CmoCh08G001420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G001420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Vesicle transport protein SEC20
Location	Cmo_Chr08 : 792571 .. 795758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCGTTCTTCAGTAATCTTCTGTTCTAAAGCCTCGAAGGATCAAATCTATCTCATAGATTGTTTTCATTCTGAATTCTGGGCTACCGAAGACCAAATTTCTGTGATTTCGGTGATTTTCCTTCACATCTTGAAATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTTGACCGGATTAAGGCAATCGAATCATACAAGAAACAAAGTGGATCGACGGACACGAATTCGCTCCCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTTCTCGAATCTTGGAAAAACCAATCCCACAAGTAACGAATCTAACTCCTACTTTCTGATTCCTGTGGAAGAGGAGTGGAATTACTGGAATCGCTCCTTTCTGTAATTCTTCGGCGATGAAAGTGATCGGTGATTGTCCTTTGGTTGTAATGAGTTTTGTTTTTGCAACTTCGTGTGTATTTGTTTCAGTTTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCTGCTCAGGAGGAGGTGATTAATTCCAACTGGTTTTGTTAAATTGTGATGAACAGTTTCTGATTAGCCCTAGTTTTCTGAATGATCAAATGCGGTATTTCTCCATGATTTCCTAAATGTGAAGATTTATATAAGATTCCATTACTTCTTCAAAGTGAAAATTTACAGTGTGCTCAGAATTTTGGTGAATTTGCAGAGAGAACAGCTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAGTTTGTTGTCAAAACTTAAACGTTTTGAGAAGTTTTATCTAATTCTTTCTTAAAACTGTCTTATTGAACTTCGTTGTTTCTCTCCTTTTGCAGAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGTCGGTTTCTGGTGTTTTCTGTTCTATTTACTTTGTGATCTTGATTGAATTTTAAATTTTCTTTCTCTTAACAATGGAATGTTCTTGTATATCTTATTATCTGTAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGGTACGTTTATGAAAATCTGCGTATGTCATTTGTGTTCCGTTTCGAGTCGATTAGTCAGTTTTACTTTGTTCAGTGTGTTCAATTATATCTTGATGGTAGAGATTACAAAGCAAATGAACTTGTAAGAATATGCTGTAAACCATGTATAGCAGTGGCAGCCATGATCATATCTTAAGCTAAGCAATAAAAGGGAAATTCCACAGTTGTAGATTTTATTCATTCCCTCAGTTGACAAACTGGAAACTAAGACATAACTTAGTGTTTATTTATACATGAAAATCTTTGTTTAGCATTTAATATGAGTAATTACCATCTCATATAGTGATCTAGAACTACATTAGTCATCTTGATCCTAGGGAAATGATAAGGAAATGAATGAGGCAACTTGGATCTATAGTCTTTTCATTCATTTGTTACGTGGACTGGACCGTCGGGAAACCCAGATTAAATCCGATTGTTCTGCTGTTTGCTTAGGCTAGGACTAGTTATGTAAGCATAGTTTAGAAATTTATGATATGTATGCAAGCCAAATTATGACCATGATGTCTTGCCGAAGGAGTTGTCGCCCATTACCAAGAATAGGAAAAGAAATGGATAGAGTTCGAGTCATAACAACTCAAAGCAAAGAATCGAAATATATACCAAGCTCCAAACCCTTTTCCAGGACTCCTCAAATACTAAGATAGATCTTGCTTTCCTTTCAAGCCCAATGAAGCAAATAGCGGTAAGGATTATGCCTTGTCGAAGGAGTTGTCGCCTATCACGTAATGGGGATTCATAAGAACCTCTTCCATTATAGCACGACGAGGATTATCGTGTATAGAGCACCAAAACAGGGGATTTAAAAGATGGTCCTCAATGATGGGACATTTTTAAGCTGTCATGATTTCTTAGTTTAGACTAGATTTTTTAAAATCATATGATAAAGCACCAGCAGATGGTACTGTTTCTCTGAATGATTTCATGGAACTGTGGTCAACAAGTAGAGCTTACTTTACATGTTTATTTGGCTTTTACAGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATATAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGTAAATAGATGATTACTTGCAACCCCTCTAAATAAAAGTTCTTTCATAGGTTAAATTACAAATCAATTTGATCTTAACTATGATGATTATATCGATTTAGTCCATAATTTTAAAAAGCTTTAATTGTTTTCTGAATTTTTGAATTTCGATTCTATTTCGTCTTTATTGTTAACAGTGTTTGAGTAGAGACCGATGTTGTTCTGTACAACATGATGGATATATAGAAGAAATTGACTATAAAATAGAATGATAATCTAGAAAATATGATTTGATACATTGCTTCAAATAGATATTCATCCAAGTTTTAGAACTAAATTTGTAATTCAACCTCCTTTTATGCTAAAAAAATCTTAAAATGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCCAAACGTATTGGGCTACTGAAGTTGCAGAGGATGGCCACTGCTGCCATCAAAGCTGGGATGGTCAAGCAAGCAAACCAAATTCCTAGAGATGGTGGTAGGAATCCAGTTCAAGCCAACGAGGATTTAATTCACAGAGTTGCAGAGCCACAGGAACGACGTGTTTGGGATGAACTTTGAAGCGTTGTATACATTGGGATATAAGGGATATGGTCAAATTGCATATCTCCAGAGTTATATCCTTTTCTGGCCACAGTTTTGAAGTATAACATTTCGACCATGGTTTCCTGTGTAGTAAAATTCCGAGTTCAGTCTGAAAATGATTTAAACAGTGTACTTGTGTGGGAAAAACTACCCATTAAAGAAGACACCTTTTTGACTGTGTTAGACAACATTAGTAAATATTCTTTGTGCAAGAACTTTAAGCCGGCTATTTTCTTCTCCAC

