Cp4.1LG16g02310 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g02310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mads box protein
Location	Cp4.1LG16 : 4409291 .. 4410223 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCTCTCGGTCGCCGGAAAATTGAAATAAAGAAGCTTGAGAAGAAGAGTACCCAGCAAGTTACCTTCTCTAAACGCCGCGCCGGACTCTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCGCCTCTTCCCGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGATCGTTTTCTCACCGGAAATTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTTTGGACGAGTTGAACCGCGATTTTGACGATGTGGCCGCAGAGTACGACATCGAGAAGAGGCGCACGGCAGAGCGGTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGATCTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCTGTTACCTGCTCTGCAGCCGTCGACACCTCCATCGATCGACCTCGTCGAAAACCTCGAACGGCCGCCGACGCCTCCTCCATCAATTGGCCGCTTCGGAAACCTCCAATGGCCGTCGACGCCTCCATCGATTGACCTGGTCGAAAATCTCCAACGGCCGCCGACATCTCCATCAATTGGCCTCTTCGAAAACCTCCAATGGCCGTCGACGCCTCCATCGATCGACCTCGTCGAAAATCTCCAACAGCCGCAGACGCCTCCATCAATTGGCCTCTTCGAAAAAATCCAATGGCCGTCGACGCCTCCATCGATTGACTTCGTCGAAAGCCTCCAATGGTCGCCGATGCCGTCGATTCATCTTGTTGAAAACGACCAATGTCTGCTATCGTCGTTTCAGATCTCTGGAAACCACTCTGTCGCACGCGGACTGAATATGCTAGACTAG

mRNA sequence

ATGAAGAAATCTCTCGGTCGCCGGAAAATTGAAATAAAGAAGCTTGAGAAGAAGAGTACCCAGCAAGTTACCTTCTCTAAACGCCGCGCCGGACTCTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCGCCTCTTCCCGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGATCGTTTTCTCACCGGAAATTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTTTGGACGAGTTGAACCGCGATTTTGACGATGTGGCCGCAGAGTACGACATCGAGAAGAGGCGCACGGCAGAGCGGTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGATCTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCTGTTACCTGCTCTGCAGCCGTCGACACCTCCATCGATCGACCTCGTCGAAAACCTCGAACGGCCGCCGACGCCTCCTCCATCAATTGGCCGCTTCGGAAACCTCCAATGGCCGTCGACGCCTCCATCGATTGACCTGGTCGAAAATCTCCAACGGCCGCCGACATCTCCATCAATTGGCCTCTTCGAAAACCTCCAATGGCCGTCGACGCCTCCATCGATCGACCTCGTCGAAAATCTCCAACAGCCGCAGACGCCTCCATCAATTGGCCTCTTCGAAAAAATCCAATGGCCGTCGACGCCTCCATCGATTGACTTCGTCGAAAGCCTCCAATGGTCGCCGATGCCGTCGATTCATCTTGTTGAAAACGACCAATGTCTGCTATCGTCGTTTCAGATCTCTGGAAACCACTCTGTCGCACGCGGACTGAATATGCTAGACTAG

Coding sequence (CDS)

ATGAAGAAATCTCTCGGTCGCCGGAAAATTGAAATAAAGAAGCTTGAGAAGAAGAGTACCCAGCAAGTTACCTTCTCTAAACGCCGCGCCGGACTCTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCGCCTCTTCCCGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGATCGTTTTCTCACCGGAAATTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTTTGGACGAGTTGAACCGCGATTTTGACGATGTGGCCGCAGAGTACGACATCGAGAAGAGGCGCACGGCAGAGCGGTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGATCTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCTGTTACCTGCTCTGCAGCCGTCGACACCTCCATCGATCGACCTCGTCGAAAACCTCGAACGGCCGCCGACGCCTCCTCCATCAATTGGCCGCTTCGGAAACCTCCAATGGCCGTCGACGCCTCCATCGATTGACCTGGTCGAAAATCTCCAACGGCCGCCGACATCTCCATCAATTGGCCTCTTCGAAAACCTCCAATGGCCGTCGACGCCTCCATCGATCGACCTCGTCGAAAATCTCCAACAGCCGCAGACGCCTCCATCAATTGGCCTCTTCGAAAAAATCCAATGGCCGTCGACGCCTCCATCGATTGACTTCGTCGAAAGCCTCCAATGGTCGCCGATGCCGTCGATTCATCTTGTTGAAAACGACCAATGTCTGCTATCGTCGTTTCAGATCTCTGGAAACCACTCTGTCGCACGCGGACTGAATATGCTAGACTAG

