Cp4.1LG17g03000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g03000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNA-directed RNA polymerase subunit beta
Location	Cp4.1LG17 : 1786980 .. 1788278 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCCCCGAAGCGAAAGAAATGGACTGAAGCTGAGGAGAGGACTTTGATCGATAAGTATGGAGAAATGGTCTCTGATGGAACCCTAGCTAAGATGAAAACCCGTGAGAAAAAGTTTAGGCCAATTGCTAGTTTTGTGAATTCTATGCATCATGTTCAAGATCCTGTAGCGTATCCATGGCAATGGACGTGGAAAGATGTTTCTACTAAGGTCCAGAACATGAGGCACCAATATCTGCTTGTGAAGCAGAAGATTAAGAAACCTGAATCTGGAGTCGAAAACTCGGGTGGAGAGTTGAAGGCAGAGTATGATTGGATGGAGGGTGTTACTTATTGGTCGAACTTTTTGAGATATAAGGATGTTTTTGGGGATGTAGCGGCTGCAAATAGCCATTATAATGATTTAGCTGTCGTTTCGAGTAGCGATCGGGGGAACGTAGACCGGTTTTTGGAGGTGAGTAGAGAGATGGATATGTTGGATTTTGCTCAAATTGATGGTGTTGACAATGGGGTGATGAATTTGGGATTTGAGTTTAATGGGGATGAAGCAGAAGAAAACTTTAATGATAATGATAATGATAATGATAATGATCAGTTGAAGGAGGATGGAGAGAACAGTTTTTTCTGTGAAGGAGTTGATCCCAAGAAGAACAACTTTAAGAAGAAGAGAAAGGTGATGAAGAGATTGGAGAAGAAAGCGTGGGGATTTCTCGTGAACCAGCTAGGACGGTTGAAGGATATGGAGGCTCAGTTTGAGAAACGCGAGGTCGAAAGAGACCAAGAACGTCAGAGGTGTGAGTGTTTAAGATTTGAAATGGAAAAGAAGTGGGAACAGAAATGGGACGAAAGTGAAACGCAACGGGTCGAGAGGGAGAAAGCTCGTGATAAGTTGAGGAAGCAGAGAGTTCAAGAATGGGAAGCAATGGAGAAGGAAAGATTGGAGATGGAAAGAAGAAGAGAGGAGAAATTGAATCATGAAAGAGAATGGGAGGAGAGGATCAGCAAGAGACGTATAGAACGGAAGAATAGGATCGACGACATGTTGAACCAACACCGAGCTGAAATGAATCAAATTCAGACTCGTATTCTCCACGAGCAGCAAAACTTTACGAGTCAATTACTCGGTATTATCTCTCAATGGACTGCTCACCCTTCTACACTCTCTGATCACACTAGTGCTAGTAACCATTATCTTTCACAAATGATGCAAAATCTGCATCATGTAAACGGTATCGTTCACGATGGCACGAGAGTTGAGGCCGACAACCAAGACGATCAATTTATCGTCGATGGTTGA

mRNA sequence

ATGATTCCCCCGAAGCGAAAGAAATGGACTGAAGCTGAGGAGAGGACTTTGATCGATAAGTATGGAGAAATGGTCTCTGATGGAACCCTAGCTAAGATGAAAACCCGTGAGAAAAAGTTTAGGCCAATTGCTAGTTTTGTGAATTCTATGCATCATGTTCAAGATCCTGTAGCGTATCCATGGCAATGGACGTGGAAAGATGTTTCTACTAAGGTCCAGAACATGAGGCACCAATATCTGCTTGTGAAGCAGAAGATTAAGAAACCTGAATCTGGAGTCGAAAACTCGGGTGGAGAGTTGAAGGCAGAGTATGATTGGATGGAGGGTGTTACTTATTGGTCGAACTTTTTGAGATATAAGGATGTTTTTGGGGATGTAGCGGCTGCAAATAGCCATTATAATGATTTAGCTGTCGTTTCGAGTAGCGATCGGGGGAACGTAGACCGGTTTTTGGAGGTGAGTAGAGAGATGGATATGTTGGATTTTGCTCAAATTGATGGTGTTGACAATGGGGTGATGAATTTGGGATTTGAGTTTAATGGGGATGAAGCAGAAGAAAACTTTAATGATAATGATAATGATAATGATAATGATCAGTTGAAGGAGGATGGAGAGAACAGTTTTTTCTGTGAAGGAGTTGATCCCAAGAAGAACAACTTTAAGAAGAAGAGAAAGGTGATGAAGAGATTGGAGAAGAAAGCGTGGGGATTTCTCGTGAACCAGCTAGGACGGTTGAAGGATATGGAGGCTCAGTTTGAGAAACGCGAGGTCGAAAGAGACCAAGAACGTCAGAGGTGTGAGTGTTTAAGATTTGAAATGGAAAAGAAGTGGGAACAGAAATGGGACGAAAGTGAAACGCAACGGGTCGAGAGGGAGAAAGCTCGTGATAAGTTGAGGAAGCAGAGAGTTCAAGAATGGGAAGCAATGGAGAAGGAAAGATTGGAGATGGAAAGAAGAAGAGAGGAGAAATTGAATCATGAAAGAGAATGGGAGGAGAGGATCAGCAAGAGACGTATAGAACGGAAGAATAGGATCGACGACATGTTGAACCAACACCGAGCTGAAATGAATCAAATTCAGACTCGTATTCTCCACGAGCAGCAAAACTTTACGAGTCAATTACTCGGTATTATCTCTCAATGGACTGCTCACCCTTCTACACTCTCTGATCACACTAGTGCTAGTAACCATTATCTTTCACAAATGATGCAAAATCTGCATCATGTAAACGGTATCGTTCACGATGGCACGAGAGTTGAGGCCGACAACCAAGACGATCAATTTATCGTCGATGGTTGA

