Cp4.1LG16g01030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g01030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGb|AAF01580.1
LocationCp4.1LG16 : 1855254 .. 1856567 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTGAGCGAAAGAAAATCCGAGAAAAGGTCAAATGAGGAAGGGACCTGAAATGCATAATAAACAATGGCGACGAGCGTCCTGTAATTCACTCACTCGGACTTTCGGAGAACTGAAGCGCACGGGCGCAGGAACCGACTTCAATCCGCACACAGCACTGTGGATTTGACTGATTGCTTCGATGATTGATTGATTGATTGATTCATTCTTTCATTCGGGTTCGAAAGAGTGGATTTGTTCGAGCTAAAGTTCAAGCAAGAGTTGAGTTCTTCCTTTTATCTGTAATCTTCATTTCTTGTTTGTTTATTCGAAGAAATCATCGAGACACCATCATCCATCTGTGAATCATTACGGGACAGATACAGAATTGGGATTTAAGTTATAGGTCATCTTTCTTCTGCCCCCACTGGGTTAGGGTTTTCTTTTCCGTTTTTCTTTTGGGTTTCACTCTATATTTATACATCCATCTTACTCTCACTGCCTCTGAGTTGTTTAAATGTCCAAAAGTGGGAGGTGGCACGCCTACGACCCAATTCTGCTGCTGAATTTAACGCCGGTTTGAGACGCAGGGCCATTCTGGTTCGGATCATTCCTCTATTAGTTGTTTGGAGCTAAATTTGAGCTAGAAGTAGAAGATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGCAACGAATTGTCCTTCCTCCCTCTCATTTCCTTTCTCCCAGCATCTCAACTTCATTATTACTTCCTCACGTTTTCTTTCTAAAACCCATTTCACGTTTTCAATTTTCAACATAATGTACCGTTAATTGAGTATTATTTCCTTCATTAAGAATGTTGTAGGAATGTAGAGAGACGTGCTGCAGGACCCGAACCTTTTTACTTCATCGAAAATCTGTTCACCCTTTCTGTGCAATTATCCATACCAGAAAATTCACCTGCTTGTTCCTGATCCTAGTTTGCATTTTTAATGACCCATTACCGTTTTACATATCACGCCACGAACATTTGACTAAATTATACTATAAATATTGTGGCTACAGCTCAGCCTCCATAGTTTAATGTTATATGCTGATATGAGTGTATTTAAATACTATTAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

mRNA sequence

TACTGAGCGAAAGAAAATCCGAGAAAAGGTCAAATGAGGAAGGGACCTGAAATGCATAATAAACAATGGCGACGAGCGTCCTGTAATTCACTCACTCGGACTTTCGGAGAACTGAAGCGCACGGGCGCAGGAACCGACTTCAATCCGCACACAGCACTGTGGATTTGACTGATTGCTTCGATGATTGATTGATTGATTGATTCATTCTTTCATTCGGGTTCGAAAGAGTGGATTTGTTCGAGCTAAAGTTCAAGCAAGAGGGCCATTCTGGTTCGGATCATTCCTCTATTAGTTGTTTGGAGCTAAATTTGAGCTAGAAGTAGAAGATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

Coding sequence (CDS)

ATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

Protein sequence

MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQVEENNRLRIELQKKIQELEKCVSTIS
Homology
[Close]
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match: A0A0A0LN47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336690 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGF+GRSLAEKFSELGVSA  AEQSN   S+NHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSN---SHNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENNRLRIELQKKIQELEK
Sbjct: 61 VEENNRLRIELQKKIQELEK 77

[Close]
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match: A0A067DK24_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-13
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG  G +LA+KFS L ++    + +N+ +SNN  NNNDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MENG-HGGNLADKFSGLALNDKGNDSNNNSNSNN--NNNDS-LFQVMKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          +EENN LR EL KKIQELEK
Sbjct: 61 IEENNLLRTELHKKIQELEK 76