Protein sequence

MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTFGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQPSTPPSIDLVENLERPPTPPPSIGRFGNLQWPSTPPSIDLVENLQRPPTSPSIGLFENLQWPSTPPSIDLVENLQQPQTPPSIGLFEKIQWPSTPPSIDFVESLQWSPMPSIHLVENDQCLLSSFQISGNHSVARGLNMLD

Homology

[Close]

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.1e-26
Identity = 64/169 (37.87%), Postives = 102/169 (60.36%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           +KKS GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LCGAE+AI+V S   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVESLLDRFLTGNSAPP--------KPAEAYLPLDELNRDFDDVAAEYDIEK---- 120
           FGHPNV+S++DRF+  N  PP        +       + +LN     V ++ + EK    
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 --RRTAERLSNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKF 156
             ++  E+      WW++P+E + + +L+ F+ +L +L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.2e-23
Identity = 71/208 (34.13%), Postives = 118/208 (56.73%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           K+S+GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LCGAEI I+V S   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVESLLDRFLTGNSAPPKPAE----AYLPLDELNRDFDDVAAEYDIEKRR--TAERL 121
           GHP+VES+LDR+++ N+     ++    +     ELN     + +E + EK++    E +
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 SNDRF------WWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQ 181
             +        WW++P+E M + +L+  + +L +LR  V   +  F   + +       +
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVFGFLDNK 238

Query: 182 PSTPPSIDLVENLERPPTPPPSIGRFGN 198
            + PP +++       P+ P +I  F N
Sbjct: 239 VTVPPYVNM-------PSGPSNIYNFAN 259

[Close]

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-20
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           +KK+LGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA++V S   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVESLLDRF----LTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLS 120
           FGHPNV+ LLD F    +  N+     +   L +  LN+ + +V AE + E++    R  
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 NDR------FWWDEPLESMKIDELKRFRSSLVDLRGKVAER 152
           N+R       WW +    + + +       L DL+  V E+
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEK 162

[Close]

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.8e-20
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           +K+LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI+V S   K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVESLLD----RFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN 121
           GHPNV  LLD    R +  N+     +   L +  LN    +V AE + E+      + N
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 122 DR------FWWDEPLESMKIDELKRFRSSLVDLRGKVAERV 153
           +R       WW      + + +    +  L  L+ +V E+V
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-17
Identity = 57/164 (34.76%), Postives = 95/164 (57.93%), Query Frame = 1


Query: 5   LGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTFGHP 64
           +GRRKI+++ ++  +T+QVTFSKRR GLF KA+EL+ LC AE+ I+V S   K +++G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 65  NVESLLDRFL----TGNSAPPKPAEAYLP-LDELNRDFDDVAAEYDIEKRR------TAE 124
           N++S+ +RF+      +S   + +  Y P L  L+   D +  E + EK R        E
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 125 RLSNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTA 158
              ++RF   E +E++ +DEL  ++  L  + G++  +V    A
Sbjct: 121 SAGDERF--KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of Cp4.1LG16g02310 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.6e-56
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKK+LGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLCGAE+AI+V S  +KL+ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERL----- 120
           FGHP+V+ LLDR+LTGN +PPKPAE+Y+P+ E NRDF D A E++ EK+R AE +     
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPAL----Q 180
              N  FWW E +E ++++ELK FRS+L+DLR KVAERVEK TA+R  G LLPAL    Q
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PSTPPSIDLVENLERPPTPPPSIGRFGN 198
           P T  S  L+ N +  P PP +    GN
Sbjct: 189 PMTSSSFHLIGNHQELP-PPTAFHLAGN 215

[Close]

BLAST of Cp4.1LG16g02310 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 5.9e-56
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKKS GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LCGAEIAIL+ SSR K+YT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN-DR 120
           FGHPNV++LLDRFLTGN  PPKPAEAYLPL ELN D     AE++IEK+R  ERL N +R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQPS 172
           FWWDE LE M++DELK FRSSL+ LR  VA R+EK  AMR E    P + PS
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMED---PPVTPS 169

[Close]

BLAST of Cp4.1LG16g02310 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 115/164 (70.12%), Postives = 133/164 (81.10%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV SS +K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSNDRF 120
           FGHPNV+ L+DRFLT N  PPKP EAYLPL+ELNRD  DV AE++ EKRR         F
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSL 165
           WWDE +E M I++LKRFRSSL++LRGKVAERVE+  A+R +G L
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFL 164