Coding sequence (CDS)

ATGATTCCCCCGAAGCGAAAGAAATGGACTGAAGCTGAGGAGAGGACTTTGATCGATAAGTATGGAGAAATGGTCTCTGATGGAACCCTAGCTAAGATGAAAACCCGTGAGAAAAAGTTTAGGCCAATTGCTAGTTTTGTGAATTCTATGCATCATGTTCAAGATCCTGTAGCGTATCCATGGCAATGGACGTGGAAAGATGTTTCTACTAAGGTCCAGAACATGAGGCACCAATATCTGCTTGTGAAGCAGAAGATTAAGAAACCTGAATCTGGAGTCGAAAACTCGGGTGGAGAGTTGAAGGCAGAGTATGATTGGATGGAGGGTGTTACTTATTGGTCGAACTTTTTGAGATATAAGGATGTTTTTGGGGATGTAGCGGCTGCAAATAGCCATTATAATGATTTAGCTGTCGTTTCGAGTAGCGATCGGGGGAACGTAGACCGGTTTTTGGAGGTGAGTAGAGAGATGGATATGTTGGATTTTGCTCAAATTGATGGTGTTGACAATGGGGTGATGAATTTGGGATTTGAGTTTAATGGGGATGAAGCAGAAGAAAACTTTAATGATAATGATAATGATAATGATAATGATCAGTTGAAGGAGGATGGAGAGAACAGTTTTTTCTGTGAAGGAGTTGATCCCAAGAAGAACAACTTTAAGAAGAAGAGAAAGGTGATGAAGAGATTGGAGAAGAAAGCGTGGGGATTTCTCGTGAACCAGCTAGGACGGTTGAAGGATATGGAGGCTCAGTTTGAGAAACGCGAGGTCGAAAGAGACCAAGAACGTCAGAGGTGTGAGTGTTTAAGATTTGAAATGGAAAAGAAGTGGGAACAGAAATGGGACGAAAGTGAAACGCAACGGGTCGAGAGGGAGAAAGCTCGTGATAAGTTGAGGAAGCAGAGAGTTCAAGAATGGGAAGCAATGGAGAAGGAAAGATTGGAGATGGAAAGAAGAAGAGAGGAGAAATTGAATCATGAAAGAGAATGGGAGGAGAGGATCAGCAAGAGACGTATAGAACGGAAGAATAGGATCGACGACATGTTGAACCAACACCGAGCTGAAATGAATCAAATTCAGACTCGTATTCTCCACGAGCAGCAAAACTTTACGAGTCAATTACTCGGTATTATCTCTCAATGGACTGCTCACCCTTCTACACTCTCTGATCACACTAGTGCTAGTAACCATTATCTTTCACAAATGATGCAAAATCTGCATCATGTAAACGGTATCGTTCACGATGGCACGAGAGTTGAGGCCGACAACCAAGACGATCAATTTATCGTCGATGGTTGA

Protein sequence

MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYPWQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGELKAEYDWMEGVTYWSNFLRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQIDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKKRKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKWDESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRREEKLNHEREWEERISKRRIERKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLSQMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG

Homology

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BLAST of Cp4.1LG17g03000 vs. TrEMBL
Match: A0A0A0LK54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G121990 PE=4 SV=1)

HSP 1 Score: 743.4 bits (1918), Expect = 1.5e-211
Identity = 384/444 (86.49%), Postives = 406/444 (91.44%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           MIPPKRKKWTEAEERTLIDKYGEM+SDGTLAKMKTREKKFRPIA++VNS+HHVQD +AYP
Sbjct: 1   MIPPKRKKWTEAEERTLIDKYGEMLSDGTLAKMKTREKKFRPIANYVNSVHHVQDSLAYP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGELKAEYDWMEGVTYWSNFLRYK 120
           WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGG+ K +YDWMEGVTYWSNFLRYK
Sbjct: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGDSKEDYDWMEGVTYWSNFLRYK 120

Query: 121 DVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ------------IDGV 180
           DVFGDVAAANS YNDL VVSSSDRGNVD+FLEVSREMDMLDFA             IDGV
Sbjct: 121 DVFGDVAAANSSYNDLTVVSSSDRGNVDQFLEVSREMDMLDFAHMGHSGAGNFTAGIDGV 180

Query: 181 DNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKKRKVMK 240
           DN VM LGFEF+GDEAEENF      NDNDQLKEDG+NSFFCE VDPKKNNFKKKRKVMK
Sbjct: 181 DNEVMGLGFEFDGDEAEENF------NDNDQLKEDGDNSFFCEEVDPKKNNFKKKRKVMK 240

Query: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKWDESETQR 300
           RLEKKAWGFLVNQLGRLKDMEAQFEKREV+R+QER+R ECLR+EMEKKWEQKW+E E QR
Sbjct: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVDREQERRRWECLRYEMEKKWEQKWEEGEAQR 300

Query: 301 VEREKARDKLRKQRVQEWEAMEKERLEMERRREEKLNHEREWEERISKRRIERKNRIDDM 360
            EREKARDKLRKQR+QEWEAMEK R+EMERRREEKLNHEREWEERISKRR+E KNRID+M
Sbjct: 301 AEREKARDKLRKQRIQEWEAMEKLRMEMERRREEKLNHEREWEERISKRRLEWKNRIDNM 360