mRNA sequence

CGGCGTTCTTCAGTAATCTTCTGTTCTAAAGCCTCGAAGGATCAAATCTATCTCATAGATTGTTTTCATTCTGAATTCTGGGCTACCGAAGACCAAATTTCTGTGATTTCGGTGATTTTCCTTCACATCTTGAAATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTTGACCGGATTAAGGCAATCGAATCATACAAGAAACAAAGTGGATCGACGGACACGAATTCGCTCCCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTTCTCGAATCTTGGAAAAACCAATCCCACAATTTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCTGCTCAGGAGGAGAGAGAACAGCTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATATAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCCAAACGTATTGGGCTACTGAAGTTGCAGAGGATGGCCACTGCTGCCATCAAAGCTGGGATGGTCAAGCAAGCAAACCAAATTCCTAGAGATGGTGGTAGGAATCCAGTTCAAGCCAACGAGGATTTAATTCACAGAGTTGCAGAGCCACAGGAACGACGTGTTTGGGATGAACTTTGAAGCGTTGTATACATTGGGATATAAGGGATATGGTCAAATTGCATATCTCCAGAGTTATATCCTTTTCTGGCCACAGTTTTGAAGTATAACATTTCGACCATGGTTTCCTGTGTAGTAAAATTCCGAGTTCAGTCTGAAAATGATTTAAACAGTGTACTTGTGTGGGAAAAACTACCCATTAAAGAAGACACCTTTTTGACTGTGTTAGACAACATTAGTAAATATTCTTTGTGCAAGAACTTTAAGCCGGCTATTTTCTTCTCCAC

Coding sequence (CDS)