[Close]

BLAST of Cp4.1LG16g02310 vs. TrEMBL
Match: A0A022RIX0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020886mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           KK++GRRKIEIKK+EKKS+ QVTFSKRR GLF KA+ELSVLCGAEIAILV S  NK+Y++
Sbjct: 13  KKTMGRRKIEIKKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIYSY 72

Query: 62  GHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRD-FDDVAAEYDIEKR---RTAERLSN 121
           GHP+VE+LLDR+ TG       A + +P  E  R  +D+   + +I KR   + +   SN
Sbjct: 73  GHPSVETLLDRYQTGGGG--GAASSIIPYREDGRSKYDEAVKKLEIVKRSMKQESNSSSN 132

Query: 122 DRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSL 165
            RFWWDEP+E M++ EL+ +  ++  L+  V  RV++   M K+ S+
Sbjct: 133 TRFWWDEPMEGMELYELEEYAEAMEALKDNVLRRVDE---MEKQKSI 174

[Close]

BLAST of Cp4.1LG16g02310 vs. TrEMBL
Match: A0A022RK64_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019999mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 78/160 (48.75%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 5   LGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTFGHP 64
           +GRRKIEIKK+EKKS+ QVTFSKRR GLF KA+ELSVLCGAEIAILV S  NK+Y++GHP
Sbjct: 1   MGRRKIEIKKIEKKSSLQVTFSKRRTGLFRKASELSVLCGAEIAILVQSPANKIYSYGHP 60

Query: 65  NVESLLDRFLTGNSAPPKPAEAYLPLDELNRD-FDDVAAEYDIEKRRTAERLSNDRFWWD 124
           +VE+LL R+ TG       + + +P  E  R  +D+   + +I K R+ ++ SN RFWWD
Sbjct: 61  SVETLLHRYQTGGGG--GASSSIIPYSEDGRSKYDEAVKKLEIVK-RSMKQESNTRFWWD 120

Query: 125 EPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGS 164
           EP++ M++ EL+ +  ++  L+  V+ RVE+    +   +
Sbjct: 121 EPMDGMELYELEEYVEAMEALKDNVSRRVEEIEKQKSNAA 157

[Close]

BLAST of Cp4.1LG16g02310 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-27
Identity = 64/169 (37.87%), Postives = 102/169 (60.36%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           +KKS GR+KIE+ K++ +S  QVTFSKRR+GLF KA+EL  LCGAE+AI+V S   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVESLLDRFLTGNSAPP--------KPAEAYLPLDELNRDFDDVAAEYDIEK---- 120
           FGHPNV+S++DRF+  N  PP        +       + +LN     V ++ + EK    
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 --RRTAERLSNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKF 156
             ++  E+      WW++P+E + + +L+ F+ +L +L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of Cp4.1LG16g02310 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-24
Identity = 71/208 (34.13%), Postives = 118/208 (56.73%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           K+S+GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LCGAEI I+V S   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVESLLDRFLTGNSAPPKPAE----AYLPLDELNRDFDDVAAEYDIEKRR--TAERL 121
           GHP+VES+LDR+++ N+     ++    +     ELN     + +E + EK++    E +
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 SNDRF------WWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQ 181
             +        WW++P+E M + +L+  + +L +LR  V   +  F   + +       +
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVFGFLDNK 238

Query: 182 PSTPPSIDLVENLERPPTPPPSIGRFGN 198
            + PP +++       P+ P +I  F N
Sbjct: 239 VTVPPYVNM-------PSGPSNIYNFAN 259

[Close]

BLAST of Cp4.1LG16g02310 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-22
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           +KK+LGRRK+EI K+ K+S  QVTFSKR+AGLF KA+E   LC A+IA++V S   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVESLLDRF----LTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLS 120
           FGHPNV+ LLD F    +  N+     +   L +  LN+ + +V AE + E++    R  
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 NDR------FWWDEPLESMKIDELKRFRSSLVDLRGKVAER 152
           N+R       WW +    + + +       L DL+  V E+
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEK 162

[Close]

BLAST of Cp4.1LG16g02310 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-21
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           +K+LGRRKIE+ K+  +S  QVTFSKRR+GLF K +EL  LC AEIAI+V S   K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVESLLD----RFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN 121
           GHPNV  LLD    R +  N+     +   L +  LN    +V AE + E+      + N
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 122 DR------FWWDEPLESMKIDELKRFRSSLVDLRGKVAERV 153
           +R       WW      + + +    +  L  L+ +V E+V
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of Cp4.1LG16g02310 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-19
Identity = 61/151 (40.40%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
           K + GR+KIEIKK+E+++ +QVTFSKRR GLF K+AELSVL GA+IA++  S  +++Y F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSNDRFW 121
           GH  V++L+D++L  +   P   E Y           D AA  D E RR          W
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY---------SGDNAA--DEESRRP---------W 163