Query: 361 LNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLSQMMQNLHH 420
           LNQHR EMNQIQTRILHEQQN T QLLGI+SQWTAH S LSDHTSASNHY+SQMMQNLHH
Sbjct: 361 LNQHRVEMNQIQTRILHEQQNLTGQLLGIVSQWTAHTSALSDHTSASNHYISQMMQNLHH 420

Query: 421 VNGIVHDGTRVEADNQDDQFIVDG 433
           VNGIVH+GTRVEADNQDDQFIVDG
Sbjct: 421 VNGIVHNGTRVEADNQDDQFIVDG 438

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BLAST of Cp4.1LG17g03000 vs. TrEMBL
Match: W9QRJ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002832 PE=4 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 4.1e-148
Identity = 290/453 (64.02%), Postives = 355/453 (78.37%), Query Frame = 1


Query: 2   IPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYPW 61
           +P +RKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKF+PIAS+VNS+HHVQDP+AYPW
Sbjct: 1   MPGRRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFKPIASYVNSVHHVQDPIAYPW 60

Query: 62  QWTWKDVSTKVQNMRHQYLLVKQKIKKP--ESGVENSGGELKA---EYDWMEGVTYWSNF 121
           QW+WKDVSTKVQNMRHQYLLVKQKIKK   ES  E  GG  +    E+DW+EG+T+WSNF
Sbjct: 61  QWSWKDVSTKVQNMRHQYLLVKQKIKKQPQESNSEAGGGGGECSGEEFDWVEGLTHWSNF 120

Query: 122 LRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSR-EMDMLDFAQ----------- 181
           LRYK+VFGD     S+ ND+  V++ D G+   F+      M++++F Q           
Sbjct: 121 LRYKEVFGDFGLVASNGNDIMAVANGDDGDGGGFIGGGGIGMEIVEFGQMGHSGDADFGA 180

Query: 182 -IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNF--- 241
            IDGVDNGVM LGFE++G+EAEEN+N N       +++EDG++ F  E V+   +N    
Sbjct: 181 GIDGVDNGVMGLGFEYDGEEAEENYNGNG------RVREDGDDGFVYEEVETNGSNLNRK 240

Query: 242 KKKRKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQK 301
           KK++KV+K L KKAWGFL +QL  L++ EA+FE+REVER++ERQR E LR E E++WE++
Sbjct: 241 KKRKKVLKGLGKKAWGFLGSQLRNLRETEARFEQREVERERERQRRESLRMECEREWERR 300

Query: 302 WDESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR-EEKLNHEREWEERISKRRI 361
           W+E E + +EREK RD LR QR+QEWEA+EKE  E+ERRR EE+L HEREWEER  +RR+
Sbjct: 301 WEEWEKESLEREKTRDNLRMQRIQEWEALEKESEELERRRREEELLHEREWEERTHRRRL 360

Query: 362 ERKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYL 421
           E K RID+ML+QHRAEM Q+QTRILHEQQN T+QLLGI+SQWT HP+ LSDHTSASNHYL
Sbjct: 361 ESKKRIDEMLSQHRAEMGQMQTRILHEQQNLTNQLLGIMSQWTTHPAALSDHTSASNHYL 420

Query: 422 SQMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           SQMMQNLHHVN +VHD  RVE +NQDDQFIVDG
Sbjct: 421 SQMMQNLHHVNSLVHDDARVEGENQDDQFIVDG 447

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BLAST of Cp4.1LG17g03000 vs. TrEMBL
Match: M5XBM5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005743mg PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 2.5e-145
Identity = 285/452 (63.05%), Postives = 345/452 (76.33%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           M+P +RKKWTEAEERTLIDKY EMVSDG LAKMKTREKKF+PIA +VNS+HHVQDP+AY 
Sbjct: 1   MMPSRRKKWTEAEERTLIDKYREMVSDGMLAKMKTREKKFKPIACYVNSVHHVQDPIAYR 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKK--PESGVENSGGELKA---EYDWMEGVTYWSN 120
           WQW+WKDVSTKVQNMRHQYLLVKQKIKK  P+ G  + GG  +    E+DWMEG+T+WSN
Sbjct: 61  WQWSWKDVSTKVQNMRHQYLLVKQKIKKQQPDGGASSGGGSGECSGEEFDWMEGLTHWSN 120

Query: 121 FLRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ----------- 180
           FLRYK+VFGDV   NS+ N+L    + D  N   F+   R M ++DF Q           
Sbjct: 121 FLRYKEVFGDVGIVNSNGNELMASVNGDGENGGVFVGSGRGMGLVDFGQMGHSDGDFGAG 180

Query: 181 IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKKR 240
           IDGV+NGVM LGFE++G+E EENFN ND      +++EDG++ F CE V+    + KKK+
Sbjct: 181 IDGVENGVMGLGFEYDGEEGEENFNGND------RVREDGDDRFVCEEVEQNGRSLKKKK 240

Query: 241 KVMKR---LEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKW 300
           K  +    L KKAWG+L NQL +LK+MEA+FE+RE ER+++RQR E  R E E + E KW
Sbjct: 241 KKREASMGLGKKAWGYLGNQLSKLKEMEARFEQREAERERDRQRSESFRMECEHEREWKW 300