ATGGACAAGGTTGCAGAGGAGGTCGATCGGGTCAAAAATGAGTGGAACGACGCTTTCCATCAGACTCTTGACCGGATTAAGGCAATCGAATCATACAAGAAACAAAGTGGATCGACGGACACGAATTCGCTCCCGAGATTGAATGCTTTGGCTCAAGATGGTTTGAATCTGCTGTCGTCGTTGGAATTCAAGCTCGATCTTCTTGCGCCTCAACTGCTCTCTGATTCTGAAGTCGAGGCTGCTCAATCTCTTCTCGAATCTTGGAAAAACCAATCCCACAATTTGCGGTCGAGTCTGAGAAATGCCAATATGCAAGCGAAAGCCAACATGAGAAAAGCTGCTCAGGAGGAGAGAGAACAGCTTCTTGGTGGAGGAGAAGAGTCCACAATTCGCAGACGGAATTTACAAACTAAGGCTGGAATGACATCTGCTGCCGAAAGCATCACCGAGAGCCTTCGCCGAACCCGTCAGCTTATGGTTCAGGAGGTGGAAAGAACTGCAAGCACAATTGAGACTTTCGAGGAATCGACTGGAGTGTTAAAGAAGGCTGAGAGTGAATATAAGGGACACCGCTCGTTGTTAACACGAACCAGAAACTTACTTTCCACAATGCAACGGCAAGATGTAATGGACAGGATCATTCTGGCAGTCGGATTTTTCTTTTTCTCTCTTGCTGTTCTTTATGTCGTCTCCAAACGTATTGGGCTACTGAAGTTGCAGAGGATGGCCACTGCTGCCATCAAAGCTGGGATGGTCAAGCAAGCAAACCAAATTCCTAGAGATGGTGGTAGGAATCCAGTTCAAGCCAACGAGGATTTAATTCACAGAGTTGCAGAGCCACAGGAACGACGTGTTTGGGATGAACTTTGA

Homology

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BLAST of CmoCh08G001420 vs. TrEMBL
Match: E5GCN4_CUCME (Vesicle transport protein SEC20 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.2e-132
Identity = 267/293 (91.13%), Postives = 276/293 (94.20%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFH TL+RIKAIESY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHHTLERIKAIESYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSE+EAAQSLLESWKNQS NLRSSLRNANMQAKANMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEIEAAQSLLESWKNQSQNLRSSLRNANMQAKANMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240

Query: 241 RMATAAIKAGMVKQANQIPRD---GGRNPVQA-NEDLIHRVAEPQERRVWDEL 290
           RMATAAIKAGM KQANQIP D    GRNPVQA  EDL+HR+ + QERR+WDEL
Sbjct: 241 RMATAAIKAGMAKQANQIPGDVINHGRNPVQAKEEDLVHRIEDLQERRIWDEL 293

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BLAST of CmoCh08G001420 vs. TrEMBL
Match: A0A0A0KCG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104070 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 8.6e-110
Identity = 223/237 (94.09%), Postives = 230/237 (97.05%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL 238
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL 237

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BLAST of CmoCh08G001420 vs. TrEMBL
Match: W9S5Y3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009713 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.2e-96
Identity = 205/295 (69.49%), Postives = 242/295 (82.03%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTN----SLPRLNALAQDGLN 60
           MD+V E+V++ K EW++A+ + +++IKAIE+Y K S +        SLPR+N +AQD L 
Sbjct: 1   MDEVEEQVEKAKKEWDEAYVKLVEQIKAIEAYGKSSSTESEGKSKYSLPRMNGVAQDCLA 60

Query: 61  LLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQE 120
           LL+SL+FKLDLLAPQL SD +V++A+SLLESW N+S +LRSSLRNAN+QAKANMRKAAQE
Sbjct: 61  LLNSLQFKLDLLAPQLPSDDKVQSAKSLLESWTNRSQSLRSSLRNANLQAKANMRKAAQE 120

Query: 121 EREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEES 180
           ERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTAS + T EES
Sbjct: 121 ERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASVLMTNEES 180

Query: 181 TGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGL 240
           TGVL+KAESEY+GHRSLL RTRNLLSTMQRQDV+DR+ILAVGFF FS AVLYVVSKRIGL
Sbjct: 181 TGVLRKAESEYRGHRSLLMRTRNLLSTMQRQDVLDRVILAVGFFLFSCAVLYVVSKRIGL 240

Query: 241 LKLQRMATAAIKAGMVKQANQIPRD--GGRNPVQANEDLIHRVAEPQERRVWDEL 290
           LKLQR  TAA+KAGMV+Q    P       N  Q  ++ ++R+  P ER + DEL
Sbjct: 241 LKLQRAVTAAVKAGMVRQVEHGPGAVIDAANQAQVQDNAVNRLEVPLERVMRDEL 295

