Cp4.1LG16g04740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g04740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaA06g01810D protein
LocationCp4.1LG16 : 5888156 .. 5888362 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGCTTTTGCTTTCTGGTGGATCAGAAGCGGAGGATACGGCGGAGTAGGCCGGCCCCTGGAATTTGCTCCAGGTGCGGCGGCGGAGCCAGTGTAGCCGACATGAAAACCGCCACCAGATTCTGTCACGTCCCATTTTACTGGAAATCATGGAGAGCCCTCATCTGTACCTTTTGTGGATCTGTTCTTCGATCCTATCGCTAA

mRNA sequence

ATGGTTTGCTTTTGCTTTCTGGTGGATCAGAAGCGGAGGATACGGCGGAGTAGGCCGGCCCCTGGAATTTGCTCCAGGTGCGGCGGCGGAGCCAGTGTAGCCGACATGAAAACCGCCACCAGATTCTGTCACGTCCCATTTTACTGGAAATCATGGAGAGCCCTCATCTGTACCTTTTGTGGATCTGTTCTTCGATCCTATCGCTAA

Coding sequence (CDS)

ATGGTTTGCTTTTGCTTTCTGGTGGATCAGAAGCGGAGGATACGGCGGAGTAGGCCGGCCCCTGGAATTTGCTCCAGGTGCGGCGGCGGAGCCAGTGTAGCCGACATGAAAACCGCCACCAGATTCTGTCACGTCCCATTTTACTGGAAATCATGGAGAGCCCTCATCTGTACCTTTTGTGGATCTGTTCTTCGATCCTATCGCTAA

Protein sequence

MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFCGSVLRSYR
Homology
[Close]
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match: A0A068VM26_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00006999001 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-30
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ R++RRS+PA GICSRCGGGASVADMKTATRFCHVPFYWK+WRA+ICTFC
Sbjct: 1  MVCFCFLVDQTRKVRRSKPAAGICSRCGGGASVADMKTATRFCHVPFYWKTWRAIICTFC 60

Query: 61 GSVLRSY 68
          G++LRSY
Sbjct: 61 GAILRSY 67

[Close]
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match: A0A0J8EGC2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g208810 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-30
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ+R++RRS+PA G C+RCGGGASVADMKTATRFCHVPFYWKSWRA+ICTFC
Sbjct: 1  MVCFCFLVDQQRQVRRSKPAAGTCTRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60

Query: 61 GSVLRSY 68
          GS+LRSY
Sbjct: 61 GSILRSY 67

[Close]
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match: A0A022QES8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017542mg PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-30
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ R++R+S+PA GICSRCGGGASVADMKTATRFC+VPFYWK+WRA+ICTFC
Sbjct: 1  MVCFCFLVDQTRKVRQSKPAAGICSRCGGGASVADMKTATRFCYVPFYWKTWRAIICTFC 60

Query: 61 GSVLRSYR 69
          GS+LRSYR
Sbjct: 61 GSILRSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match: M5WWH0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023818mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-30
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MV FCFLVDQKR++RRS+PA GICSRCGGGASVADMKTATRFC+VPFYWKSWRA+ICTFC
Sbjct: 1  MVVFCFLVDQKRQVRRSKPAAGICSRCGGGASVADMKTATRFCYVPFYWKSWRAIICTFC 60

Query: 61 GSVLRSYR 69
          G++LRSYR
Sbjct: 61 GAILRSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match: A0A151SQ79_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003150 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.0e-30
Identity = 57/68 (83.82%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ+R+++RS+PA GICSRCGGGASVADMKTATRFC+VPFYWKSWRA++CTFC
Sbjct: 1  MVCFCFLVDQRRQMQRSKPAAGICSRCGGGASVADMKTATRFCYVPFYWKSWRAIVCTFC 60

Query: 61 GSVLRSYR 69
          G+VLRSY+
Sbjct: 61 GAVLRSYQ 68

[Close]
BLAST of Cp4.1LG16g04740 vs. TAIR10
Match: AT1G52855.1 (AT1G52855.1 unknown protein)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-28
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ R+++RS+PA G CSRCG  AS+ADMKT+TRFC +P YW+SWRA++C+FC
Sbjct: 1  MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

Query: 61 GSVLRSYR 69
          GSVL+SYR
Sbjct: 61 GSVLKSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. TAIR10
Match: AT3G15534.1 (AT3G15534.1 unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-27
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQKR+++ S+PA G CSRCG GA VADMKT+TRFC +P Y +SWRA++C+FC
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GSVLRSYR 69
          GSVL+SYR
Sbjct: 61 GSVLKSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. TAIR10
Match: AT2G20835.1 (AT2G20835.1 unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-24
Identity = 43/67 (64.18%), Postives = 57/67 (85.07%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          M  FCFLVDQ++++R  +PA G+CSRCGGGA VADM+T+TRFC VPFY K+W+A++C  C
Sbjct: 1  MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCGVPFYRKAWKAIVCHIC 60

Query: 61 GSVLRSY 68
          G+VL+SY
Sbjct: 61 GAVLKSY 67

[Close]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match: gi|659094706|ref|XP_008448201.1| (PREDICTED: uncharacterized protein LOC103490465 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-32
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MV FCF+VDQKR++RRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVFFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match: gi|449444390|ref|XP_004139958.1| (PREDICTED: uncharacterized protein LOC101208066 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-31
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MV FCF+VDQKR++RRSRPAPGIC+RCGGGASVADMKTA RFCHVPFYWKSWRALICTFC
Sbjct: 1  MVFFCFMVDQKRKVRRSRPAPGICARCGGGASVADMKTAVRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match: gi|661868824|emb|CDP21659.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-30
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ R++RRS+PA GICSRCGGGASVADMKTATRFCHVPFYWK+WRA+ICTFC
Sbjct: 1  MVCFCFLVDQTRKVRRSKPAAGICSRCGGGASVADMKTATRFCHVPFYWKTWRAIICTFC 60

