Cp4.1LG17g10380 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g10380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Sec20 family protein
Location	Cp4.1LG17 : 7883808 .. 7887057 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTATTATTATTTATTTATTTATTTATTTATATCAAATTATTATTTGAAACAATCCCGGTGTAGCGGCGTTCTTCAGTAATCTTCTGTTCTAAAGCCTCGAAGGATCAAATCTATCTCATATATTGTTTTCATTCTGAATTCTGGGCTACCGAAGACCAAATTTCTGTGATTTCGGTGATTTTCCTTCACATCTTGAAATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTCGACCGGATTAAGGCAATTGAATCGTACAAGAAACAAAGTGGATCGACGGACACGAATTCTCTACCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTGCTCGAATCTTGGAAAAATCAATCCCACAAGTAACGAATCTATCTCTTACTTTCTGATTCCTGTGGAAGAGGAGTGGAATTACTGGAATCGCTCCTTTCTGTAATTCTTCGGCGATGAAAGTGATCGGTGATTGTCATCTGGTTGTAATGCGTTTTGTTTTTGCAACTTTGTGTGTATTTGCTTCAGTCTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCAGCTCAGGAGGAGGTGATTAATTCGAACTGGTTTTGTTAAATTGTGATGAACAGTTTCTGATTAGCCCTAGTTTTCTTAGTGATCAAATGCGGTATTTCTCCATGATTTCCTAAATGTGAAGGTTTATATAAGATTCCATTACTTCTTCAAAGTGAAAATTTACAGTGTGCTCAGAATTTTGGTGAATTTGCAGAGAGAACAACTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAGTATGTTGTCAAAACTTAAACGTTTTCAGAAGTTTTACCTAATTCTTTCTTTAAACTGTCTTATTGAACTTCATTGTTTCTCTCCTTTTGCAGAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGTCTGTTTCTGGTGTTTTCGTTCTATTTACTTTGATCTTGATTGAATTTTAAATTTTCTTTCTTTTAACAATGGAATGTTCTTGTATATCTTATTATCTGTAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGGTATGTTTATGAAAATCTGCATATGTCATTCGTGTTCCGTTTCGAGTCGATTAGTCAGTTTTACTTTGTTCAGTGTGTTCAATTATATCTTGATGGTAGAGATTACAAAGCAAATGAACTTGTAAGAATATGCTGTAAACCATGTATAGCAGTGGCAGCCATGATCATATCTTAAGCTAAGCAATAAAAGGGAAATTCCACAGTTGTAGATTTTATTCATTCCCTCAGTTGAGTAACTTAGTGTTTATTTATACATGAAAATCTTTGTTTAGCATTTAATATGAGTAATAACCATCTCATATAGTGATCTAGAACTACATTAGTCATCTTGATCCTAGGGAAATGATAAGGAAATGAATGAGGCAACTTGGATCTATAGTCTTTTCATTCATTTGTTACGTGGACTGGACCGTCGGGAAACCCAGATTAAATCCGATTGTTCTGCTGTTTGCTTAGGCTAGGACTAGTTATGTAAGCATAGTTTAGAAATTTATGATATGTATGCAAGCCAAATTATGACCATGATGTCTTGCCGAAGGAGTTGTCGCCCATTACCAAGAATAGGAAAAGAAACGGATAGAGTTCGAGTCATAACAACTCAAAGCAAAGAATCGAAATATATACCAAGCTCCAAACCTTTTTCCAGGACTCCTCAAATACTAAAGGAGATCTTACTTTCCTTTCAAGCCCAATGAACCAAATAGCGGTAAGGATTATGCCTTGCCGAAGGAGTTTTCGCCTATCACGTAAAGGGGATTCATAAGAACCTCTTCCATTATAGCACGACGAGGATTATCGTATGTAGAGCACCAAAACAGGGGATTTAAAAGATGGTCCTCAATGATGGGACATTTTTATGCTGTTATGATCTTAGTTTAGACTAGATTTTTTAAAATCATATGATAAAGCACCAGCAGATGGTACTGTTTCTCTGAATGATTTCATGGAACTGTGGTCAACAAGTAGAGCTTACTTTACATGTTTATTTGGCTTTTACAGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATACAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGTAAATAGATGATTACTTGCAACCTCTCTAAATAAAAGTTCTTTCATAGGTTAAATTACAAATCAAGTTGATTTTAACTATGATGATTATATCGATTTAGTCCATAATTTTAAAAAGCTTTAATTGTTTTCTGAATTTTGAATTTCGATTCTATATCGTCTTTATTGTTAACAGTGTTGGTTAAGTAGTGATGTAACATGTCTGAGTAGAGACAGATGTTGTTCTGTACAACATGATGGATATATAGAAGAAATTGACTACAAAATAGAATGATAATCTAGAAAATATGATTTGATACATTGCTTCAAATAGATATTCATCGAAGTTTTAGAACTAAATTTGTAATTCAACCTCCTTTTATGCTAAATCTAAAAATGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCGAAACGTATTGGGTACTGAAGTTGCAGAGGATGGCCACTGCTGCCATCAAAGCTGGGATGGTCAAGCAAGCAAATCACATTCCTAGAGATGGTGGTAGGAATCCAGTTCAAGCCAACGAGGAGGATTTAATTCACAGAGTTGCAGATCCACAGGAACGACGTGTTTGGGATGAACTTTGAAGCATTGTATACATTGGGATAAAGGGATATGGTCAAATTGCATATCTCCAGAGTTATATCCTTTTCTGGCCACAGTTTTGAAGTATAACATTTCGACCATGGTTTCCTGTGTAGTAAAATTCCGAGTTCAGTCTGAAAATGATTTAAACAGTGTACTTGTGTGGGAAAAACTACCCATTAAAGAAGACACCTTTTTGGCTGTGTTAGACAACATTAGTAAATATTCTTTGTGTAAGAACTTTAAGCCGGCTATTTTCTTCTTC

