Cp4.1LG16g09300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g09300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionImportin-5
LocationCp4.1LG16 : 8663683 .. 8670926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTAGGACCCTAACTCGGCTGTTATCCGAGAGAGTATGGGCAATGCCCCAAGTAAGAATTGCATGTTCCCTTCTTCTGCTGAGTAAATGTACACAACTTGATTATTTTAGAACTTCTGTTGAGTAAATTTACGCAACTTGACTATCTTAGGACTTCTCCTGTTCAGTTGCTTTATGCTGATAATAAATTCTCAATTTCTTTTCTTTTATTGCTATCCATGCTCCAAGTAGGCTTATCACAAACTACTCCAACATTTCTACAGGACTCAATGGATACTTGATTGTGGTCTCTCATTCTCTATAAGTTGTGTACGGTTTTGACAGGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTAGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTAGGGTAGTGTTTGCTGGCCATATTTTAGAATGAGCCATTTATGACCCAATTCAGTGAGTGGGTGGAAATGATTTTCATGATGAGAACTACTGTAAGTTGCTCCCTTTGATTGACTGTATTCTGTATTCTTTATTGCATTATGATTTTGTTACATAGAGCGAATGGATTTAATATTCAGAGCAATTTGAGAAATGTGATCGGACAATTGGTTGTGCTGAATAGAACCAAACACATGCTAATGTGGTTGCTTTCAATGTTTTTCTTTAATCCTTGTAATACCCGAGCCTCAATTGAAAGTTTAAAATCTAAATTTACCTTGAAAGTCGATCTCTCAATTTTATTGAAGGTCTTAGAGACCAAAATCCGAGATGAGGCCGAAGAGAAAAATGATGAGGAATAAAAGAACTTAAACAACCATGTAAAAGAAAAATGATAGAAAAGTAAAAGAAAAAATGATAGAAAATTGGAAGGATGGTCAAGGTTAATCCCTGGAGGGTAATTTGGTCATTATACCTCCCTTTTAGTAACATACGAATAAAAGAGAAAAAGAAAAATAAAGGGGAAAAGGAAGAGAAGGAAAATGGCGGAAAGAAAAGATATAAATAGTGAGAGAAAGAAAATTCTAGAGAGAGAGGGAGGTAACCGCCGCTCCAGCCACGAGGAGTCCGGTTCCGGCCGAGCCTTCTTCATGAAATCTTCACAGAACTTAGAGGAGAACATTCTTAACTTTTAGATCGTCCAAAAACATCAAGAAACGAGGAAAAATCTAAAGGTAAAGTTCTTGAATCCAGATTCTCGAAATTGGTTCAGATCTGTGAGATATAGTAAGAGTTAGAGCCTGAAATTTGAGTATGTTAATCTACAGAGGATTACGCTCAAAACCTGTGAAGGAAGTTGTAATCGATTCAGACCGGAAAATGGGAGTTTCGGCATTCGTCAAAGAGGTAGGTATTGATGTTTCTTGCCCTTTTCGGACTAAGGTAATTATCCCGGGGATTAGAAATAAATTACAAGAAAAATACCTGCCTAAAGATGAATATACGCCCTACAAATCTCGTGAAGGAACCATGTTGATCCGAGTTAGGTAGAACGAAATGTGAAAATGGAAAAAAGTAATCGAACGCTGGAAATCGCAGGAGAAAGGAGGAGGAGGATGCGCTTCGCCGGAGAAGAAGGGCCACGTGTCAAGCGTCCATTGGAGGCGAAGAAATCAAAGAAATACTTCGCGTCGGGCGGGGTTCGATGGCCGGCGGCCCGCTACTCGAGTTCGCGACCCGATGACCCGCGCGCAACCCGGACCACCGACCCGGCTTCTCGTTGCCACGCGTCAGCGTAAAAGAACTCGAATTTCCAGCGCGCCCTTCCGGTTTCGAACCGACGACCTCGACCTCGGCTGACCGTCCAGCGGGCGTCACGTGGCAACACCTCAGCGCGCGTCTTCCCTCCCTCATGCGCGTCCGTGCGCGTGTAGCACCTTCCCACGCGCGTGTGGTGCTGTTTTCAGCCCGTTCGACCTCTGTTTGCCCGATTTCCCTCCCGATTCCAACTCTAACCATATTTTTATATGGAATAGGGCTTAAATGAGAAAATTCAGTATTTGTGGACACTCTATTGGTGTAGAAATGCTCAACGAAGAACACATGTCAATCAGGTAAGTCACCACCCGGAACTTTAGGAAGAAATACTTGTAGGAGTCGCTTGGTTATGCATGCATGCTAGTTTAATTACCTTAGGTGGTAGTTTTCCTTGAATGTAAGTAATTTGATTGTTAAGAGTATGGATGTATTATGTGAAATATTACGAGAATTATCTGAGTGTTGCTATTATGTTTTAAGCTTCCGCTTTATATGTAAATGTTTAATTCATGCTGTAAGGAGAATAGGAACTTGTGAACTCTGCGCTCCGGGATTTGATGGATGTCATGGCCCCGTTGAGCATGTGTGTTTATTTTGCATGAATTTTTGCATGATGATGCTAGATGATAGTTGTGTGCACACTCAAGTTAATTTCTACGTCCCACAAGAATGATAAAGTCTAGGGATATGTGGTTAGAGTAACAAGACCTAAGGTATAGACCTAACCTTTCCCTAGTAGGCTAACAGACCACCACGGCATACGAACCATCTCTAGAGTACCCTTAGGCTGCATGTGTGTGATTGGTGTCACAGCTTCGTGGGGGACTAGGGGGTTCCTGATCAGAATCCGTCTGCTCCTAGCCATTTTAGCATGGAAAACGTGAGCCCACGTCGTATAGACCATTTAGCTGGATGGGTTAAGGGGGGTAGCTCTCCCCGACCAGGGGGACTGTCATGGGCCTAAGGGGTTGCAGCTCACCCCCNCCCTAGGCAAGTTACCAGTTAGTCTCAGAGTCATGCCGAGGTAGCTACTCGTAGGGCACCAGTCATTACACAAGTCAGCATAAGGGAGTTCTAAAGAATCCTATAAATAGAAGGTCTAAGAACCAAAGAAGCCCGAAGGGGGCAAGTCCCAAGGGGTGCGACAAGAGCCCACAAGTAGGTGGCTTACTGAGTATAATTTTTATACTCATTCCTTTTTATCCTTCTTTTTCAGGTGCCGGTCAAGGTGGAGGAGCGTTCGAGAGCTGTGCGGTCACAGAGGGGGTCGTTCCGGAGCGTCAATCCCTTGTCAGTCTTTCGAGTCTTTTGTGTTTCATTTTACATTTGTAATTTCCTTTGTAATATTTTCCAAACAAATCTTATTTGACTTTAATTTTGGTGTGTTGACTCATTTTTCTTGATTTAAATTTTATCAGATTTTCATCTCCCATTTTATCTTCTTTTAAATTTTATTTGTTTTCGATTTTGTCTTTTGAGTCACGGTCTGATTTTCGAAGCCTCGAAAATCGGGTCTTGACAATCCTACCCAAAAGATGGTTTGAGACCTTCAACATTAATTGTGTGCAAAAGTCGTTGATCGTTGCCTATATCTGTTTTGTACAAGCAGCGAGATGCTACTTGGTGCATGTTTAGATAACCTGGGTCAATGCTTCGTTCTTTTTCCTCGAGGGGAGTATTTGCTTGTGCAGGTTCTATGTGCGGGAAAGGATTTAGCAACAGAGAAAAGTGCTAGCCGAATGACTAGTTTGATGAGACAGATGCAACAGAGTTTACCGCCTTCTACTTTAGCCTCAACTTGGTCCTACTTGCGACCCCAGCACCAACTTGCTTTGCCGTCTATCCTCTCATAGTCTCTCAAAGGTGACTCTGGATCCTGCCGCTGCCCCCGGGCGGCACACTTTTCTGTTCTTGTTTATGTTTGAATTATATTCGTCCCCATTCTTTGCCAAAAAATGCTCTCAAGCATGAGTTTTGTTTGGTCCCTTGCAGAGAGATGCTGTCATTTGATGATAGTGAAAATCAGGGTTCGTTACGATTTTTTTCTAGTTTCGGGTAGATAGGTCGGAGGCAATCCTTTTACAGTTCTGTCTTGGTCCAATTAACTAGTATCATTGTCATTATAAATTTTCATTGCAGTTTCAGAATATATCAAATGAATTTTGTGATTGTGTTTCCTTGATTTGTTTGGAATTCTATTTCCAATTAGCAAAGAAACTTGACGTCTTTTACCTGGTCTCCCTCTTCTCTGTCTGTATTACAGAATTTATGAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTAAGGCTTGCTTAGAGAGTGGAAAAAAAGTAACACAGGGATGTCTGGACTTGTCGTAGTCTTGGTAGATATTGCTTTGGGGCAAATAAAACAAGTGGACTCAAGGTCAGACAATGCACGTTCAGACAACTTTGCAATTTCATTCTTAACGTCGTGCGTCCACGAGTTTGTTGTGTTTGTTTGTTTGATTTTTCCAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCTGTAACTCCTTCCATTAGCTGTTAATCATCCCATCAAATTCCTCCCTTTACTGCCGTCATGACTCATTATTCTCCATTTGGGTTTCCATTATACAGACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACGGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCATCACTTCTTCCTTCAATCTCAATTCCATTCGTAAACTTTGCAATATAGATGGAGGGTTCAGTTAAGAAACAACAGCATAAAGAGGTTTCAGTTTCAGGCAGCAAAGTTGGGAAATGCAAGGACAGATCTCGTAGACGCAGCTTCGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGATCAAAGACACAACCCATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCACAGCATACGATGAAGCCGCCCGCCTCCTCCGTGGTGCCAATACTCGTACCAACTTCGCAACCCATCTCAAATCCACCTCCGCCCTCTCTTTCAAAATTAGAAATCTCCTCAACCAAAAGATCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCACTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTGCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCTCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGTGGGTCAGATATTCTGCCCAAGTTGATTATACCCCGCTTTAATTAATTCCCTTTCTACTGCTATTTGAATGCAGCTGATAAGGCAAAAGAAAATCAAACAAGCAGGCAGCACCCAATGCGCTCATACATGTACAACTTTTTCATATTATAAAAACACATGTACAACTTGTGATATTGTCTATTACAATATCAATCCATCCACAACTCAAGCAAAGATAGAATTACAGTCGAAACACTGGCGTACATATTCCTGATTTCATACAAAGAGCCACAAAGATACGTAATGGAAATTTACTCCAAGACAAAACAGAATCGCTTATGGAAATGAAAACGGCAGGCTTTTGAACTAGACAAGAAATTATCAGGATAATAGTACCATGCACACTTTAGTAATCTTCACCTTCCTCATCATCATCATCTGCACCTTCAGCGCCAACTTCTTCATAGTCTTTTTCGAGAGCAGCCAGATCTTCCCGCGCCTCTGAGAACTCCCCTTCTTCCATGCCCTCACCGACATACCAGTGAACAAATGCTCTCTTTGCATACATCAGGTCAAATTTATGGTCGATGCGAGAGAACACCTCAGCTACTGCTGTGTTATTGCTGATCATGCAAACAGCTCTCTGCACCAAGGCCAAATCACCACCTGGTACAACTGTTGGAGGCTGGTAGTTTATACCACATTTGAAGCCAGTTGGACACCTACAAAACAGATCCATTATCAAGTTTTTCTAGAATCCAAAATCAAATTAATGTTCAAATGACAATGCCCTTGAGGCCAAATCTTGCATCCGCCAAGATAACTTTAACTTAAACCTGCTCCAATCTAGAATGAACATGGAGATGACCATGCCTGAAAGTAATGTGCTCTCACTATCAACAAATTCCTTATTCTTCGTGATATATGACAAGAAAAATTTCATCTATTAATTGGGAAAGGGAGGCAGAACTTGGTAGATTTACTTTTCTCTAAAGGTTGTTTTCCCCGAGTTCTGATGGTCTTTTTTTAGTTTATATATTTACAGATCAACTGAGCTGTTCTTCCTTTACTACCAGCTTGTGAATGATTATTTCAGAAGCTTAGTAATCTCCATATTCCCGACCTATAATAATCCAACTTTTAGAAGTCACCTCCATCATTCTACAAATTAGTTCTCAAAAGCTACTATAAGAAACGAATTACCAAAAACAATCCCCGAGGCAACTGAGAGTGGCTCCTAATTTTCCTGGATAAGCTTTAAAACTTCCCAAAATAAACAACACATTTCTTCCACTTACCAGTCAACAAACTGCACGGTGCGCTTTGTCTTAATGGTGGCAACAGCAGCATTGACATCTTTAGGTACAACATCTCCTCGGTACATTAAGCAACAAGCCATGTATTTCCCATGCCTAGGATCACATTTTGCCATCATGCTCGAAGGCTCAAAAACTGCATTTGTGATCTCAGGTACGGATAGCTGTTCATGGTAAGCCTTCTCTGCTGAGATAACTGGAGCATATGAGGAGAGCATGAAATGGATACGAGGATATGGTACAAGGTTCGTCTGGAACTCTGTTATGTCCACGTTGATGGCTCCATCAAATCTCAATGAAGTGGTCAAGGATGAAATGATTTGAGATATCAACCTATTCAAGTTGGTATATGTAGGTCTATCAATATCCAGAGATCTCCTACAAATGTCGTAGATAGCTTCATTGTCTAGAAGAACAGCAACATCCGTATGCTCAAGAAGGGAATGAGTGGAAAGAACGCTGTTGTAAGGCTCCACGACAGCAGTTGAAACCTGCAATTGAATCAGAGCCCAAAATTGTTGAGACAAACAACAATTTCCTGATTATCCCAGAATGGCCATTCGAGTGGTTCTTCCTCTTAAAA