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BLAST of CmoCh08G001420 vs. TrEMBL
Match: G7IFT9_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g028660 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 5.4e-96
Identity = 205/292 (70.21%), Postives = 231/292 (79.11%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDT-NSLPRLNALAQDGLNLLS 60
           MDKV EEV+RVK EWN+   +T D I AI  Y K   S D  NSL RLN +AQDGL LLS
Sbjct: 1   MDKVVEEVERVKKEWNETCIKTQDHINAIGEYGKSGRSKDEKNSLARLNGIAQDGLALLS 60

Query: 61  SLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEERE 120
           SL F LDLLAPQL +  EV++A+ LL+SWK  + NLR SLRNAN+QAKAN+RKAAQEERE
Sbjct: 61  SLHFNLDLLAPQLPTQQEVDSARQLLQSWKTLTQNLRISLRNANLQAKANLRKAAQEERE 120

Query: 121 QLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGV 180
            LLGGGEEST+RRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER  ST+ T +ESTGV
Sbjct: 121 LLLGGGEESTVRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERNTSTLMTLDESTGV 180

Query: 181 LKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKL 240
           LKKAESEYKGHRSLLTRTRNLLSTMQRQD++DR+IL VGF  FSLAVLYVVSKRIG+L L
Sbjct: 181 LKKAESEYKGHRSLLTRTRNLLSTMQRQDIIDRVILGVGFLLFSLAVLYVVSKRIGILTL 240

Query: 241 QRMATAAIKAGMVKQANQIPR--DGGRNPVQANEDLIHRVAEPQERRVWDEL 290
           QR  T AIKAGM+ QA   P+      NP QA  D +H +  P E+++ DEL
Sbjct: 241 QRKVTGAIKAGMMGQAGLRPQAVAENMNPHQARVDRVHNIEAPLEQQIHDEL 292

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BLAST of CmoCh08G001420 vs. TrEMBL
Match: A0A067KNF5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 209/301 (69.44%), Postives = 236/301 (78.41%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQ------SGSTDT----NSLPRLNAL 60
           MDKV EEV++VK EW++A+ +T   IKAIE Y K        G  D     NSLPRLN L
Sbjct: 1   MDKVVEEVEKVKKEWDEAYAKTQGHIKAIEEYGKSRRGGGGEGEVDATKEKNSLPRLNGL 60

Query: 61  AQDGLNLLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANM 120
           AQDGL LL SL+FKLDLLAPQL ++  V++AQ LLESWK Q  N+R SLRNAN+QAKANM
Sbjct: 61  AQDGLALLQSLQFKLDLLAPQLPTEENVKSAQVLLESWKKQCQNVRVSLRNANLQAKANM 120

Query: 121 RKAAQEEREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTI 180
           RKAAQEERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER+AST+
Sbjct: 121 RKAAQEERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSASTL 180

Query: 181 ETFEESTGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVV 240
            TFEESTGVL+KAE+EYKGHRSLL RTRNLLSTMQRQDV+DR+ILA+GF  FS AVLYVV
Sbjct: 181 MTFEESTGVLRKAETEYKGHRSLLMRTRNLLSTMQRQDVIDRVILAIGFILFSCAVLYVV 240

Query: 241 SKRIGLLKLQRMATAAIKAGMVKQANQIPR--DGGRNPVQANEDLIHRVAEPQERRVWDE 290
           SKRIGLLKLQR  TAAIKAGM +Q +   R  + G    Q  +D + +V  P    + DE
Sbjct: 241 SKRIGLLKLQRTVTAAIKAGMAQQGDIRRRGVENGPGFAQVYQDAVPKVEAPLGEPMHDE 300

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BLAST of CmoCh08G001420 vs. TAIR10
Match: AT3G24315.1 (AT3G24315.1 Sec20 family protein)

HSP 1 Score: 317.8 bits (813), Expect = 7.0e-87
Identity = 186/293 (63.48%), Postives = 226/293 (77.13%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQ---SGSTDTNSLPRLNALAQDGLNL 60
           MD+V  EV++ K EW +A+ +T+  I +I+ Y K     G  +  SL RLN LAQDGL+L
Sbjct: 1   MDEVVVEVEKTKREWEEAYEKTIGHIISIQQYGKSRRGDGGEEKFSLQRLNGLAQDGLSL 60