mRNA sequence

ATTATTATTATTATTTATTTATTTATTTATTTATATCAAATTATTATTTGAAACAATCCCGGTGTAGCGGCGTTCTTCAGTAATCTTCTGTTCTAAAGCCTCGAAGGATCAAATCTATCTCATATATTGTTTTCATTCTGAATTCTGGGCTACCGAAGACCAAATTTCTGTGATTTCGGTGATTTTCCTTCACATCTTGAAATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTCGACCGGATTAAGGCAATTGAATCGTACAAGAAACAAAGTGGATCGACGGACACGAATTCTCTACCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTGCTCGAATCTTGGAAAAATCAATCCCACAATCTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCAGCTCAGGAGGAGAGAGAACAACTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATACAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCGAAACGTATTGGGTACTGAAGTTGCAGAGGATGGCCACTGCTGCCATCAAAGCTGGGATGGTCAAGCAAGCAAATCACATTCCTAGAGATGGTGGTAGGAATCCAGTTCAAGCCAACGAGGAGGATTTAATTCACAGAGTTGCAGATCCACAGGAACGACGTGTTTGGGATGAACTTTGAAGCATTGTATACATTGGGATAAAGGGATATGGTCAAATTGCATATCTCCAGAGTTATATCCTTTTCTGGCCACAGTTTTGAAGTATAACATTTCGACCATGGTTTCCTGTGTAGTAAAATTCCGAGTTCAGTCTGAAAATGATTTAAACAGTGTACTTGTGTGGGAAAAACTACCCATTAAAGAAGACACCTTTTTGGCTGTGTTAGACAACATTAGTAAATATTCTTTGTGTAAGAACTTTAAGCCGGCTATTTTCTTCTTC

Coding sequence (CDS)

ATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTCGACCGGATTAAGGCAATTGAATCGTACAAGAAACAAAGTGGATCGACGGACACGAATTCTCTACCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTGCTCGAATCTTGGAAAAATCAATCCCACAATCTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCAGCTCAGGAGGAGAGAGAACAACTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATACAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCGAAACGTATTGGGTACTGA

Protein sequence

MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGY

Homology

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BLAST of Cp4.1LG17g10380 vs. TrEMBL
Match: E5GCN4_CUCME (Vesicle transport protein SEC20 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.4e-110
Identity = 223/235 (94.89%), Postives = 228/235 (97.02%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFH TL+RIKAIESY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHHTLERIKAIESYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSE+EAAQSLLESWKNQS NLRSSLRNANMQAKANMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEIEAAQSLLESWKNQSQNLRSSLRNANMQAKANMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. TrEMBL
Match: A0A0A0KCG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104070 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.7e-109
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. TrEMBL
Match: A0A067KNF5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.4e-86
Identity = 185/245 (75.51%), Postives = 205/245 (83.67%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQ------SGSTDT----NSLPRLNAL 60
           MDKV EEV++VK EW++A+ +T   IKAIE Y K        G  D     NSLPRLN L
Sbjct: 1   MDKVVEEVEKVKKEWDEAYAKTQGHIKAIEEYGKSRRGGGGEGEVDATKEKNSLPRLNGL 60

