Sbjct: 182 EKLRNSSGATITILAPNQLPLCASAHESDRVVQVSGDVPAVLKALEEIGDQLRENPPRQV 241

Query: 311 --INLAVN-------------------YVTFEMLISETLVGGLIGIGGFNISRIRNESGA 369
             I+ A N                   Y+TFEM+ISETLVGGLIG  G NI RIRNESGA
Sbjct: 242 ISISPAYNYTTIRPPQVQPYMDPTSAEYITFEMVISETLVGGLIGRCGSNIQRIRNESGA 301

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEP_ARATH	3.5e-16	32.56	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP P...	[more]
FLK_ARATH	1.0e-15	30.28	Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1	[more]
HEN4_ARATH	2.1e-13	32.16	KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1	[more]
Y4837_ARATH	8.9e-12	33.51	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2...	[more]
PCBP3_MOUSE	4.2e-09	33.80	Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3	[more]

BLAST of Cp4.1LG17g10430 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCN1_CUCME	5.6e-146	86.89	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KCF8_CUCSA	3.9e-139	79.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103530 PE=4 SV=1	[more]
W9QHY9_9ROSA	1.0e-99	70.90	KH domain-containing protein OS=Morus notabilis GN=L484_021836 PE=4 SV=1	[more]
K7MUI8_SOYBN	2.0e-95	60.61	Uncharacterized protein OS=Glycine max GN=GLYMA_18G245600 PE=4 SV=1	[more]
V7B4A4_PHAVU	4.5e-95	60.70	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G051300g PE=4 SV=1	[more]

BLAST of Cp4.1LG17g10430 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15270.2	7.3e-20	35.75	RNA-binding KH domain-containing protein	[more]
AT4G26000.1	2.0e-17	32.56	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	5.8e-17	30.28	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	9.2e-15	29.89	RNA-binding KH domain-containing protein	[more]
AT5G64390.3	1.2e-14	32.16	RNA-binding KH domain-containing protein	[more]

BLAST of Cp4.1LG17g10430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136423\|gb\|ADN34230.1\|	8.0e-146	86.89	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659119648\|ref\|XP_008459768.1\|	4.3e-139	79.66	PREDICTED: poly(rC)-binding protein 4-like [Cucumis melo]	[more]
gi\|778712033\|ref\|XP_011656837.1\|	5.6e-139	79.38	PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Cucumis sativus...	[more]
gi\|703072516\|ref\|XP_010089305.1\|	1.5e-99	70.90	KH domain-containing protein [Morus notabilis]	[more]
gi\|645253106\|ref\|XP_008232425.1\|	5.7e-99	62.78	PREDICTED: poly(rC)-binding protein 4-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10430.1	Cp4.1LG17g10430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 304..357 score: 0.53coord: 220..297 score: 7.5E-9coord: 127..202 score: 1.
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 121..201 score: 4.9E-14coord: 222..298 score: 1.3E-15coord: 305..343 score: 4.
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 132..195 score: 1.9E-9coord: 307..342 score: 1.7E-6coord: 223..292 score: 1.1
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 305..341 score: 11.112coord: 128..194 score: 14.026coord: 221..292 score: 14
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 127..201 score: 1.12E-11coord: 304..342 score: 1.82E-7coord: 216..298 score: 4.38
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 100..363 score: 5.9E
None	No IPR available	PANTHER	PTHR10288:SF159	SUBFAMILY NOT NAMED	coord: 100..363 score: 5.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g10430	Cucsa.349900	Cucumber (Gy14) v1	cgycpeB0910
Cp4.1LG17g10430	CmaCh17G005150	Cucurbita maxima (Rimu)	cmacpeB381
Cp4.1LG17g10430	CmaCh08G001390	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g10430	CmoCh08G001400	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g10430	CmoCh17G004870	Cucurbita moschata (Rifu)	cmocpeB344
Cp4.1LG17g10430	Cla006706	Watermelon (97103) v1	cpewmB337
Cp4.1LG17g10430	Csa6G103530	Cucumber (Chinese Long) v2	cpecuB318
Cp4.1LG17g10430	MELO3C022266	Melon (DHL92) v3.5.1	cpemeB287
Cp4.1LG17g10430	ClCG06G002610	Watermelon (Charleston Gray)	cpewcgB301
Cp4.1LG17g10430	CSPI06G08150	Wild cucumber (PI 183967)	cpecpiB319
Cp4.1LG17g10430	Lsi09G016770	Bottle gourd (USVL1VR-Ls)	cpelsiB251
Cp4.1LG17g10430	MELO3C022266.2	Melon (DHL92) v3.6.1	cpemedB335
Cp4.1LG17g10430	CsaV3_6G008530	Cucumber (Chinese Long) v3	cpecucB0397
Cp4.1LG17g10430	Bhi12G001969	Wax gourd	cpewgoB0384
Cp4.1LG17g10430	CsGy6G008220	Cucumber (Gy14) v2	cgybcpeB778
Cp4.1LG17g10430	Carg26737	Silver-seed gourd	carcpeB0198
Cp4.1LG17g10430	Carg04966	Silver-seed gourd	carcpeB0125

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG17g10430	Cp4.1LG12g04450	Cucurbita pepo (Zucchini)	cpecpeB163

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g10430	Melon (DHL92) v3.6.1	cpemedB336
Cp4.1LG17g10430	Melon (DHL92) v3.6.1	cpemedB373
Cp4.1LG17g10430	Cucumber (Chinese Long) v3	cpecucB0391
Cp4.1LG17g10430	Cucumber (Chinese Long) v3	cpecucB0408
Cp4.1LG17g10430	Cucumber (Gy14) v1	cgycpeB0912
Cp4.1LG17g10430	Cucurbita maxima (Rimu)	cmacpeB390
Cp4.1LG17g10430	Cucurbita moschata (Rifu)	cmocpeB354
Cp4.1LG17g10430	Wild cucumber (PI 183967)	cpecpiB332
Cp4.1LG17g10430	Wild cucumber (PI 183967)	cpecpiB328
Cp4.1LG17g10430	Cucumber (Chinese Long) v2	cpecuB327
Cp4.1LG17g10430	Cucumber (Chinese Long) v2	cpecuB331
Cp4.1LG17g10430	Bottle gourd (USVL1VR-Ls)	cpelsiB253
Cp4.1LG17g10430	Watermelon (Charleston Gray)	cpewcgB302
Cp4.1LG17g10430	Watermelon (97103) v1	cpewmB344
Cp4.1LG17g10430	Melon (DHL92) v3.5.1	cpemeB288
Cp4.1LG17g10430	Cucumber (Gy14) v2	cgybcpeB359
Cp4.1LG17g10430	Cucumber (Gy14) v2	cgybcpeB788