CSPI02G16300 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G16300
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Gb\|AAF01580.1
Location	Chr2 : 15728935 .. 15730214 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTAATTCACTCACTCAGACTTTCGGAGAACTGAAGCTCAAAGGCGCAAGAGCCGACTTCACAACACTATGGATTTGATTGATTGATTGATTGTTTGATTGTTTGTTTGATTCAGGTACAAAATAGTGGTTTTGTTCCAGCTAAAGTTGAAGCTCAGCTGAGTTCGACTCTCTCCTTTCTCTGTCATCTTCATCTCTCTTTTATTTATTCGAAGAAATCATCAAAACCCCATCACTTCACCCATCTGTGAATCATTGCGGGACAGATAGAGAATTGGGTTTTAAGTTATATAGATCATTTTTCTTCTGCCCCCACTGGGTTAGGGTTTTCTTTTGGGTTTCACTTTTAACTCCATTTTCATACGTTCTTCTTTCTCTCACGACTGCTTCTGAGTTATTTAAATGTCCGAAAGAGGGAGGTGTCAGACCTGCGACCCAATTCTGCTGCTGAATTTAACGCCAATCTGAAACCACATAACCATTCTGGTTCGGATCAGTCGTGTTTCGGTTGTTTTCAGCTGAATTTGAGCTAGAATTAGAAGATGGAAAATGGGTTTGACGGGAGATCATTGGCTGAAAAATTCTCTGAGTTGGGCGTCAGTGCTACTTCAGCAGAGCAGTCTAATTCCCACAATCATGGTAACAACAACGATAGCAATTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCTGAGGCTACTATTAAGCAACAGGTGCTACGAATTTTCACTCCTCTCTCTCATTTTCTGTCCCTCAGCTTAAAAAACCAATGCTATTCGTCCGATGATTTCATCATCAAATTTAGTATCACTGTTGCTTGATCCCAATATCATACTTCTTCCATTCTTTCTTTCTAAAATTTATTTCATGTTTTCTATTTTTGCAAAATGCGTACTGTCAATTGAACATTACTTTCTTCATTGAGAACGTGGTTGGAATGCAAGGCTCGAATCCTTTCCTTTCCTGTTCACCTTTTTTTTTGGTACGATGAGATATGGGGACTCGCAATCTGATATGGACTCACCAAACAACCTCCTCCTAGGGGTATTTAAATACTCTTAGGTGGAGGAAAATACTCTTAGATTATTATGGGCTATGATTTGACTAGATAGTTTCTACAGAAAAAGCTGTGTATGTCATAGAAAGTTTCTATATATTCAATGTTACATGCTGATATGAGTGTATTTAAATACTCCTAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATATGTAAGTACTACAAGTTGA

mRNA sequence

ATGGAAAATGGGTTTGACGGGAGATCATTGGCTGAAAAATTCTCTGAGTTGGGCGTCAGTGCTACTTCAGCAGAGCAGTCTAATTCCCACAATCATGGTAACAACAACGATAGCAATTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCTGAGGCTACTATTAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATATGTAAGTACTACAAGTTGA

Coding sequence (CDS)

ATGGAAAATGGGTTTGACGGGAGATCATTGGCTGAAAAATTCTCTGAGTTGGGCGTCAGTGCTACTTCAGCAGAGCAGTCTAATTCCCACAATCATGGTAACAACAACGATAGCAATTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCTGAGGCTACTATTAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATATGTAAGTACTACAAGTTGA

Homology

[Close]

BLAST of CSPI02G16300 vs. TrEMBL
Match: A0A0A0LN47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336690 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-33
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60

Query: 61 NNRLRIELQKKIQELEKY 79
          NNRLRIELQKKIQELEKY
Sbjct: 61 NNRLRIELQKKIQELEKY 78

[Close]

BLAST of CSPI02G16300 vs. TrEMBL
Match: A0A072VM45_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g077190 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNH---------GNNNDSNLFQVLKAVEAAE 60
          MENG+DG+ LA+KFS LG++  + +Q  +  H          N N+ NLFQV+KAVEAAE
Sbjct: 1  MENGYDGK-LADKFSGLGINNQNGQQQQTQQHVHDDHQPDNNNTNNDNLFQVMKAVEAAE 60

Query: 61 ATIKQQVEENNRLRIELQKKIQELEKY 79
          ATIKQQVEENNRLR EL  KIQELEKY
Sbjct: 61 ATIKQQVEENNRLRSELLGKIQELEKY 86

[Close]