Query: 301 DESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR-EEKLNHEREWEERISKRRIE 360
           +E   ++ E+EK R+KL+KQR+ EWEA+EKE  E ERRR EE+L HEREWEER+ +RR E
Sbjct: 301 EEWVNKKEEKEKTREKLKKQRILEWEALEKESEERERRRKEEELIHEREWEERMDRRRSE 360

Query: 361 RKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLS 420
            K RID+ML  HRAEM Q+QTRILHEQQN TSQLLGI+SQWTAHP+ LSDHTSASNHYLS
Sbjct: 361 WKKRIDEMLGHHRAEMGQMQTRILHEQQNLTSQLLGIVSQWTAHPAGLSDHTSASNHYLS 420

Query: 421 QMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           QMMQNLHHVN +VH+  RVE +NQDDQFIVDG
Sbjct: 421 QMMQNLHHVNSLVHEDARVEGENQDDQFIVDG 446

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BLAST of Cp4.1LG17g03000 vs. TrEMBL
Match: I1K3T7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G153300 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 6.1e-144
Identity = 291/455 (63.96%), Postives = 345/455 (75.82%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           MIPP+RKKWTEAEE+TLIDKYGEMV+DG+LAKM+TREKKF+PIA  VNS+HHV+DPVAYP
Sbjct: 1   MIPPRRKKWTEAEEKTLIDKYGEMVADGSLAKMRTREKKFKPIACHVNSVHHVRDPVAYP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGELK--AEYDWMEGVTYWSNFLR 120
           WQW+WKDVSTKVQNMRHQYLLVKQKIK+PE      GG+    +E+DW+EG+T+WSNFLR
Sbjct: 61  WQWSWKDVSTKVQNMRHQYLLVKQKIKRPEFSGSGGGGDCDDGSEFDWVEGLTHWSNFLR 120

Query: 121 YKDVFGDVAAANSHY--NDLAVVSSSDRG-----NVDRFLEVSREMDMLDFAQ------- 180
           YKDVFGDVA A   +  N+L  +   D G     N D FL     MDM++F Q       
Sbjct: 121 YKDVFGDVALAVGGHGGNELMGIEDGDHGDRDGDNGDGFLAGGGGMDMVEFGQMGHSGDG 180

Query: 181 -----IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSF-FCEGVDPKKN 240
                +DGVDN VM LGFE  G+E E N+N +      D      EN F F E  +   +
Sbjct: 181 DFGAALDGVDNEVMGLGFEIEGEEGEVNYNGSGGREREDA----AENGFVFEEEGEVTGS 240

Query: 241 NFKKKRKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWE 300
           + KKKRKV K +EKKAW  L NQLG+L++ME +FE+REVER++ERQR E LR E++K+WE
Sbjct: 241 SLKKKRKVAKGMEKKAWRILANQLGQLREMETRFEQREVERERERQRRENLRVELDKQWE 300

Query: 301 QKWDESETQRVEREKARDKLRKQRVQEWEAMEKERLEMER-RREEKLNHEREWEERISKR 360
           +K +E E +R EREK RDKLR+QR+ EWEAMEKE  EMER RREE+L HEREWEER++ R
Sbjct: 301 RKLEEREKEREEREKERDKLRRQRMAEWEAMEKENEEMERKRREEELIHEREWEERMNCR 360

Query: 361 RIERKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNH 420
           R+E K R+D+ML+QHRAEM Q+QTR LHEQQN T+QLLGI SQW A PS LSDHTSASNH
Sbjct: 361 RLEWKKRVDEMLSQHRAEMGQMQTRFLHEQQNLTNQLLGIFSQWPAQPSGLSDHTSASNH 420

Query: 421 YLSQMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           YLSQMMQNLHHVNGIVH   RVE DNQ+DQFIVDG
Sbjct: 421 YLSQMMQNLHHVNGIVHGDARVEGDNQEDQFIVDG 451

[Close]

BLAST of Cp4.1LG17g03000 vs. TrEMBL
Match: V4SBC6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004964mg PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 3.4e-142
Identity = 278/450 (61.78%), Postives = 351/450 (78.00%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           M+  +RKKWTEAEE+TLI+KYGEMV+DGTLAKMKTREKK++PIA +VNSMH+V+D +A+P
Sbjct: 1   MVTSRRKKWTEAEEKTLINKYGEMVADGTLAKMKTREKKYKPIALYVNSMHYVRDSIAFP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENS-GGELKA-EYDWMEGVTYWSNFLR 120
           W W+WKDVSTKVQNMRHQYLLVKQKIKKPE  V+NS GGE    E+DW EG+T+WSNFLR
Sbjct: 61  WHWSWKDVSTKVQNMRHQYLLVKQKIKKPELSVDNSVGGECNGDEFDWAEGLTHWSNFLR 120

Query: 121 YKDVFGDVAAAN----SHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ---------- 180
           YK+VFGDV A+     S+ +DL  V + DR N   F+ V   M++ DF Q          
Sbjct: 121 YKEVFGDVPASYNSNISNGSDLMAVVNEDRENGGGFVGVGTGMEIADFGQMGHSGDGDFT 180

Query: 181 -IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKK 240
            IDG +NG+M LGF+++GDE E+NFN +     +++++EDG+N F  +  +   +N KKK
Sbjct: 181 TIDGGENGMMGLGFDYDGDEGEDNFNGH-----HERVREDGDNGFTYDEGEHNGSNLKKK 240