Query: 61  AQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANM 120
           AQDGL LL SL+FKLDLLAPQL ++  V++AQ LLESWK Q  N+R SLRNAN+QAKANM
Sbjct: 61  AQDGLALLQSLQFKLDLLAPQLPTEENVKSAQVLLESWKKQCQNVRVSLRNANLQAKANM 120

Query: 121 RKAAQEEREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTI 180
           RKAAQEERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER+AST+
Sbjct: 121 RKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSASTL 180

Query: 181 ETFEESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVV 236
            TFEESTGVL+KAE+EYKGHRSLL RTRNLLSTMQRQDV+DR+ILA+GF  FS AVLYVV
Sbjct: 181 MTFEESTGVLRKAETEYKGHRSLLMRTRNLLSTMQRQDVIDRVILAIGFILFSCAVLYVV 240

[Close]

BLAST of Cp4.1LG17g10380 vs. TrEMBL
Match: B9SQR6_RICCO (Vesicle transport protein SEC20, putative OS=Ricinus communis GN=RCOM_1216820 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.4e-86
Identity = 183/243 (75.31%), Postives = 204/243 (83.95%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQ--------SGSTDTNSLPRLNALAQ 60
           M+K+ E V++VK EW +A+ +  D IKAIE Y K         S     NSLPRLN LAQ
Sbjct: 1   MEKIEEAVEKVKKEWEEAYSKMKDHIKAIEGYGKSTRLNGGVASQEETVNSLPRLNGLAQ 60

Query: 61  DGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRK 120
           DGL +L SL+FKLDLLAPQL +  +V +AQSLLESWK Q  NLR SLRNAN+QAKANMRK
Sbjct: 61  DGLAVLKSLQFKLDLLAPQLPTHEDVNSAQSLLESWKTQFQNLRLSLRNANLQAKANMRK 120

Query: 121 AAQEEREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIET 180
           AAQE+RE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRR+RQLMVQEVER+AS++ T
Sbjct: 121 AAQEQRELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRSRQLMVQEVERSASSLVT 180

Query: 181 FEESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSK 236
           FEESTGVL+KAESEYKGHRSLLTRTRNLLSTMQRQDV+DR+ILAVGFF FS AVLYVVSK
Sbjct: 181 FEESTGVLRKAESEYKGHRSLLTRTRNLLSTMQRQDVLDRMILAVGFFLFSCAVLYVVSK 240

[Close]

BLAST of Cp4.1LG17g10380 vs. TrEMBL
Match: W9S5Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009713 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.1e-85
Identity = 180/239 (75.31%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTN----SLPRLNALAQDGLN 60
           MD+V E+V++ K EW++A+ + +++IKAIE+Y K S +        SLPR+N +AQD L 
Sbjct: 1   MDEVEEQVEKAKKEWDEAYVKLVEQIKAIEAYGKSSSTESEGKSKYSLPRMNGVAQDCLA 60

Query: 61  LLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQE 120
           LL+SL+FKLDLLAPQL SD +V++A+SLLESW N+S +LRSSLRNAN+QAKANMRKAAQE
Sbjct: 61  LLNSLQFKLDLLAPQLPSDDKVQSAKSLLESWTNRSQSLRSSLRNANLQAKANMRKAAQE 120

Query: 121 EREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEES 180
           ERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTAS + T EES
Sbjct: 121 ERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASVLMTNEES 180

Query: 181 TGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           TGVL+KAESEY+GHRSLL RTRNLLSTMQRQDV+DR+ILAVGFF FS AVLYVVSKRIG
Sbjct: 181 TGVLRKAESEYRGHRSLLMRTRNLLSTMQRQDVLDRVILAVGFFLFSCAVLYVVSKRIG 239

[Close]

BLAST of Cp4.1LG17g10380 vs. TAIR10
Match: AT3G24315.1 (AT3G24315.1 Sec20 family protein)

HSP 1 Score: 290.4 bits (742), Expect = 9.8e-79
Identity = 162/238 (68.07%), Postives = 193/238 (81.09%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQ---SGSTDTNSLPRLNALAQDGLNL 60
           MD+V  EV++ K EW +A+ +T+  I +I+ Y K     G  +  SL RLN LAQDGL+L
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 60

Query: 61  LSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEE 120
           L+SL+F LDLLAPQL SD +V++ QSLLE+WKNQ H+LR +LR+AN+QAK NMRKAAQEE
Sbjct: 61  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 120

