Carg10963 (gene) Silver-seed gourd

Overview
NameCarg10963
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_027 : 96808 .. 97083 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAACATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCAGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

mRNA sequence

ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAACATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCAGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

Coding sequence (CDS)

ATGTTTGTCAAGTACTTCCTATTGCTTCTCCTCGCAGTGGTGCTTCTTACCACCACTCAAGCTCTGAAACATCCCTCCGACTCTGCCCATGAAGTGATTCCGGTCAGCAACCAAAAGCTTCCGAGCACCACCGCCACCGACACCGAGCCTGCGTCAGAGCATGAGGAATCCAAGTTCTACAGGAAGCGACCCTACAAAAAGTACCCACCCTACAAGAGGTACCCACCATACAAGAAACGCCCCCCATACAAGAAGTACCCACCATCCTCCAACTAA

Protein sequence

MFVKYFLLLLLAVVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATDTEPASEHEESKFYRKRPYKKYPPYKRYPPYKKRPPYKKYPPSSN
Homology
[Close]
BLAST of Carg10963 vs. NCBI nr
Match: XP_022930415.1 (uncharacterized protein LOC111436870 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-09
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE 50
          MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE
Sbjct: 1  MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE 49

[Close]
BLAST of Carg10963 vs. NCBI nr
Match: XP_023513909.1 (repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-09
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 1  MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE 50
          MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE
Sbjct: 1  MFVKYFXXXXXXXXXXXXXQALKHPSDSAHEVIPVSNQKLPSTTATDTE 49

The following BLAST results are available for this feature:
BLAST of Carg10963 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930415.14.4e-09100.00uncharacterized protein LOC111436870 [Cucurbita moschata][more]
XP_023513909.14.4e-09100.00repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg10963 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg10963 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg10963 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10963-RACarg10963-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..48

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10963Cla007581Watermelon (97103) v1carwmB1077
Carg10963CmaCh08G010840Cucurbita maxima (Rimu)carcmaB1495
Carg10963CmoCh08G010600Cucurbita moschata (Rifu)carcmoB1452
Carg10963Cp4.1LG17g01980Cucurbita pepo (Zucchini)carcpeB1503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg10963Silver-seed gourdcarcarB267
Carg10963Silver-seed gourdcarcarB275
Carg10963Silver-seed gourdcarcarB601
Carg10963Silver-seed gourdcarcarB615
Carg10963Silver-seed gourdcarcarB649
Carg10963Cucumber (Gy14) v2carcgybB1056
Carg10963Cucumber (Gy14) v2carcgybB1059
Carg10963Cucumber (Gy14) v1carcgyB1190
Carg10963Cucumber (Gy14) v1carcgyB1195
Carg10963Cucurbita maxima (Rimu)carcmaB1485
Carg10963Cucurbita maxima (Rimu)carcmaB1489
Carg10963Cucurbita maxima (Rimu)carcmaB1491
Carg10963Cucurbita maxima (Rimu)carcmaB1492
Carg10963Cucurbita maxima (Rimu)carcmaB1494
Carg10963Cucurbita moschata (Rifu)carcmoB1443
Carg10963Cucurbita moschata (Rifu)carcmoB1448
Carg10963Cucurbita moschata (Rifu)carcmoB1449
Carg10963Cucurbita moschata (Rifu)carcmoB1450
Carg10963Cucurbita moschata (Rifu)carcmoB1451
Carg10963Cucurbita pepo (Zucchini)carcpeB1501
Carg10963Cucurbita pepo (Zucchini)carcpeB1502
Carg10963Cucurbita pepo (Zucchini)carcpeB1504
Carg10963Cucurbita pepo (Zucchini)carcpeB1506
Carg10963Cucurbita pepo (Zucchini)carcpeB1507
Carg10963Wild cucumber (PI 183967)carcpiB1112
Carg10963Wild cucumber (PI 183967)carcpiB1115
Carg10963Cucumber (Chinese Long) v2carcuB1090
Carg10963Cucumber (Chinese Long) v2carcuB1093
Carg10963Cucumber (Chinese Long) v3carcucB1123
Carg10963Cucumber (Chinese Long) v3carcucB1126
Carg10963Bottle gourd (USVL1VR-Ls)carlsiB981
Carg10963Bottle gourd (USVL1VR-Ls)carlsiB983
Carg10963Bottle gourd (USVL1VR-Ls)carlsiB984
Carg10963Melon (DHL92) v3.5.1carmeB1046
Carg10963Melon (DHL92) v3.5.1carmeB1050
Carg10963Melon (DHL92) v3.6.1carmedB1060
Carg10963Melon (DHL92) v3.6.1carmedB1064
Carg10963Watermelon (Charleston Gray)carwcgB1045
Carg10963Watermelon (Charleston Gray)carwcgB1046
Carg10963Watermelon (Charleston Gray)carwcgB1050
Carg10963Watermelon (97103) v1carwmB1073
Carg10963Watermelon (97103) v1carwmB1075
Carg10963Watermelon (97103) v2carwmbB1131
Carg10963Watermelon (97103) v2carwmbB1133
Carg10963Watermelon (97103) v2carwmbB1137
Carg10963Wax gourdcarwgoB1265
Carg10963Wax gourdcarwgoB1270
Carg10963Wax gourdcarwgoB1271