Query: 241 RKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKWDE 300
           RK++K LEKK  GFL NQLG+LK+MEA+FE+RE ER++ERQR E  R ++E++W++K +E
Sbjct: 241 RKLLKGLEKKTLGFLANQLGQLKEMEARFEQREAERERERQRRENFRIKLEQEWQRKLEE 300

Query: 301 SETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR-EEKLNHEREWEERISKRRIERK 360
            E +R ER+KA++ LR+QR+QEWE+MEKE  E ERRR +E+L  EREWEERI++RR E  
Sbjct: 301 REKEREERDKAKEHLRRQRIQEWESMEKESEERERRRRDEELIQEREWEERINRRRSEWN 360

Query: 361 NRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLSQM 420
            RID +L+QHR EM Q+Q RILHEQQN TSQLLGI+SQWT HP+ LSDHT AS HYLSQM
Sbjct: 361 KRIDGILSQHRTEMGQMQARILHEQQNLTSQLLGIVSQWTGHPTGLSDHTGASTHYLSQM 420

Query: 421 MQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           MQNLHHVNG+VH  TRVE DNQDDQFIVDG
Sbjct: 421 MQNLHHVNGMVHGDTRVEGDNQDDQFIVDG 445

[Close]

BLAST of Cp4.1LG17g03000 vs. NCBI nr
Match: gi|659114624|ref|XP_008457150.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Cucumis melo])

HSP 1 Score: 746.1 bits (1925), Expect = 3.4e-212
Identity = 386/444 (86.94%), Postives = 406/444 (91.44%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           MIPPKRKKWTEAEERTLIDKYGEM+SDGTLAKMKTREKKFRPIA++VNS+HHVQD +AYP
Sbjct: 1   MIPPKRKKWTEAEERTLIDKYGEMLSDGTLAKMKTREKKFRPIANYVNSVHHVQDSLAYP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGELKAEYDWMEGVTYWSNFLRYK 120
           WQW+WKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGG+ K EYDWMEGVTYWSNFLRYK
Sbjct: 61  WQWSWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGDSKEEYDWMEGVTYWSNFLRYK 120

Query: 121 DVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ------------IDGV 180
           DVFGDVAAANS YNDL VVSSSDRGNVD+FLEVSREMDMLDFA             IDGV
Sbjct: 121 DVFGDVAAANSSYNDLTVVSSSDRGNVDQFLEVSREMDMLDFAHMGHSGAGNFTAGIDGV 180

Query: 181 DNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKKRKVMK 240
           DN VM LGFEF+GDEAEENF      NDNDQLKEDGENSFFCE VDPKKNNFKKKRKVMK
Sbjct: 181 DNEVMGLGFEFDGDEAEENF------NDNDQLKEDGENSFFCEEVDPKKNNFKKKRKVMK 240

Query: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKWDESETQR 300
           RLEKKAWGFLVNQLGRLKDMEAQFEKREV+R+QER+R ECLR+EMEKKWEQKW+E E QR
Sbjct: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVDREQERRRWECLRYEMEKKWEQKWEEGEAQR 300

Query: 301 VEREKARDKLRKQRVQEWEAMEKERLEMERRREEKLNHEREWEERISKRRIERKNRIDDM 360
            EREKARDKLRKQR+QEWEAMEK R+EMERRREEKLNHEREWEERISKRR+E KNRID+M
Sbjct: 301 AEREKARDKLRKQRIQEWEAMEKLRMEMERRREEKLNHEREWEERISKRRLEWKNRIDNM 360

Query: 361 LNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLSQMMQNLHH 420
           LNQHR EMNQIQTRILHEQQN T QLLGI+SQWTAH S LSDHTSASNHY+SQMMQNLHH
Sbjct: 361 LNQHRVEMNQIQTRILHEQQNLTGQLLGIVSQWTAHTSALSDHTSASNHYISQMMQNLHH 420

Query: 421 VNGIVHDGTRVEADNQDDQFIVDG 433
           VNGIVHDGTRVEADNQDDQFIVDG
Sbjct: 421 VNGIVHDGTRVEADNQDDQFIVDG 438

[Close]

BLAST of Cp4.1LG17g03000 vs. NCBI nr
Match: gi|778668299|ref|XP_011649075.1| (PREDICTED: uncharacterized protein LOC105434578 [Cucumis sativus])

HSP 1 Score: 743.4 bits (1918), Expect = 2.2e-211
Identity = 384/444 (86.49%), Postives = 406/444 (91.44%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           MIPPKRKKWTEAEERTLIDKYGEM+SDGTLAKMKTREKKFRPIA++VNS+HHVQD +AYP
Sbjct: 1   MIPPKRKKWTEAEERTLIDKYGEMLSDGTLAKMKTREKKFRPIANYVNSVHHVQDSLAYP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGELKAEYDWMEGVTYWSNFLRYK 120
           WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGG+ K +YDWMEGVTYWSNFLRYK
Sbjct: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGDSKEDYDWMEGVTYWSNFLRYK 120

Query: 121 DVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ------------IDGV 180
           DVFGDVAAANS YNDL VVSSSDRGNVD+FLEVSREMDMLDFA             IDGV
Sbjct: 121 DVFGDVAAANSSYNDLTVVSSSDRGNVDQFLEVSREMDMLDFAHMGHSGAGNFTAGIDGV 180

Query: 181 DNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNFKKKRKVMK 240
           DN VM LGFEF+GDEAEENF      NDNDQLKEDG+NSFFCE VDPKKNNFKKKRKVMK
Sbjct: 181 DNEVMGLGFEFDGDEAEENF------NDNDQLKEDGDNSFFCEEVDPKKNNFKKKRKVMK 240