Query: 122 WDEPLESMKIDELKRFRSSLVDLRGKVAERV 153
           W+ P+ES+  +EL+ + ++L  LR  + +++
Sbjct: 164 WERPVESVPEEELEEYMAALSMLRENIGKKI 169

[Close]

BLAST of Cp4.1LG16g02310 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 7.9e-62
Identity = 136/204 (66.67%), Postives = 155/204 (75.98%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKKSLGRRKIEIKKL+KKSTQQVTFSKRRAGLFNKAAELS+LCGAEIA+LV SSR K+YT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVESLLDRFLTG-NSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN-D 120
           FGHPNV++LLDRFLTG N+ PPKPAEAYLP+ ELNRD     AE++IEKRR AER  N +
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 RFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQPSTPPSIDL 180
           RFWWDEPLESMKIDELKRFRSSLV+LR  V ER+EK              +    PSID+
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIED-----------RHCVTPSIDI 180

Query: 181 VENLERPPTPPPSIGRFGNLQWPS 203
            E+++ P T    +    N   PS
Sbjct: 181 AESIQWPETSSIQLAAGNNHCLPS 193

[Close]

BLAST of Cp4.1LG16g02310 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKK+LGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLCGAE+AI+V S  +KL+ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERL----- 120
           FGHP+V+ LLDR+LTGN +PPKPAE+Y+P+ E NRDF D A E++ EK+R AE +     
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPAL----Q 180
              N  FWW E +E ++++ELK FRS+L+DLR KVAERVEK TA+R  G LLPAL    Q
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PSTPPSIDLVENLERPPTPPPSIGRFGN 198
           P T  S  L+ N +  P PP +    GN
Sbjct: 189 PMTSSSFHLIGNHQELP-PPTAFHLAGN 215

[Close]

BLAST of Cp4.1LG16g02310 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKK+LGR+KIEIKKLEKKS++QVTFSKRRAGLF KA ELSVLCGAE+AI+V S  +KL+ 
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERL----- 120
           FGHP+V+ LLDR+LTGN +PPKPAE+Y+P+ E NRDF D A E++ EK+R AE +     
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPAL----Q 180
              N  FWW E +E ++++ELK FRS+L+DLR KVAERVEK TA+R  G LLPAL    Q
Sbjct: 121 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

Query: 181 PSTPPSIDLVENLERPPTPPPSIGRFGN 198
           P T  S  L+ N +  P PP +    GN
Sbjct: 181 PMTSSSFHLIGNHQELP-PPTAFHLAGN 207

[Close]

BLAST of Cp4.1LG16g02310 vs. NCBI nr
Match: gi|449443690|ref|XP_004139610.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 8.5e-56
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKKS GRRKIEIK+L+K +T+QVTFSKRR GLFNKAAELS+LCGAEIAIL+ SSR K+YT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSN-DR 120
           FGHPNV++LLDRFLTGN  PPKPAEAYLPL ELN D     AE++IEK+R  ERL N +R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSLLPALQPS 172
           FWWDE LE M++DELK FRSSL+ LR  VA R+EK  AMR E    P + PS
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMED---PPVTPS 169

[Close]

BLAST of Cp4.1LG16g02310 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 115/164 (70.12%), Postives = 133/164 (81.10%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV SS +K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVESLLDRFLTGNSAPPKPAEAYLPLDELNRDFDDVAAEYDIEKRRTAERLSNDRF 120
           FGHPNV+ L+DRFLT N  PPKP EAYLPL+ELNRD  DV AE++ EKRR         F
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEPLESMKIDELKRFRSSLVDLRGKVAERVEKFTAMRKEGSL 165
           WWDE +E M I++LKRFRSSL++LRGKVAERVE+  A+R +G L
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFL 164

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g02310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL62_ARATH	9.1e-26	37.87	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1	[more]
AGL61_ARATH	4.2e-23	34.13	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1	[more]
AGL23_ARATH	1.2e-20	38.51	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1	[more]
AGL28_ARATH	9.8e-20	38.51	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1	[more]
AGL29_ARATH	1.2e-17	34.76	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]