Query: 61  LSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEE 120
           L+SL+F LDLLAPQL SD +V++ QSLLE+WKNQ H+LR +LR+AN+QAK NMRKAAQEE
Sbjct: 61  LNSLQFNLDLLAPQLPSDDQVQSTQSLLETWKNQYHSLRVNLRSANLQAKDNMRKAAQEE 120

Query: 121 REQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEEST 180
           RE LLGGG EST+ RR  Q  AG+TS AESITESLRR+RQLMVQEVER+ +T+  F+EST
Sbjct: 121 RELLLGGGTESTVLRRKRQANAGVTSDAESITESLRRSRQLMVQEVERSTNTLVAFDEST 180

Query: 181 GVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL 240
           GVLKKAESEYKGHRSLL+RTRNLLSTMQRQDV+DRIIL VGF  F  AV+YVVSKRIG+L
Sbjct: 181 GVLKKAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGIL 240

Query: 241 KLQRMATAAIKAGMV-KQANQIPRDGGRNPVQANEDLIHRVAEPQERRVWDEL 290
           KLQRMATAAIKA +  K AN +  D      Q + + +  V  P ++R+ DEL
Sbjct: 241 KLQRMATAAIKAQLAGKAANGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293

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BLAST of CmoCh08G001420 vs. NCBI nr
Match: gi|778712038|ref|XP_011656838.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212139 [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 1.2e-133
Identity = 265/292 (90.75%), Postives = 276/292 (94.52%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL LQ
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLXLQ 240

Query: 241 RMATAAIKAGMVKQANQIPRD---GGRNPVQANEDLIHRVAEPQERRVWDEL 290
           RMATAAIKAGM KQANQIP D    GRNPVQA EDL+HR+ +PQERR+WDEL
Sbjct: 241 RMATAAIKAGMAKQANQIPGDVINHGRNPVQAKEDLVHRIEDPQERRIWDEL 292

[Close]

BLAST of CmoCh08G001420 vs. NCBI nr
Match: gi|659119656|ref|XP_008459773.1| (PREDICTED: vesicle transport protein SEC20 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.8e-132
Identity = 267/293 (91.13%), Postives = 276/293 (94.20%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFH TL+RIKAIESY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHHTLERIKAIESYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSE+EAAQSLLESWKNQS NLRSSLRNANMQAKANMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEIEAAQSLLESWKNQSQNLRSSLRNANMQAKANMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240

Query: 241 RMATAAIKAGMVKQANQIPRD---GGRNPVQA-NEDLIHRVAEPQERRVWDEL 290
           RMATAAIKAGM KQANQIP D    GRNPVQA  EDL+HR+ + QERR+WDEL
Sbjct: 241 RMATAAIKAGMAKQANQIPGDVINHGRNPVQAKEEDLVHRIEDLQERRIWDEL 293

[Close]

BLAST of CmoCh08G001420 vs. NCBI nr
Match: gi|700191295|gb|KGN46499.1| (hypothetical protein Csa_6G104070 [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 1.2e-109
Identity = 223/237 (94.09%), Postives = 230/237 (97.05%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKVAEEV+RVKNEWN+AFHQT++RIKAI+SY KQS S   NSLPRLNALAQDGLNLLSS
Sbjct: 1   MDKVAEEVNRVKNEWNEAFHQTIERIKAIDSYDKQSESMGKNSLPRLNALAQDGLNLLSS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQS NLRSSLRNANMQAK NMRKAAQEERE+
Sbjct: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSQNLRSSLRNANMQAKTNMRKAAQEERER 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETF+ESTGVL
Sbjct: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL 238
           KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL
Sbjct: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLL 237

[Close]

BLAST of CmoCh08G001420 vs. NCBI nr
Match: gi|1009158168|ref|XP_015897146.1| (PREDICTED: uncharacterized protein LOC107430797 [Ziziphus jujuba])

HSP 1 Score: 374.4 bits (960), Expect = 1.8e-100
Identity = 210/291 (72.16%), Postives = 244/291 (83.85%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGSTDTNSLPRLNALAQDGLNLLSS 60
           MDKV EEV++ K EW++ + + +++IKAIE Y K  G    +SLPR+N LAQDGL LL+S
Sbjct: 1   MDKVVEEVEKAKKEWDETYSKVVEQIKAIEGYAKSVGVEKKDSLPRMNGLAQDGLALLNS 60