Query: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKWDESETQR 300
           RLEKKAWGFLVNQLGRLKDMEAQFEKREV+R+QER+R ECLR+EMEKKWEQKW+E E QR
Sbjct: 241 RLEKKAWGFLVNQLGRLKDMEAQFEKREVDREQERRRWECLRYEMEKKWEQKWEEGEAQR 300

Query: 301 VEREKARDKLRKQRVQEWEAMEKERLEMERRREEKLNHEREWEERISKRRIERKNRIDDM 360
            EREKARDKLRKQR+QEWEAMEK R+EMERRREEKLNHEREWEERISKRR+E KNRID+M
Sbjct: 301 AEREKARDKLRKQRIQEWEAMEKLRMEMERRREEKLNHEREWEERISKRRLEWKNRIDNM 360

Query: 361 LNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLSQMMQNLHH 420
           LNQHR EMNQIQTRILHEQQN T QLLGI+SQWTAH S LSDHTSASNHY+SQMMQNLHH
Sbjct: 361 LNQHRVEMNQIQTRILHEQQNLTGQLLGIVSQWTAHTSALSDHTSASNHYISQMMQNLHH 420

Query: 421 VNGIVHDGTRVEADNQDDQFIVDG 433
           VNGIVH+GTRVEADNQDDQFIVDG
Sbjct: 421 VNGIVHNGTRVEADNQDDQFIVDG 438

[Close]

BLAST of Cp4.1LG17g03000 vs. NCBI nr
Match: gi|703084784|ref|XP_010092564.1| (hypothetical protein L484_002832 [Morus notabilis])

HSP 1 Score: 532.7 bits (1371), Expect = 5.9e-148
Identity = 290/453 (64.02%), Postives = 355/453 (78.37%), Query Frame = 1


Query: 2   IPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYPW 61
           +P +RKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKF+PIAS+VNS+HHVQDP+AYPW
Sbjct: 1   MPGRRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFKPIASYVNSVHHVQDPIAYPW 60

Query: 62  QWTWKDVSTKVQNMRHQYLLVKQKIKKP--ESGVENSGGELKA---EYDWMEGVTYWSNF 121
           QW+WKDVSTKVQNMRHQYLLVKQKIKK   ES  E  GG  +    E+DW+EG+T+WSNF
Sbjct: 61  QWSWKDVSTKVQNMRHQYLLVKQKIKKQPQESNSEAGGGGGECSGEEFDWVEGLTHWSNF 120

Query: 122 LRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSR-EMDMLDFAQ----------- 181
           LRYK+VFGD     S+ ND+  V++ D G+   F+      M++++F Q           
Sbjct: 121 LRYKEVFGDFGLVASNGNDIMAVANGDDGDGGGFIGGGGIGMEIVEFGQMGHSGDADFGA 180

Query: 182 -IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNF--- 241
            IDGVDNGVM LGFE++G+EAEEN+N N       +++EDG++ F  E V+   +N    
Sbjct: 181 GIDGVDNGVMGLGFEYDGEEAEENYNGNG------RVREDGDDGFVYEEVETNGSNLNRK 240

Query: 242 KKKRKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQK 301
           KK++KV+K L KKAWGFL +QL  L++ EA+FE+REVER++ERQR E LR E E++WE++
Sbjct: 241 KKRKKVLKGLGKKAWGFLGSQLRNLRETEARFEQREVERERERQRRESLRMECEREWERR 300

Query: 302 WDESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR-EEKLNHEREWEERISKRRI 361
           W+E E + +EREK RD LR QR+QEWEA+EKE  E+ERRR EE+L HEREWEER  +RR+
Sbjct: 301 WEEWEKESLEREKTRDNLRMQRIQEWEALEKESEELERRRREEELLHEREWEERTHRRRL 360

Query: 362 ERKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYL 421
           E K RID+ML+QHRAEM Q+QTRILHEQQN T+QLLGI+SQWT HP+ LSDHTSASNHYL
Sbjct: 361 ESKKRIDEMLSQHRAEMGQMQTRILHEQQNLTNQLLGIMSQWTTHPAALSDHTSASNHYL 420

Query: 422 SQMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           SQMMQNLHHVN +VHD  RVE +NQDDQFIVDG
Sbjct: 421 SQMMQNLHHVNSLVHDDARVEGENQDDQFIVDG 447

[Close]

BLAST of Cp4.1LG17g03000 vs. NCBI nr
Match: gi|645232344|ref|XP_008222824.1| (PREDICTED: LOW QUALITY PROTEIN: PERQ amino acid-rich with GYF domain-containing protein 2-like [Prunus mume])

HSP 1 Score: 530.0 bits (1364), Expect = 3.8e-147
Identity = 288/452 (63.72%), Postives = 346/452 (76.55%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           M+P +RKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKF+PIA +VNS+HHVQDP+AY 
Sbjct: 1   MMPSRRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFKPIACYVNSVHHVQDPIAYR 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKK--PESGVENSGGELKA---EYDWMEGVTYWSN 120
           WQW+WKDVSTKVQNMRHQYLLVKQKIKK  P+ G  + GG  +    E+DWMEG+T+WSN
Sbjct: 61  WQWSWKDVSTKVQNMRHQYLLVKQKIKKQQPDGGASSGGGSGECSGEEFDWMEGLTHWSN 120