BLAST of Cp4.1LG16g02310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE01_CUCSA	2.6e-56	59.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1	[more]
A0A0A0LW53_CUCSA	5.9e-56	69.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1	[more]
A0A0A0LLS2_CUCSA	1.0e-55	70.12	Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1	[more]
A0A022RIX0_ERYGU	1.8e-33	50.90	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020886mg PE=4 SV=1	[more]
A0A022RK64_ERYGU	3.5e-32	48.75	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019999mg PE=4 SV=1	[more]

BLAST of Cp4.1LG16g02310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	5.1e-27	37.87	AGAMOUS-like 62	[more]
AT2G24840.1	2.4e-24	34.13	AGAMOUS-like 61	[more]
AT1G65360.1	6.5e-22	38.51	AGAMOUS-like 23	[more]
AT1G01530.1	5.5e-21	38.51	AGAMOUS-like 28	[more]
AT1G17310.1	1.4e-19	40.40	MADS-box transcription factor family protein	[more]

BLAST of Cp4.1LG16g02310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118116\|ref\|XP_008458954.1\|	7.9e-62	66.67	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|700204855\|gb\|KGN59988.1\|	3.8e-56	59.62	hypothetical protein Csa_3G860240 [Cucumis sativus]	[more]
gi\|778686644\|ref\|XP_004147877.2\|	3.8e-56	59.62	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|449443690\|ref\|XP_004139610.1\|	8.5e-56	69.77	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|449463992\|ref\|XP_004149713.1\|	1.4e-55	70.12	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g02310.1	Cp4.1LG16g02310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 42..63 score: 2.5E-20coord: 7..27 score: 2.5E-20coord: 27..42 score: 2.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 15..61 score: 4.6
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 5..64 score: 5.0
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 5..65 score: 26
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 6..75 score: 1.57
None	No IPR available	unknown	Coil	Coil	coord: 90..110 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 6..282 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g02310	CmaCh20G008590	Cucurbita maxima (Rimu)	cmacpeB565
Cp4.1LG16g02310	Carg23640	Silver-seed gourd	carcpeB1113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g02310	Cucumber (Chinese Long) v3	cpecucB0334
Cp4.1LG16g02310	Wax gourd	cpewgoB0348
Cp4.1LG16g02310	Wax gourd	cpewgoB0363
Cp4.1LG16g02310	Cucurbita pepo (Zucchini)	cpecpeB255
Cp4.1LG16g02310	Cucurbita pepo (Zucchini)	cpecpeB309
Cp4.1LG16g02310	Cucurbita pepo (Zucchini)	cpecpeB324
Cp4.1LG16g02310	Cucumber (Gy14) v1	cgycpeB0246
Cp4.1LG16g02310	Cucurbita maxima (Rimu)	cmacpeB526
Cp4.1LG16g02310	Cucurbita maxima (Rimu)	cmacpeB626
Cp4.1LG16g02310	Cucurbita moschata (Rifu)	cmocpeB484
Cp4.1LG16g02310	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g02310	Cucurbita moschata (Rifu)	cmocpeB575
Cp4.1LG16g02310	Wild cucumber (PI 183967)	cpecpiB269
Cp4.1LG16g02310	Cucumber (Chinese Long) v2	cpecuB267
Cp4.1LG16g02310	Bottle gourd (USVL1VR-Ls)	cpelsiB220
Cp4.1LG16g02310	Bottle gourd (USVL1VR-Ls)	cpelsiB231
Cp4.1LG16g02310	Watermelon (Charleston Gray)	cpewcgB251
Cp4.1LG16g02310	Watermelon (Charleston Gray)	cpewcgB267
Cp4.1LG16g02310	Watermelon (97103) v1	cpewmB304
Cp4.1LG16g02310	Watermelon (97103) v1	cpewmB309
Cp4.1LG16g02310	Melon (DHL92) v3.5.1	cpemeB255
Cp4.1LG16g02310	Melon (DHL92) v3.5.1	cpemeB272
Cp4.1LG16g02310	Cucumber (Gy14) v2	cgybcpeB193
Cp4.1LG16g02310	Melon (DHL92) v3.6.1	cpemedB299
Cp4.1LG16g02310	Melon (DHL92) v3.6.1	cpemedB319
Cp4.1LG16g02310	Melon (DHL92) v3.6.1	cpemedB321
Cp4.1LG16g02310	Silver-seed gourd	carcpeB1242
Cp4.1LG16g02310	Silver-seed gourd	carcpeB1358