mRNA sequence

GTGTAGGACCCTAACTCGGCTGTTATCCGAGAGAGTATGGGCAATGCCCCAAGTTCTATGTGCGGGAAAGGATTTAGCAACAGAGAAAAGTGCTAGCCGAATGACTAGTTTGATGAGACAGATGCAACAGAGTTTACCGCCTTCTACTTTAGCCTCAACTTGGTCCTACTTGCGACCCCAGCACCAACTTGCTTTGCCAGAGATGCTGTCATTTGATGATAGTGAAAATCAGGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACATCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCACTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTGCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCTCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGTGGCTGATAAGGCAAAAGAAAATCAAACAAGCAGGCAGCACCCAATGCGCTCATACATATCAACTGAGCTGTTCTTCCTTTACTACCAGCTTGTGAATGATTATTTCAGAAGCTTATCAACAAACTGCACGGTGCGCTTTGTCTTAATGGTGGCAACAGCAGCATTGACATCTTTAGGTACAACATCTCCTCGGTACATTAAGCAACAAGCCATGTATTTCCCATGCCTAGGATCACATTTTGCCATCATGCTCGAAGGCTCAAAAACTGCATTTGTGATCTCAGAAGAACAGCAACATCCGTATGCTCAAGAAGGGAATGAGTGGAAAGAACGCTGTTGTAAGGCTCCACGACAGCAGTTGAAACCTGCAATTGAATCAGAGCCCAAAATTGTTGAGACAAACAACAATTTCCTGATTATCCCAGAATGGCCATTCGAGTGGTTCTTCCTCTTAAAA

Coding sequence (CDS)