Query: 121 REQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEEST 180
           RE LLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +T+  F+EST
Sbjct: 121 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 180

Query: 181 GVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           GVLKKAESEYKGHRSLL+RTRNLLSTMQRQDV+DRIIL VGF  F  AV+YVVSKRIG
Sbjct: 181 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIG 238

[Close]

BLAST of Cp4.1LG17g10380 vs. NCBI nr
Match: gi|659119656|ref|XP_008459773.1| (PREDICTED: vesicle transport protein SEC20 [Cucumis melo])

HSP 1 Score: 405.2 bits (1040), Expect = 7.7e-110
Identity = 223/235 (94.89%), Postives = 228/235 (97.02%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFH TL+RIKAIESY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHHTLERIKAIESYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSE+EAAQSLLESWKNQS NLRSSLRNANMQAKANMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEIEAAQSLLESWKNQSQNLRSSLRNANMQAKANMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. NCBI nr
Match: gi|778712038|ref|XP_011656838.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212139 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 3.8e-109
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. NCBI nr
Match: gi|700191295|gb|KGN46499.1| (hypothetical protein Csa_6G104070 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 3.8e-109
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. NCBI nr
Match: gi|1009158168|ref|XP_015897146.1| (PREDICTED: uncharacterized protein LOC107430797 [Ziziphus jujuba])

HSP 1 Score: 335.5 bits (859), Expect = 7.5e-89
Identity = 183/235 (77.87%), Postives = 207/235 (88.09%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKV EEV++ K EW++ + + +++IKAIE Y K  G    +SLPR+N LAQDGL LL+S
Sbjct: 1   MDKVVEEVEKAKKEWDETYSKVVEQIKAIEGYAKSVGVEKKDSLPRMNGLAQDGLALLNS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           L+FKLDLLAPQL +D + ++A+SLLESWKNQS +LR SLRNAN+QAKANMRKAAQEERE 
Sbjct: 61  LQFKLDLLAPQLPTDEQAKSAKSLLESWKNQSQSLRLSLRNANLQAKANMRKAAQEEREL 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGG ESTIRRRNLQTKAGMTSAAE ITESLRRTRQLMVQEVER+AST+ TF+ESTGVL
Sbjct: 121 LLGGGGESTIRRRNLQTKAGMTSAAEGITESLRRTRQLMVQEVERSASTLMTFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           KKAESEYKGHRSLL RTRNLLSTMQRQDVMDRIILAVGFF F+ AVLYVVSKRIG
Sbjct: 181 KKAESEYKGHRSLLMRTRNLLSTMQRQDVMDRIILAVGFFLFACAVLYVVSKRIG 235

[Close]

BLAST of Cp4.1LG17g10380 vs. NCBI nr
Match: gi|657966283|ref|XP_008374827.1| (PREDICTED: vesicle transport protein SEC20 [Malus domestica])

HSP 1 Score: 333.6 bits (854), Expect = 2.9e-88
Identity = 181/239 (75.73%), Postives = 212/239 (88.70%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGS----TDTNSLPRLNALAQDGLN 60
           MDKV EEV++ K EW++A+   + +IKAIE Y + +G+    +  +SLPR+N LAQDGL+
Sbjct: 1   MDKVEEEVEKAKKEWDEAYSNVVQQIKAIEEYGESTGAATMVSQKDSLPRMNGLAQDGLS 60

Query: 61  LLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQE 120
           LL+SL+FKLDL APQL +D +V++A++LLESWKN+SH+LR SLRNAN+QAKANMRKAAQ+
Sbjct: 61  LLNSLQFKLDLFAPQLPTDDQVQSAKALLESWKNRSHSLRLSLRNANLQAKANMRKAAQK 120

Query: 121 EREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEES 180
           ERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER+A T+ TFEES
Sbjct: 121 ERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSAGTLMTFEES 180

Query: 181 TGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIG 236
           TGVLKKAESEYKGHRSLL RTRNLLSTMQRQDV+DR+IL +GFF FSLAVLYVVSKRIG
Sbjct: 181 TGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRLILVLGFFLFSLAVLYVVSKRIG 239

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10380 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCN4_CUCME	5.4e-110	94.89	Vesicle transport protein SEC20 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KCG9_CUCSA	2.7e-109	94.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104070 PE=4 SV=1	[more]
A0A067KNF5_JATCU	2.4e-86	75.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1	[more]
B9SQR6_RICCO	5.4e-86	75.31	Vesicle transport protein SEC20, putative OS=Ricinus communis GN=RCOM_1216820 PE...	[more]
W9S5Y3_9ROSA	2.1e-85	75.31	Uncharacterized protein OS=Morus notabilis GN=L484_009713 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g10380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24315.1	9.8e-79	68.07	Sec20 family protein	[more]