Query: 121 FLRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ----------- 180
           FLRYK+VFGDV   N + N+L    + D  N   F+   R M ++DF Q           
Sbjct: 121 FLRYKEVFGDVGIVNCNGNELIASVNGDGENGGVFVGSGRGMGLVDFGQMGHSDGDFGAG 180

Query: 181 IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVD---PKKNNFK 240
           IDGV+NGVM LGFE++G+E EENFN ND      +++EDG++ F CE V+   P     K
Sbjct: 181 IDGVENGVMGLGFEYDGEEGEENFNGND------RVREDGDDRFVCEEVEQNGPSLKKKK 240

Query: 241 KKRKVMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWEQKW 300
           KKR+    L KKAWGFL NQL +LK+MEA+FE+RE ER+++RQR E  R E E++ E KW
Sbjct: 241 KKREASMGLGKKAWGFLGNQLSKLKEMEARFEQREAERERDRQRSESFRMECEQEREWKW 300

Query: 301 DESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR-EEKLNHEREWEERISKRRIE 360
           +E   ++ E+EK R+KL+KQR+ EWEA+EKE  E ERRR EE+L HEREWEER+ +RR E
Sbjct: 301 EEWVNKKEEKEKTREKLKKQRILEWEALEKESEERERRRKEEELIHEREWEERMDRRRSE 360

Query: 361 RKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASNHYLS 420
            K RID+ML  HRAEM Q+QTRILHEQQN TSQLLGI+SQWTAHP+  SDHTSASNHYLS
Sbjct: 361 WKKRIDEMLGHHRAEMGQMQTRILHEQQNLTSQLLGIVSQWTAHPAGXSDHTSASNHYLS 420

Query: 421 QMMQNLHHVNGIVHDGTRVEADNQDDQFIVDG 433
           QMMQNLHHVNG+VH+  RVE +NQDDQFIVDG
Sbjct: 421 QMMQNLHHVNGLVHEDARVEGENQDDQFIVDG 446

[Close]

BLAST of Cp4.1LG17g03000 vs. NCBI nr
Match: gi|1009139643|ref|XP_015887226.1| (PREDICTED: uncharacterized protein LOC107422306 [Ziziphus jujuba])

HSP 1 Score: 526.6 bits (1355), Expect = 4.2e-146
Identity = 282/455 (61.98%), Postives = 353/455 (77.58%), Query Frame = 1


Query: 1   MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIASFVNSMHHVQDPVAYP 60
           M+PP+RKKWTE EE+TLIDKYGEMVSDGTL KMKTREKKF+PIAS+VNS+HH QDP+AYP
Sbjct: 1   MMPPRRKKWTEVEEKTLIDKYGEMVSDGTLLKMKTREKKFKPIASYVNSVHHAQDPIAYP 60

Query: 61  WQWTWKDVSTKVQNMRHQYLLVKQKIKK-PE------SGVENSGGELKAE-YDWMEGVTY 120
           WQW+WKDVSTKVQNMRHQYLLVKQKIKK PE       G   SGGE   E +DWMEG+++
Sbjct: 61  WQWSWKDVSTKVQNMRHQYLLVKQKIKKQPECNSGGGGGGSGSGGECNVEEFDWMEGLSH 120

Query: 121 WSNFLRYKDVFGDVAAANSHYNDLAVVSSSDRGNVDRFLEVSREMDMLDFAQ-------- 180
           WSNFLRYK+VFGDV   N++ NDL  V + D  N   F+  SR +++++F Q        
Sbjct: 121 WSNFLRYKEVFGDVGMVNNNGNDLTAVVNGDGENGGGFVGGSRGIELVEFEQMGHSGDGD 180

Query: 181 ----IDGVDNGVMNLGFEFNGDEAEENFNDNDNDNDNDQLKEDGENSFFCEGVDPKKNNF 240
               IDGV+NGV+ LGFE++G+EAEE +N N       +++EDG++ F  E V+P  ++ 
Sbjct: 181 FGVGIDGVENGVIGLGFEYDGEEAEETYNGNG------RVREDGDDGFVYEEVEPNGSSL 240

Query: 241 KKKRK--VMKRLEKKAWGFLVNQLGRLKDMEAQFEKREVERDQERQRCECLRFEMEKKWE 300
           KKK+K  V+K + KKAWGFL NQL +L++ME + E+REVER++ERQR E LR E E++WE
Sbjct: 241 KKKKKKKVLKGMGKKAWGFLGNQLSKLREMEVRLEQREVERERERQRRESLRLEREREWE 300

Query: 301 QKWDESETQRVEREKARDKLRKQRVQEWEAMEKERLEMERRR--EEKLNHEREWEERISK 360
           +KW+E E +R E+ K+R+KLR QR++EWE M+KE  E ERRR  EE+L  EREWEER+++
Sbjct: 301 RKWEEREKEREEKGKSREKLRLQRIREWEVMDKETEERERRRRREEELIREREWEERMNR 360

Query: 361 RRIERKNRIDDMLNQHRAEMNQIQTRILHEQQNFTSQLLGIISQWTAHPSTLSDHTSASN 420
           RR+E K RID+MLNQHR EM Q+QTRILHEQQN T+QLLGI+SQWT HP+ LSDHT A+N
Sbjct: 361 RRLEWKKRIDEMLNQHREEMGQMQTRILHEQQNLTNQLLGIVSQWTTHPAGLSDHTGANN 420

Query: 421 HYLSQMMQNLHHVNGIVHDGTRVEADNQDDQFIVD 432
           HY+SQMMQNLHHVN +VH   RVE +NQDDQFIVD
Sbjct: 421 HYISQMMQNLHHVNSLVHGDARVEGENQDDQFIVD 449