Query: 61  LEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQEEREQ 120
           L+FKLDLLAPQL +D + ++A+SLLESWKNQS +LR SLRNAN+QAKANMRKAAQEERE 
Sbjct: 61  LQFKLDLLAPQLPTDEQAKSAKSLLESWKNQSQSLRLSLRNANLQAKANMRKAAQEEREL 120

Query: 121 LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEESTGVL 180
           LLGGG ESTIRRRNLQTKAGMTSAAE ITESLRRTRQLMVQEVER+AST+ TF+ESTGVL
Sbjct: 121 LLGGGGESTIRRRNLQTKAGMTSAAEGITESLRRTRQLMVQEVERSASTLMTFDESTGVL 180

Query: 181 KKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGLLKLQ 240
           KKAESEYKGHRSLL RTRNLLSTMQRQDVMDRIILAVGFF F+ AVLYVVSKRIG+L+LQ
Sbjct: 181 KKAESEYKGHRSLLMRTRNLLSTMQRQDVMDRIILAVGFFLFACAVLYVVSKRIGILRLQ 240

Query: 241 RMATAAIKAGMVKQAN--QIPRDGGRNPVQANEDLIHRVAEPQERRVWDEL 290
           R  TAA KAG V+QA+  + P + G NP Q  E+ +H+V  P ER + DEL
Sbjct: 241 RTVTAAFKAG-VRQADFGRRPVENGVNPAQILENAVHKVEVPLERAMHDEL 290

[Close]

BLAST of CmoCh08G001420 vs. NCBI nr
Match: gi|657966283|ref|XP_008374827.1| (PREDICTED: vesicle transport protein SEC20 [Malus domestica])

HSP 1 Score: 369.0 bits (946), Expect = 7.5e-99
Identity = 208/295 (70.51%), Postives = 245/295 (83.05%), Query Frame = 1


Query: 1   MDKVAEEVDRVKNEWNDAFHQTLDRIKAIESYKKQSGS----TDTNSLPRLNALAQDGLN 60
           MDKV EEV++ K EW++A+   + +IKAIE Y + +G+    +  +SLPR+N LAQDGL+
Sbjct: 1   MDKVEEEVEKAKKEWDEAYSNVVQQIKAIEEYGESTGAATMVSQKDSLPRMNGLAQDGLS 60

Query: 61  LLSSLEFKLDLLAPQLLSDSEVEAAQSLLESWKNQSHNLRSSLRNANMQAKANMRKAAQE 120
           LL+SL+FKLDL APQL +D +V++A++LLESWKN+SH+LR SLRNAN+QAKANMRKAAQ+
Sbjct: 61  LLNSLQFKLDLFAPQLPTDDQVQSAKALLESWKNRSHSLRLSLRNANLQAKANMRKAAQK 120

Query: 121 EREQLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERTASTIETFEES 180
           ERE LLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVER+A T+ TFEES
Sbjct: 121 ERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSAGTLMTFEES 180

Query: 181 TGVLKKAESEYKGHRSLLTRTRNLLSTMQRQDVMDRIILAVGFFFFSLAVLYVVSKRIGL 240
           TGVLKKAESEYKGHRSLL RTRNLLSTMQRQDV+DR+IL +GFF FSLAVLYVVSKRIGL
Sbjct: 181 TGVLKKAESEYKGHRSLLMRTRNLLSTMQRQDVIDRLILVLGFFLFSLAVLYVVSKRIGL 240

Query: 241 LKLQRMATAAIKAGMVKQANQIPR--DGGRNPVQANEDLIHRVAEPQERRVWDEL 290
           L LQR  T+AIKAGMV +A   P   +   N  QA  +  H+V EP ER + DEL
Sbjct: 241 LALQRQVTSAIKAGMVGRAELRPGAVEDAVNHAQAYGNAAHKVEEPLERVMHDEL 295

The following BLAST results are available for this feature:

BLAST of CmoCh08G001420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G001420 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCN4_CUCME	1.2e-132	91.13	Vesicle transport protein SEC20 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KCG9_CUCSA	8.6e-110	94.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104070 PE=4 SV=1	[more]
W9S5Y3_9ROSA	3.2e-96	69.49	Uncharacterized protein OS=Morus notabilis GN=L484_009713 PE=4 SV=1	[more]
G7IFT9_MEDTR	5.4e-96	70.21	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g028660 PE=4 SV=1	[more]
A0A067KNF5_JATCU	2.1e-95	69.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1	[more]

BLAST of CmoCh08G001420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24315.1	7.0e-87	63.48	Sec20 family protein	[more]

BLAST of CmoCh08G001420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712038\|ref\|XP_011656838.1\|	1.2e-133	90.75	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212139 [Cucumis sa...	[more]
gi\|659119656\|ref\|XP_008459773.1\|	1.8e-132	91.13	PREDICTED: vesicle transport protein SEC20 [Cucumis melo]	[more]
gi\|700191295\|gb\|KGN46499.1\|	1.2e-109	94.09	hypothetical protein Csa_6G104070 [Cucumis sativus]	[more]
gi\|1009158168\|ref\|XP_015897146.1\|	1.8e-100	72.16	PREDICTED: uncharacterized protein LOC107430797 [Ziziphus jujuba]	[more]
gi\|657966283\|ref\|XP_008374827.1\|	7.5e-99	70.51	PREDICTED: vesicle transport protein SEC20 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005606	Sec20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G001420.1	CmoCh08G001420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005606	Sec20	PFAM	PF03908	Sec20	coord: 143..234 score: 2.5
None	No IPR available	unknown	Coil	Coil	coord: 85..119 scor
None	No IPR available	PANTHER	PTHR12825	BNIP1-RELATED	coord: 1..252 score: 3.4
None	No IPR available	PANTHER	PTHR12825:SF0	VESICLE TRANSPORT PROTEIN SEC20	coord: 1..252 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G001420	Cucsa.121180	Cucumber (Gy14) v1	cgycmoB0311
CmoCh08G001420	CmaCh08G001410	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G001420	Cla006710	Watermelon (97103) v1	cmowmB864
CmoCh08G001420	Csa6G104070	Cucumber (Chinese Long) v2	cmocuB882
CmoCh08G001420	MELO3C022272	Melon (DHL92) v3.5.1	cmomeB803
CmoCh08G001420	ClCG06G002570	Watermelon (Charleston Gray)	cmowcgB802
CmoCh08G001420	CSPI06G08180	Wild cucumber (PI 183967)	cmocpiB895
CmoCh08G001420	Cp4.1LG17g10380	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G001420	MELO3C022272.2	Melon (DHL92) v3.6.1	cmomedB906
CmoCh08G001420	CsaV3_6G008560	Cucumber (Chinese Long) v3	cmocucB1049
CmoCh08G001420	Cla97C06G111940	Watermelon (97103) v2	cmowmbB899
CmoCh08G001420	Bhi12G001972	Wax gourd	cmowgoB1088
CmoCh08G001420	CsGy6G008250	Cucumber (Gy14) v2	cgybcmoB848
CmoCh08G001420	Carg04968	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G001420	Wax gourd	cmowgoB1098
CmoCh08G001420	Cucurbita moschata (Rifu)	cmocmoB313
CmoCh08G001420	Cucurbita moschata (Rifu)	cmocmoB323
CmoCh08G001420	Cucurbita maxima (Rimu)	cmacmoB368
CmoCh08G001420	Cucurbita maxima (Rimu)	cmacmoB378
CmoCh08G001420	Wild cucumber (PI 183967)	cmocpiB911
CmoCh08G001420	Cucumber (Chinese Long) v2	cmocuB897
CmoCh08G001420	Cucurbita pepo (Zucchini)	cmocpeB836
CmoCh08G001420	Cucurbita pepo (Zucchini)	cmocpeB842
CmoCh08G001420	Bottle gourd (USVL1VR-Ls)	cmolsiB800
CmoCh08G001420	Cucumber (Gy14) v2	cgybcmoB430
CmoCh08G001420	Silver-seed gourd	carcmoB0189
CmoCh08G001420	Cucumber (Chinese Long) v3	cmocucB1043
CmoCh08G001420	Cucumber (Chinese Long) v3	cmocucB1065