Cp4.1LG17g01980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g01980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG17 : 1234413 .. 1234688 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAGCATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCGGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

mRNA sequence

ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAGCATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCGGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

Coding sequence (CDS)

ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAGCATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCGGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

Protein sequence

MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFYRKRPYKKYPPYKRYPPYKKRPPYKKYPPSSN
Homology
[Close]
BLAST of Cp4.1LG17g01980 vs. TrEMBL
Match: A0A0A0LI79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
           MF+KYFLLLLLAVVLLTTTQALKHPS+S  EVIP   V++ KLP TT TD      +EES
Sbjct: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLP-TTITD-----PNEES 74

Query: 61  KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
           KFYR     K+PYK+ PPYKRYPPYKKRPPYKKYPPSS+
Sbjct: 75  KFYRRPSPYKKPYKR-PPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of Cp4.1LG17g01980 vs. TrEMBL
Match: A0A0A0LNP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1   MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
           MF KYFLLLLLAVVLLTTTQALKHP +S  E IP   +++ KLP TT TD      +EES
Sbjct: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLP-TTITD-----PNEES 74

Query: 61  KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
           KF+R     K+PYK+ PPYK+YPPYKKRPPYKKYPPSS+
Sbjct: 75  KFFRRPSPYKKPYKR-PPYKKYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of Cp4.1LG17g01980 vs. TrEMBL
Match: Q8H0R6_CUCSA (Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
          MF KYFLLLLLAVVLLTTTQALKHP +S  E IP   +++ KLP TT TD      +EES
Sbjct: 1  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLP-TTITD-----PNEES 60

Query: 61 KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
          KF+R     K+PYK+ PPYK+YPPYKKRPPYKKYPPSS+
Sbjct: 61 KFFRRPSPYKKPYKR-PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of Cp4.1LG17g01980 vs. NCBI nr
Match: gi|778668784|ref|XP_004147144.2| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
           MF+KYFLLLLLAVVLLTTTQALKHPS+S  EVIP   V++ KLP TT TD      +EES
Sbjct: 15  MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLP-TTITD-----PNEES 74

Query: 61  KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
           KFYR     K+PYK+ PPYKRYPPYKKRPPYKKYPPSS+
Sbjct: 75  KFYRRPSPYKKPYKR-PPYKRYPPYKKRPPYKKYPPSSH 106

[Close]
BLAST of Cp4.1LG17g01980 vs. NCBI nr
Match: gi|659121395|ref|XP_008460638.1| (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-18
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1 

Query: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFY 60
          MF+KYFLLLLLA VLL+TTQALKHPS S  EVIP ++    +   T  +P   +EESKFY
Sbjct: 1  MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADP---NEESKFY 60

Query: 61 R-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
          R     K+PYK+ PPYK+YPPYKKRPPYKKYPPSS+
Sbjct: 61 RRPFPYKKPYKR-PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of Cp4.1LG17g01980 vs. NCBI nr
Match: gi|525507184|ref|NP_001267631.1| (uncharacterized protein LOC101210961 precursor [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1  MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
          MF KYFLLLLLAVVLLTTTQALKHP +S  E IP   +++ KLP TT TD      +EES
Sbjct: 1  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLP-TTITD-----PNEES 60

Query: 61 KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
          KF+R     K+PYK+ PPYK+YPPYKKRPPYKKYPPSS+
Sbjct: 61 KFFRRPSPYKKPYKR-PPYKKYPPYKKRPPYKKYPPSSH 92

[Close]
BLAST of Cp4.1LG17g01980 vs. NCBI nr
Match: gi|700206487|gb|KGN61606.1| (hypothetical protein Csa_2G176690 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1   MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIP---VSNQKLPSTTATDTEPASEHEES 60
           MF KYFLLLLLAVVLLTTTQALKHP +S  E IP   +++ KLP TT TD      +EES
Sbjct: 15  MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLP-TTITD-----PNEES 74