BLAST of CSPI02G16300 vs. TrEMBL
Match: A0A072VNA2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_1g077190 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNH---------GNNNDSNLFQVLKAVEAAE 60
          MENG+DG+ LA+KFS LG++  + +Q  +  H          N N+ NLFQV+KAVEAAE
Sbjct: 1  MENGYDGK-LADKFSGLGINNQNGQQQQTQQHVHDDHQPDNNNTNNDNLFQVMKAVEAAE 60

Query: 61 ATIKQQVEENNRLRIELQKKIQELEKY 79
          ATIKQQVEENNRLR EL  KIQELEKY
Sbjct: 61 ATIKQQVEENNRLRSELLGKIQELEKY 86

[Close]

BLAST of CSPI02G16300 vs. TrEMBL
Match: A0A067DW00_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-15
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENG  G +LA+KFS L ++    + +N+ N  NNN+ +LFQV+KAVEAAEATIKQQ+EE
Sbjct: 1  MENGHGG-NLADKFSGLALNDKGNDSNNNSNSNNNNNDSLFQVMKAVEAAEATIKQQIEE 60

Query: 61 NNRLRIELQKKIQELEKY 79
          NN LR EL KKIQELEKY
Sbjct: 61 NNLLRTELHKKIQELEKY 77

[Close]

BLAST of CSPI02G16300 vs. TrEMBL
Match: A0A067DX74_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-15
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENG  G +LA+KFS L ++    + +N+ N  NNN+ +LFQV+KAVEAAEATIKQQ+EE
Sbjct: 1  MENGHGG-NLADKFSGLALNDKGNDSNNNSNSNNNNNDSLFQVMKAVEAAEATIKQQIEE 60

Query: 61 NNRLRIELQKKIQELEKY 79
          NN LR EL KKIQELEKY
Sbjct: 61 NNLLRTELHKKIQELEKY 77

[Close]

BLAST of CSPI02G16300 vs. TAIR10
Match: AT5G08440.2 (AT5G08440.2 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-14
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          M+NG + R LAE+FS +G+     E S SH +   NDS LFQV+KAVEAAEATIKQQVEE
Sbjct: 1  MDNGHEER-LAERFSGVGLG----ESSGSHENDVKNDS-LFQVIKAVEAAEATIKQQVEE 60

Query: 61 NNRLRIELQKKIQELEKYVSTTS 84
          NN L+ ELQ++  EL KY S  S
Sbjct: 61 NNLLKAELQRRYLELAKYKSGES 77

[Close]

BLAST of CSPI02G16300 vs. TAIR10
Match: AT5G23490.1 (AT5G23490.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 9.7e-13
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENG + R LAE+FS LG   +S    N   +      NLFQV+KAVEAAE TIK+QVEE
Sbjct: 1  MENGHEER-LAERFSGLGFEDSSLLPENEFKN-----DNLFQVIKAVEAAETTIKEQVEE 60

Query: 61 NNRLRIELQKKIQELEKYVSTTS 84
          N+RL+ ELQ+   EL KY S  S
Sbjct: 61 NSRLKAELQRSALELAKYKSDES 77

[Close]

BLAST of CSPI02G16300 vs. NCBI nr
Match: gi|778670317|ref|XP_011649438.1| (PREDICTED: uncharacterized protein LOC101216431 isoform X2 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60

Query: 61 NNRLRIELQKKIQELEKYV 80
          NNRLRIELQKKIQELEKYV
Sbjct: 61 NNRLRIELQKKIQELEKYV 79

[Close]

BLAST of CSPI02G16300 vs. NCBI nr
Match: gi|700207103|gb|KGN62222.1| (hypothetical protein Csa_2G336690 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60

Query: 61 NNRLRIELQKKIQELEKY 79
          NNRLRIELQKKIQELEKY
Sbjct: 61 NNRLRIELQKKIQELEKY 78

[Close]

BLAST of CSPI02G16300 vs. NCBI nr
Match: gi|778670315|ref|XP_011649437.1| (PREDICTED: uncharacterized protein LOC101216431 isoform X1 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60
          MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE
Sbjct: 1  MENGFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEE 60

Query: 61 NNRLRIELQKKIQELEKY 79
          NNRLRIELQKKIQELEKY
Sbjct: 61 NNRLRIELQKKIQELEKY 78

[Close]

BLAST of CSPI02G16300 vs. NCBI nr
Match: gi|659121873|ref|XP_008460855.1| (PREDICTED: uncharacterized protein LOC103499606 isoform X3 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-30
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 4  GFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEENNR 63
          GFDGRSLAEKFSELGVSAT AEQSNSHNHGNN+DSNLFQVLKAVEAAEATIKQQVEENNR
Sbjct: 2  GFDGRSLAEKFSELGVSATPAEQSNSHNHGNNSDSNLFQVLKAVEAAEATIKQQVEENNR 61