BLAST of Cp4.1LG17g10380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119656\|ref\|XP_008459773.1\|	7.7e-110	94.89	PREDICTED: vesicle transport protein SEC20 [Cucumis melo]	[more]
gi\|778712038\|ref\|XP_011656838.1\|	3.8e-109	94.04	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212139 [Cucumis sa...	[more]
gi\|700191295\|gb\|KGN46499.1\|	3.8e-109	94.04	hypothetical protein Csa_6G104070 [Cucumis sativus]	[more]
gi\|1009158168\|ref\|XP_015897146.1\|	7.5e-89	77.87	PREDICTED: uncharacterized protein LOC107430797 [Ziziphus jujuba]	[more]
gi\|657966283\|ref\|XP_008374827.1\|	2.9e-88	75.73	PREDICTED: vesicle transport protein SEC20 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005606	Sec20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044699	single-organism process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10380.1	Cp4.1LG17g10380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005606	Sec20	PFAM	PF03908	Sec20	coord: 143..234 score: 1.6
None	No IPR available	unknown	Coil	Coil	coord: 85..119 scor
None	No IPR available	PANTHER	PTHR12825	BNIP1-RELATED	coord: 1..236 score: 1.0
None	No IPR available	PANTHER	PTHR12825:SF0	VESICLE TRANSPORT PROTEIN SEC20	coord: 1..236 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g10380	Cucsa.121180	Cucumber (Gy14) v1	cgycpeB0296
Cp4.1LG17g10380	CmaCh08G001410	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g10380	CmoCh08G001420	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g10380	Cla006710	Watermelon (97103) v1	cpewmB337
Cp4.1LG17g10380	Csa6G104070	Cucumber (Chinese Long) v2	cpecuB318
Cp4.1LG17g10380	MELO3C022272	Melon (DHL92) v3.5.1	cpemeB287
Cp4.1LG17g10380	ClCG06G002570	Watermelon (Charleston Gray)	cpewcgB301
Cp4.1LG17g10380	CSPI06G08180	Wild cucumber (PI 183967)	cpecpiB319
Cp4.1LG17g10380	MELO3C022272.2	Melon (DHL92) v3.6.1	cpemedB335
Cp4.1LG17g10380	CsaV3_6G008560	Cucumber (Chinese Long) v3	cpecucB0397
Cp4.1LG17g10380	Bhi12G001972	Wax gourd	cpewgoB0384
Cp4.1LG17g10380	CsGy6G008250	Cucumber (Gy14) v2	cgybcpeB778
Cp4.1LG17g10380	Carg04968	Silver-seed gourd	carcpeB0125

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g10380	Silver-seed gourd	carcpeB0198
Cp4.1LG17g10380	Cucumber (Chinese Long) v3	cpecucB0408
Cp4.1LG17g10380	Cucurbita pepo (Zucchini)	cpecpeB163
Cp4.1LG17g10380	Cucumber (Gy14) v1	cgycpeB0912
Cp4.1LG17g10380	Cucurbita maxima (Rimu)	cmacpeB390
Cp4.1LG17g10380	Cucurbita maxima (Rimu)	cmacpeB381
Cp4.1LG17g10380	Cucurbita moschata (Rifu)	cmocpeB344
Cp4.1LG17g10380	Cucurbita moschata (Rifu)	cmocpeB354
Cp4.1LG17g10380	Wild cucumber (PI 183967)	cpecpiB332
Cp4.1LG17g10380	Wild cucumber (PI 183967)	cpecpiB328
Cp4.1LG17g10380	Cucumber (Chinese Long) v2	cpecuB327
Cp4.1LG17g10380	Cucumber (Chinese Long) v2	cpecuB331
Cp4.1LG17g10380	Bottle gourd (USVL1VR-Ls)	cpelsiB251
Cp4.1LG17g10380	Bottle gourd (USVL1VR-Ls)	cpelsiB253
Cp4.1LG17g10380	Watermelon (Charleston Gray)	cpewcgB302
Cp4.1LG17g10380	Watermelon (97103) v1	cpewmB344
Cp4.1LG17g10380	Melon (DHL92) v3.5.1	cpemeB288
Cp4.1LG17g10380	Cucumber (Gy14) v2	cgybcpeB788
Cp4.1LG17g10380	Melon (DHL92) v3.6.1	cpemedB336