ATGCCCCAAGTTCTATGTGCGGGAAAGGATTTAGCAACAGAGAAAAGTGCTAGCCGAATGACTAGTTTGATGAGACAGATGCAACAGAGTTTACCGCCTTCTACTTTAGCCTCAACTTGGTCCTACTTGCGACCCCAGCACCAACTTGCTTTGCCAGAGATGCTGTCATTTGATGATAGTGAAAATCAGGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACATCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCACTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTGCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCTCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGTGGCTGATAAGGCAAAAGAAAATCAAACAAGCAGGCAGCACCCAATGCGCTCATACATATCAACTGAGCTGTTCTTCCTTTACTACCAGCTTGTGAATGATTATTTCAGAAGCTTATCAACAAACTGCACGGTGCGCTTTGTCTTAATGGTGGCAACAGCAGCATTGACATCTTTAGGTACAACATCTCCTCGGTACATTAAGCAACAAGCCATGTATTTCCCATGCCTAGGATCACATTTTGCCATCATGCTCGAAGGCTCAAAAACTGCATTTGTGATCTCAGAAGAACAGCAACATCCGTATGCTCAAGAAGGGAATGAGTGGAAAGAACGCTGTTGTAAGGCTCCACGACAGCAGTTGAAACCTGCAATTGAATCAGAGCCCAAAATTGTTGAGACAAACAACAATTTCCTGATTATCCCAGAATGGCCATTCGAGTGGTTCTTCCTCTTAAAA

Protein sequence

MPQVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLSFDDSENQGKKSGLQTEVADHSWYGVRLRRRRLLKFNISLKRSSSKTSPTKLGPITEIEGAHSGLSCSTATNQEIHKTFDNADWSSACSGEVEVLGLRQFSHSWWHLPLGLNLEMDEPPDPLLTHQDRQVAEMSCDSEQLDLTSIPMCAVNGMSEYLGTTYDAFDSVADKAKENQTSRQHPMRSYISTELFFLYYQLVNDYFRSLSTNCTVRFVLMVATAALTSLGTTSPRYIKQQAMYFPCLGSHFAIMLEGSKTAFVISEEQQHPYAQEGNEWKERCCKAPRQQLKPAIESEPKIVETNNNFLIIPEWPFEWFFLLK
Homology
[Close]
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match: A0A0A9EGI7_ARUDO (Tua6 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 261 STNCTVRFVLMVATAALTSLGTTSPRYIKQQAMYFPCLGSHFAIMLEGSKTAFVIS 317
           STN TV  VLMVATAALTS GTTSPRYIKQQAMY PCLGSHFAIMLEGSKTA VIS
Sbjct: 11  STNWTVLLVLMVATAALTSFGTTSPRYIKQQAMYLPCLGSHFAIMLEGSKTALVIS 66

[Close]
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match: A0A061F0K0_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025911 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+R +QQSLPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1091 EVLCAGKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILS 1144

[Close]
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match: A0A061F1M1_THECC (ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_025911 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+R +QQSLPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 968  EVLCAGKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILS 1021

[Close]
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match: A0A0B2PAL2_GLYSO (Importin-5 OS=Glycine soja GN=glysoja_010729 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++A RM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 984  EVLCAGKDLATEQTAGRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1037

[Close]
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match: A0A0B2SUQ2_GLYSO (Importin-5 (Fragment) OS=Glycine soja GN=glysoja_015452 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3   QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
           +VLCAGKDLATE++A RM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 894 EVLCAGKDLATEQTAGRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 947

[Close]
BLAST of Cp4.1LG16g09300 vs. TAIR10
Match: AT5G19820.1 (AT5G19820.1 ARM repeat superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-10
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 8    GKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            GKD+ T+++A RM +++RQ+QQ+LPPS LASTWS L+P+ QLAL  MLS
Sbjct: 1067 GKDVVTQETAGRMINILRQLQQTLPPSALASTWSTLKPEQQLALQSMLS 1115

[Close]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match: gi|449462776|ref|XP_004149116.1| (PREDICTED: importin-5 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1060 EVLCAGKDLATEQTASRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1113

[Close]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match: gi|659082709|ref|XP_008441992.1| (PREDICTED: importin-5-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1060 EVLCAGKDLATEQTASRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1113

[Close]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match: gi|747083569|ref|XP_011089154.1| (PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Sesamum indicum])

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            ++LCAGKDLATE++ASRM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1049 EILCAGKDLATEQTASRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1102