[Close]
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match: A0A067DX74_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-13
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG  G +LA+KFS L ++    + +N+ +SNN  NNNDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MENG-HGGNLADKFSGLALNDKGNDSNNNSNSNN--NNNDS-LFQVMKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          +EENN LR EL KKIQELEK
Sbjct: 61 IEENNLLRTELHKKIQELEK 76

[Close]
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match: A0A067DW00_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-13
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG  G +LA+KFS L ++    + +N+ +SNN  NNNDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MENG-HGGNLADKFSGLALNDKGNDSNNNSNSNN--NNNDS-LFQVMKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          +EENN LR EL KKIQELEK
Sbjct: 61 IEENNLLRTELHKKIQELEK 76

[Close]
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match: V4SR89_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10026951mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-13
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG  G +LA+KFS L ++    + +N+ +SNN  NNNDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MENG-HGGNLADKFSGLALNDKGNDSNNNSNSNN--NNNDS-LFQVMKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          +EENN LR EL KKIQELEK
Sbjct: 61 IEENNLLRTELHKKIQELEK 76

[Close]
BLAST of Cp4.1LG16g01030 vs. TAIR10
Match: AT5G08440.2 (AT5G08440.2 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          M+NG E R LAE+FS +G+  +     N +        NDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MDNGHEER-LAERFSGVGLGESSGSHENDVK-------NDS-LFQVIKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENN L+ ELQ++  EL K
Sbjct: 61 VEENNLLKAELQRRYLELAK 71

[Close]
BLAST of Cp4.1LG16g01030 vs. TAIR10
Match: AT5G23490.1 (AT5G23490.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG E R LAE+FS LG      E S+ L  N   N+N   LFQV+KAVEAAE TIK+Q
Sbjct: 1  MENGHEER-LAERFSGLGF-----EDSSLLPENEFKNDN---LFQVIKAVEAAETTIKEQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEEN+RL+ ELQ+   EL K
Sbjct: 61 VEENSRLKAELQRSALELAK 71

[Close]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: gi|778670317|ref|XP_011649438.1| (PREDICTED: uncharacterized protein LOC101216431 isoform X2 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-27
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGF+GRSLAEKFSELGVSA  AEQSNS   +NHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSNS---HNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKCV 83
          VEENNRLRIELQKKIQELEK V
Sbjct: 61 VEENNRLRIELQKKIQELEKYV 79

[Close]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: gi|700207103|gb|KGN62222.1| (hypothetical protein Csa_2G336690 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGF+GRSLAEKFSELGVSA  AEQSN   S+NHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSN---SHNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENNRLRIELQKKIQELEK
Sbjct: 61 VEENNRLRIELQKKIQELEK 77

[Close]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: gi|778670315|ref|XP_011649437.1| (PREDICTED: uncharacterized protein LOC101216431 isoform X1 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1 

Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGF+GRSLAEKFSELGVSA  AEQSN   S+NHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSN---SHNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENNRLRIELQKKIQELEK
Sbjct: 61 VEENNRLRIELQKKIQELEK 77

[Close]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: gi|659121873|ref|XP_008460855.1| (PREDICTED: uncharacterized protein LOC103499606 isoform X3 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 4  GFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 63
          GF+GRSLAEKFSELGVSA PAEQSNS   +NHGNN+DSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 2  GFDGRSLAEKFSELGVSATPAEQSNS---HNHGNNSDSNLFQVLKAVEAAEATIKQQVEE 61

Query: 64 NNRLRIELQKKIQELEKCV 83
          NNRLRIELQKKIQELEK V
Sbjct: 62 NNRLRIELQKKIQELEKYV 77

[Close]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: gi|659121871|ref|XP_008460854.1| (PREDICTED: uncharacterized protein LOC103499606 isoform X2 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-26
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 1 