Query: 64 LRIELQKKIQELEKYV 80
          LRIELQKKIQELEKYV
Sbjct: 62 LRIELQKKIQELEKYV 77

[Close]

BLAST of CSPI02G16300 vs. NCBI nr
Match: gi|659121871|ref|XP_008460854.1| (PREDICTED: uncharacterized protein LOC103499606 isoform X2 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1


Query: 4  GFDGRSLAEKFSELGVSATSAEQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEENNR 63
          GFDGRSLAEKFSELGVSAT AEQSNSHNHGNN+DSNLFQVLKAVEAAEATIKQQVEENNR
Sbjct: 2  GFDGRSLAEKFSELGVSATPAEQSNSHNHGNNSDSNLFQVLKAVEAAEATIKQQVEENNR 61

Query: 64 LRIELQKKIQELEKY 79
          LRIELQKKIQELEKY
Sbjct: 62 LRIELQKKIQELEKY 76

The following BLAST results are available for this feature:

BLAST of CSPI02G16300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G16300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN47_CUCSA	7.2e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336690 PE=4 SV=1	[more]
A0A072VM45_MEDTR	1.0e-15	60.92	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g077190 PE=4 SV=1	[more]
A0A072VNA2_MEDTR	1.0e-15	60.92	Uncharacterized protein OS=Medicago truncatula GN=MTR_1g077190 PE=4 SV=1	[more]
A0A067DW00_CITSI	2.3e-15	64.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1	[more]
A0A067DX74_CITSI	2.3e-15	64.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006014mg PE=4 SV=1	[more]

BLAST of CSPI02G16300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08440.2	3.0e-14	59.04	unknown protein	[more]
AT5G23490.1	9.7e-13	54.22	unknown protein	[more]

BLAST of CSPI02G16300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778670317\|ref\|XP_011649438.1\|	3.6e-33	100.00	PREDICTED: uncharacterized protein LOC101216431 isoform X2 [Cucumis sativus]	[more]
gi\|700207103\|gb\|KGN62222.1\|	1.0e-32	100.00	hypothetical protein Csa_2G336690 [Cucumis sativus]	[more]
gi\|778670315\|ref\|XP_011649437.1\|	1.0e-32	100.00	PREDICTED: uncharacterized protein LOC101216431 isoform X1 [Cucumis sativus]	[more]
gi\|659121873\|ref\|XP_008460855.1\|	3.7e-30	97.37	PREDICTED: uncharacterized protein LOC103499606 isoform X3 [Cucumis melo]	[more]
gi\|659121871\|ref\|XP_008460854.1\|	1.4e-29	97.33	PREDICTED: uncharacterized protein LOC103499606 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G16300.1	CSPI02G16300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 47..81 scor
None	No IPR available	PANTHER	PTHR31149	FAMILY NOT NAMED	coord: 2..78 score: 2.3
None	No IPR available	PANTHER	PTHR31149:SF6	SUBFAMILY NOT NAMED	coord: 2..78 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G16300	MELO3C023212	Melon (DHL92) v3.5.1	cpimeB101
CSPI02G16300	Cp4.1LG16g01030	Cucurbita pepo (Zucchini)	cpecpiB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G16300	Melon (DHL92) v3.6.1	cpimedB093
CSPI02G16300	Cucumber (Gy14) v2	cgybcpiB058
CSPI02G16300	Cucumber (Gy14) v2	cgybcpiB064
CSPI02G16300	Silver-seed gourd	carcpiB0754
CSPI02G16300	Silver-seed gourd	carcpiB1094
CSPI02G16300	Cucumber (Chinese Long) v3	cpicucB082
CSPI02G16300	Watermelon (97103) v2	cpiwmbB125
CSPI02G16300	Wax gourd	cpiwgoB173
CSPI02G16300	Cucumber (Gy14) v1	cgycpiB339
CSPI02G16300	Cucurbita maxima (Rimu)	cmacpiB550
CSPI02G16300	Cucurbita maxima (Rimu)	cmacpiB592
CSPI02G16300	Cucurbita moschata (Rifu)	cmocpiB540
CSPI02G16300	Cucurbita moschata (Rifu)	cmocpiB581
CSPI02G16300	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G16300	Watermelon (Charleston Gray)	cpiwcgB133
CSPI02G16300	Watermelon (97103) v1	cpiwmB146
CSPI02G16300	Cucurbita pepo (Zucchini)	cpecpiB717
CSPI02G16300	Bottle gourd (USVL1VR-Ls)	cpilsiB093