Query: 61 GSVLRSY 68
          G++LRSY
Sbjct: 61 GAILRSY 67

[Close]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match: gi|731356487|ref|XP_010689698.1| (PREDICTED: uncharacterized protein LOC104903371 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 2.3e-30
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ+R++RRS+PA G C+RCGGGASVADMKTATRFCHVPFYWKSWRA+ICTFC
Sbjct: 1  MVCFCFLVDQQRQVRRSKPAAGTCTRCGGGASVADMKTATRFCHVPFYWKSWRAIICTFC 60

Query: 61 GSVLRSY 68
          GS+LRSY
Sbjct: 61 GSILRSY 67

[Close]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match: gi|848901489|ref|XP_012850855.1| (PREDICTED: uncharacterized protein LOC105970568 [Erythranthe guttata])

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-30
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFLVDQ R++R+S+PA GICSRCGGGASVADMKTATRFC+VPFYWK+WRA+ICTFC
Sbjct: 1  MVCFCFLVDQTRKVRQSKPAAGICSRCGGGASVADMKTATRFCYVPFYWKTWRAIICTFC 60

Query: 61 GSVLRSYR 69
          GS+LRSYR
Sbjct: 61 GSILRSYR 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A068VM26_COFCA1.2e-3086.57Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00006999001 PE=4 SV=1[more]
A0A0J8EGC2_BETVU1.6e-3086.57Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g208810 PE=4 S... [more]
A0A022QES8_ERYGU2.1e-3085.29Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017542mg PE=4 SV=1[more]
M5WWH0_PRUPE2.7e-3086.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023818mg PE=4 SV=1[more]
A0A151SQ79_CAJCA6.0e-3083.82Uncharacterized protein OS=Cajanus cajan GN=KK1_003150 PE=4 SV=1[more]
BLAST of Cp4.1LG16g04740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52855.11.0e-2872.06 unknown protein[more]
AT3G15534.11.5e-2772.06 unknown protein[more]
AT2G20835.12.6e-2464.18 unknown protein[more]
BLAST of Cp4.1LG16g04740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094706|ref|XP_008448201.1|1.4e-3294.12PREDICTED: uncharacterized protein LOC103490465 [Cucumis melo][more]
gi|449444390|ref|XP_004139958.1|1.2e-3191.18PREDICTED: uncharacterized protein LOC101208066 [Cucumis sativus][more]
gi|661868824|emb|CDP21659.1|1.7e-3086.57unnamed protein product [Coffea canephora][more]
gi|731356487|ref|XP_010689698.1|2.3e-3086.57PREDICTED: uncharacterized protein LOC104903371 [Beta vulgaris subsp. vulgaris][more]
gi|848901489|ref|XP_012850855.1|3.0e-3085.29PREDICTED: uncharacterized protein LOC105970568 [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04740.1Cp4.1LG16g04740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320FAMILY NOT NAMEDcoord: 1..68
score: 3.8
NoneNo IPR availablePANTHERPTHR33320:SF2SUBFAMILY NOT NAMEDcoord: 1..68
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g04740Cucsa.147920Cucumber (Gy14) v1cgycpeB0393
Cp4.1LG16g04740CmaCh19G009700Cucurbita maxima (Rimu)cmacpeB525
Cp4.1LG16g04740CmaCh20G005580Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g04740CmoCh19G010010Cucurbita moschata (Rifu)cmocpeB483
Cp4.1LG16g04740CmoCh20G005840Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g04740Cla013583Watermelon (97103) v1cpewmB293
Cp4.1LG16g04740MELO3C018760Melon (DHL92) v3.5.1cpemeB273
Cp4.1LG16g04740MELO3C013523Melon (DHL92) v3.5.1cpemeB266
Cp4.1LG16g04740ClCG02G017420Watermelon (Charleston Gray)cpewcgB259
Cp4.1LG16g04740CSPI07G04360Wild cucumber (PI 183967)cpecpiB301
Cp4.1LG16g04740MELO3C013523.2Melon (DHL92) v3.6.1cpemedB309
Cp4.1LG16g04740CsaV3_7G004170Cucumber (Chinese Long) v3cpecucB0367
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g04740Wax gourdcpewgoB0365
Cp4.1LG16g04740Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g04740Cucurbita pepo (Zucchini)cpecpeB311
Cp4.1LG16g04740Cucumber (Gy14) v1cgycpeB0292
Cp4.1LG16g04740Cucurbita maxima (Rimu)cmacpeB628
Cp4.1LG16g04740Cucurbita moschata (Rifu)cmocpeB577
Cp4.1LG16g04740Wild cucumber (PI 183967)cpecpiB289
Cp4.1LG16g04740Cucumber (Chinese Long) v2cpecuB288
Cp4.1LG16g04740Bottle gourd (USVL1VR-Ls)cpelsiB224
Cp4.1LG16g04740Cucumber (Gy14) v2cgybcpeB762
Cp4.1LG16g04740Silver-seed gourdcarcpeB0043
Cp4.1LG16g04740Silver-seed gourdcarcpeB0465
Cp4.1LG16g04740Cucumber (Chinese Long) v3cpecucB0355