Query: 4  GFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 63
          GF+GRSLAEKFSELGVSA PAEQSNS   +NHGNN+DSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 2  GFDGRSLAEKFSELGVSATPAEQSNS---HNHGNNSDSNLFQVLKAVEAAEATIKQQVEE 61

Query: 64 NNRLRIELQKKIQELEK 81
          NNRLRIELQKKIQELEK
Sbjct: 62 NNRLRIELQKKIQELEK 75

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g01030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g01030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN47_CUCSA1.2e-2791.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336690 PE=4 SV=1[more]
A0A067DK24_CITSI2.9e-1366.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1[more]
A0A067DX74_CITSI2.9e-1366.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1[more]
A0A067DW00_CITSI2.9e-1366.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1[more]
V4SR89_9ROSI2.9e-1366.25Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10026951mg PE=... [more]
BLAST of Cp4.1LG16g01030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08440.21.4e-1155.00 unknown protein[more]
AT5G23490.11.9e-1157.50 unknown protein[more]
BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778670317|ref|XP_011649438.1|1.0e-2790.24PREDICTED: uncharacterized protein LOC101216431 isoform X2 [Cucumis sativus][more]
gi|700207103|gb|KGN62222.1|1.8e-2791.25hypothetical protein Csa_2G336690 [Cucumis sativus][more]
gi|778670315|ref|XP_011649437.1|1.8e-2791.25PREDICTED: uncharacterized protein LOC101216431 isoform X1 [Cucumis sativus][more]
gi|659121873|ref|XP_008460855.1|3.3e-2689.87PREDICTED: uncharacterized protein LOC103499606 isoform X3 [Cucumis melo][more]
gi|659121871|ref|XP_008460854.1|7.4e-2690.91PREDICTED: uncharacterized protein LOC103499606 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g01030.1Cp4.1LG16g01030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 50..81
scor
NoneNo IPR availablePANTHERPTHR31149FAMILY NOT NAMEDcoord: 3..81
score: 1.4
NoneNo IPR availablePANTHERPTHR31149:SF6SUBFAMILY NOT NAMEDcoord: 3..81
score: 1.4
NoneNo IPR availableunknownSSF58022XRCC4, C-terminal oligomerization domaincoord: 44..83
score: 9.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g01030Csa2G336690Cucumber (Chinese Long) v2cpecuB271
Cp4.1LG16g01030MELO3C023212Melon (DHL92) v3.5.1cpemeB261
Cp4.1LG16g01030CSPI02G16300Wild cucumber (PI 183967)cpecpiB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g01030Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g01030Cucumber (Chinese Long) v3cpecucB0338
Cp4.1LG16g01030Wax gourdcpewgoB0359
Cp4.1LG16g01030Cucurbita pepo (Zucchini)cpecpeB320
Cp4.1LG16g01030Cucumber (Gy14) v1cgycpeB0606
Cp4.1LG16g01030Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g01030Cucurbita maxima (Rimu)cmacpeB623
Cp4.1LG16g01030Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g01030Cucurbita moschata (Rifu)cmocpeB573
Cp4.1LG16g01030Bottle gourd (USVL1VR-Ls)cpelsiB222
Cp4.1LG16g01030Watermelon (Charleston Gray)cpewcgB268
Cp4.1LG16g01030Watermelon (Charleston Gray)cpewcgB274
Cp4.1LG16g01030Watermelon (97103) v1cpewmB288
Cp4.1LG16g01030Watermelon (97103) v1cpewmB302
Cp4.1LG16g01030Melon (DHL92) v3.5.1cpemeB268
Cp4.1LG16g01030Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g01030Cucumber (Gy14) v2cgybcpeB199
Cp4.1LG16g01030Melon (DHL92) v3.6.1cpemedB305
Cp4.1LG16g01030Melon (DHL92) v3.6.1cpemedB312
Cp4.1LG16g01030Silver-seed gourdcarcpeB1010
Cp4.1LG16g01030Silver-seed gourdcarcpeB1472