[Close]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match: gi|720065765|ref|XP_010276366.1| (PREDICTED: importin-5-like [Nelumbo nucifera])

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+RQ+QQ+LPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1062 EVLCAGKDLATEQTASRMINLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILS 1115

[Close]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match: gi|590640873|ref|XP_007030074.1| (ARM repeat superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVLCAGKDLATEKSASRMTSLMRQMQQSLPPSTLASTWSYLRPQHQLALPEMLS 57
            +VLCAGKDLATE++ASRM +L+R +QQSLPPSTLASTWS L+PQ QLAL  +LS
Sbjct: 1091 EVLCAGKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILS 1144

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g09300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g09300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9EGI7_ARUDO2.9e-1789.29Tua6 OS=Arundo donax PE=4 SV=1[more]
A0A061F0K0_THECC1.1e-1174.07ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025911 PE=4 S... [more]
A0A061F1M1_THECC1.1e-1174.07ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_025911 PE=4 S... [more]
A0A0B2PAL2_GLYSO1.4e-1172.22Importin-5 OS=Glycine soja GN=glysoja_010729 PE=4 SV=1[more]
A0A0B2SUQ2_GLYSO1.4e-1172.22Importin-5 (Fragment) OS=Glycine soja GN=glysoja_015452 PE=4 SV=1[more]
BLAST of Cp4.1LG16g09300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19820.11.8e-1061.22 ARM repeat superfamily protein[more]
BLAST of Cp4.1LG16g09300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462776|ref|XP_004149116.1|6.9e-1274.07PREDICTED: importin-5 [Cucumis sativus][more]
gi|659082709|ref|XP_008441992.1|6.9e-1274.07PREDICTED: importin-5-like [Cucumis melo][more]
gi|747083569|ref|XP_011089154.1|9.0e-1272.22PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Sesamum indicum][more]
gi|720065765|ref|XP_010276366.1|9.0e-1274.07PREDICTED: importin-5-like [Nelumbo nucifera][more]
gi|590640873|ref|XP_007030074.1|1.5e-1174.07ARM repeat superfamily protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0052546 cell wall pectin metabolic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0052541 plant-type cell wall cellulose metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006607 NLS-bearing protein import into nucleus
biological_process GO:0000060 protein import into nucleus, translocation
biological_process GO:0006610 ribosomal protein import into nucleus
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005829 cytosol
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0034399 nuclear periphery
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008139 nuclear localization sequence binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008536 Ran GTPase binding
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g09300.1Cp4.1LG16g09300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10527IMPORTIN BETAcoord: 4..48
score: 1.9
NoneNo IPR availablePANTHERPTHR10527:SF29SUBFAMILY NOT NAMEDcoord: 4..48
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g09300CmaCh20G000110Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g09300MELO3C014721.2Melon (DHL92) v3.6.1cpemedB324
Cp4.1LG16g09300CsaV3_4G017480Cucumber (Chinese Long) v3cpecucB0345
Cp4.1LG16g09300Bhi10G000392Wax gourdcpewgoB0354
Cp4.1LG16g09300CsGy4G011680Cucumber (Gy14) v2cgybcpeB495
Cp4.1LG16g09300Carg06965Silver-seed gourdcarcpeB0733
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g09300Cp4.1LG05g05540Cucurbita pepo (Zucchini)cpecpeB310
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g09300Cucumber (Gy14) v1cgycpeB0409
Cp4.1LG16g09300Cucurbita maxima (Rimu)cmacpeB627
Cp4.1LG16g09300Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g09300Cucurbita moschata (Rifu)cmocpeB576
Cp4.1LG16g09300Wild cucumber (PI 183967)cpecpiB282
Cp4.1LG16g09300Cucumber (Chinese Long) v2cpecuB278
Cp4.1LG16g09300Bottle gourd (USVL1VR-Ls)cpelsiB227
Cp4.1LG16g09300Watermelon (Charleston Gray)cpewcgB255
Cp4.1LG16g09300Watermelon (97103) v1cpewmB287
Cp4.1LG16g09300Melon (DHL92) v3.5.1cpemeB278