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g03000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g03000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK54_CUCSA	1.5e-211	86.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G121990 PE=4 SV=1	[more]
W9QRJ0_9ROSA	4.1e-148	64.02	Uncharacterized protein OS=Morus notabilis GN=L484_002832 PE=4 SV=1	[more]
M5XBM5_PRUPE	2.5e-145	63.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005743mg PE=4 SV=1	[more]
I1K3T7_SOYBN	6.1e-144	63.96	Uncharacterized protein OS=Glycine max GN=GLYMA_05G153300 PE=4 SV=1	[more]
V4SBC6_9ROSI	3.4e-142	61.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004964mg PE=4 SV=1	[more]

BLAST of Cp4.1LG17g03000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g03000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114624\|ref\|XP_008457150.1\|	3.4e-212	86.94	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Cucum...	[more]
gi\|778668299\|ref\|XP_011649075.1\|	2.2e-211	86.49	PREDICTED: uncharacterized protein LOC105434578 [Cucumis sativus]	[more]
gi\|703084784\|ref\|XP_010092564.1\|	5.9e-148	64.02	hypothetical protein L484_002832 [Morus notabilis]	[more]
gi\|645232344\|ref\|XP_008222824.1\|	3.8e-147	63.72	PREDICTED: LOW QUALITY PROTEIN: PERQ amino acid-rich with GYF domain-containing ...	[more]
gi\|1009139643\|ref\|XP_015887226.1\|	4.2e-146	61.98	PREDICTED: uncharacterized protein LOC107422306 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g03000.1	Cp4.1LG17g03000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 309..329 score: -coord: 342..369 score: -coord: 245..265 scor
None	No IPR available	PANTHER	PTHR37076	FAMILY NOT NAMED	coord: 2..432 score: 1.7E
None	No IPR available	PANTHER	PTHR37076:SF1	SUBFAMILY NOT NAMED	coord: 2..432 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g03000	CmaCh17G000830	Cucurbita maxima (Rimu)	cmacpeB380
Cp4.1LG17g03000	CmaCh08G010010	Cucurbita maxima (Rimu)	cmacpeB916
Cp4.1LG17g03000	CmoCh08G009740	Cucurbita moschata (Rifu)	cmocpeB853
Cp4.1LG17g03000	CmoCh17G000900	Cucurbita moschata (Rifu)	cmocpeB342
Cp4.1LG17g03000	Cla010564	Watermelon (97103) v1	cpewmB343
Cp4.1LG17g03000	Csa2G121990	Cucumber (Chinese Long) v2	cpecuB304
Cp4.1LG17g03000	MELO3C020354	Melon (DHL92) v3.5.1	cpemeB313
Cp4.1LG17g03000	Lsi09G011190	Bottle gourd (USVL1VR-Ls)	cpelsiB252
Cp4.1LG17g03000	MELO3C020354.2	Melon (DHL92) v3.6.1	cpemedB365
Cp4.1LG17g03000	CsaV3_2G011170	Cucumber (Chinese Long) v3	cpecucB0374
Cp4.1LG17g03000	Bhi12G001275	Wax gourd	cpewgoB0383
Cp4.1LG17g03000	CsGy2G009070	Cucumber (Gy14) v2	cgybcpeB200
Cp4.1LG17g03000	Carg11041	Silver-seed gourd	carcpeB1503
Cp4.1LG17g03000	Carg10154	Silver-seed gourd	carcpeB0324

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG17g03000	Cp4.1LG12g00770	Cucurbita pepo (Zucchini)	cpecpeB161

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g03000	Melon (DHL92) v3.6.1	cpemedB362
Cp4.1LG17g03000	Melon (DHL92) v3.6.1	cpemedB371
Cp4.1LG17g03000	Silver-seed gourd	carcpeB0323
Cp4.1LG17g03000	Silver-seed gourd	carcpeB1330
Cp4.1LG17g03000	Cucumber (Chinese Long) v3	cpecucB0375
Cp4.1LG17g03000	Cucumber (Chinese Long) v3	cpecucB0385
Cp4.1LG17g03000	Cucurbita pepo (Zucchini)	cpecpeB333
Cp4.1LG17g03000	Cucurbita pepo (Zucchini)	cpecpeB342
Cp4.1LG17g03000	Cucumber (Gy14) v1	cgycpeB0547
Cp4.1LG17g03000	Cucumber (Gy14) v1	cgycpeB0675
Cp4.1LG17g03000	Cucurbita maxima (Rimu)	cmacpeB823
Cp4.1LG17g03000	Cucurbita moschata (Rifu)	cmocpeB777
Cp4.1LG17g03000	Wild cucumber (PI 183967)	cpecpiB304
Cp4.1LG17g03000	Cucumber (Chinese Long) v2	cpecuB305
Cp4.1LG17g03000	Watermelon (Charleston Gray)	cpewcgB293
Cp4.1LG17g03000	Watermelon (Charleston Gray)	cpewcgB303
Cp4.1LG17g03000	Watermelon (97103) v1	cpewmB331
Cp4.1LG17g03000	Watermelon (97103) v1	cpewmB334
Cp4.1LG17g03000	Melon (DHL92) v3.5.1	cpemeB310
Cp4.1LG17g03000	Melon (DHL92) v3.5.1	cpemeB316
Cp4.1LG17g03000	Cucumber (Gy14) v2	cgybcpeB201