Query: 61  KFYR-----KRPYKKYPPYKRYPPYKKRPPYKKYPPSSN 92
           KF+R     K+PYK+ PPYK+YPPYKKRPPYKKYPPSS+
Sbjct: 75  KFFRRPSPYKKPYKR-PPYKKYPPYKKRPPYKKYPPSSH 106

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g01980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g01980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI79_CUCSA2.0e-2071.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176190 PE=4 SV=1[more]
A0A0A0LNP2_CUCSA2.1e-1766.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176690 PE=4 SV=1[more]
Q8H0R6_CUCSA2.1e-1766.67Proline-rich protein OS=Cucumis sativus GN=prp1 PE=2 SV=1[more]
BLAST of Cp4.1LG17g01980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g01980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668784|ref|XP_004147144.2|2.9e-2071.72PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis sativus][more]
gi|659121395|ref|XP_008460638.1|7.8e-1864.58PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo][more]
gi|525507184|ref|NP_001267631.1|3.0e-1766.67uncharacterized protein LOC101210961 precursor [Cucumis sativus][more]
gi|700206487|gb|KGN61606.1|3.0e-1766.67hypothetical protein Csa_2G176690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01980.1Cp4.1LG17g01980.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g01980CmaCh08G010840Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g01980CmoCh08G010600Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g01980Carg10963Silver-seed gourdcarcpeB1503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g01980Silver-seed gourdcarcpeB0323
Cp4.1LG17g01980Silver-seed gourdcarcpeB0333
Cp4.1LG17g01980Silver-seed gourdcarcpeB1058
Cp4.1LG17g01980Silver-seed gourdcarcpeB1096
Cp4.1LG17g01980Silver-seed gourdcarcpeB1330
Cp4.1LG17g01980Cucumber (Chinese Long) v3cpecucB0377
Cp4.1LG17g01980Cucumber (Chinese Long) v3cpecucB0385
Cp4.1LG17g01980Wax gourdcpewgoB0388
Cp4.1LG17g01980Wax gourdcpewgoB0404
Cp4.1LG17g01980Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG17g01980Cucurbita pepo (Zucchini)cpecpeB257
Cp4.1LG17g01980Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g01980Cucurbita pepo (Zucchini)cpecpeB340
Cp4.1LG17g01980Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g01980Cucumber (Gy14) v1cgycpeB0675
Cp4.1LG17g01980Cucumber (Gy14) v1cgycpeB1009
Cp4.1LG17g01980Cucurbita maxima (Rimu)cmacpeB266
Cp4.1LG17g01980Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g01980Cucurbita maxima (Rimu)cmacpeB528
Cp4.1LG17g01980Cucurbita maxima (Rimu)cmacpeB631
Cp4.1LG17g01980Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g01980Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g01980Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g01980Cucurbita moschata (Rifu)cmocpeB486
Cp4.1LG17g01980Cucurbita moschata (Rifu)cmocpeB580
Cp4.1LG17g01980Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g01980Wild cucumber (PI 183967)cpecpiB306
Cp4.1LG17g01980Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g01980Cucumber (Chinese Long) v2cpecuB306
Cp4.1LG17g01980Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g01980Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g01980Bottle gourd (USVL1VR-Ls)cpelsiB267
Cp4.1LG17g01980Bottle gourd (USVL1VR-Ls)cpelsiB269
Cp4.1LG17g01980Watermelon (Charleston Gray)cpewcgB282
Cp4.1LG17g01980Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g01980Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g01980Watermelon (Charleston Gray)cpewcgB306
Cp4.1LG17g01980Watermelon (97103) v1cpewmB314
Cp4.1LG17g01980Watermelon (97103) v1cpewmB331
Cp4.1LG17g01980Watermelon (97103) v1cpewmB326
Cp4.1LG17g01980Watermelon (97103) v1cpewmB334
Cp4.1LG17g01980Melon (DHL92) v3.5.1cpemeB310
Cp4.1LG17g01980Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g01980Cucumber (Gy14) v2cgybcpeB203
Cp4.1LG17g01980Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g01980Melon (DHL92) v3.6.1cpemedB362
Cp4.1LG17g01980Melon (DHL92) v3.6.1cpemedB371