Cp4.1LG16g00350 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g00350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	SWIB complex BAF60b domain-containing protein, putative, expressed
Location	Cp4.1LG16 : 405883 .. 415548 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCTTCGTCCCCAATCTCCCGTCTGTTCTTCACGCAAAGTCTTTTCCTGTTCGAAGCCAAAGCCACACACCACACGCCACGGATAGTGTGCCCTCAACTCCAAATCCTAACCCTCCTATCATCGATTGTTCTTCCTTCAATCTGCGAGGTTTTGCTCTGCTTCGAATAAGATTGTGGATTTCAACAATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAGGATGGAGATAGTGAAGACGGAGATAACGACGACCACGATGATGAAAAGGGTAAAACGGGGTGAGTGTTGATTGATGAAACTTCGCAATTATAAAGATTACGGATTTCAGTTTAGTGTTGGGGGTTTAAACGGCTCTAATGTGTAGCTTAGTAATTTTTGTCCATATACGGTGCAAAAAGACAGTGAATCGATTCGTTTTCATACTGAAAATAGTGGCAAGATTGTAAAAATCATCAACGCTGGAGCTTCTATCCTCAATCGATCGCAACATTGTCGATTGTAATATCTTTTGGTATTGCGTTGATTAATTCTTTATTTTAGTTCTTAGAATTAAGCATTTTTTTGTTGTCCCATGACGAAATCAGTGTTCTCAGCTACTCAGGGGAAAGCCTTCTCTTAAAAATCGTATGGATTTTGCATGAATTTTTATCTGAAAGTCTGATAAACTATGCAGATTATGGAAAGAAGTGTTCTAGCAACAAGCTAGCTAATTTGATCATTGTAAAACAATGAAAATATGTTTCCAAACCTCGATTGATGACCTCCATTTGCCCAACTAGTTTGGGAAGTCAAGGGCAATTGGGAGGGAGTGTTAGACTTATTGAATGTCTGGCTTACATGCAATTACAATTAATCCTATGTTGGGGAGAATTTTCACCTTTTTCTTTCATTAATCCTATAGCAGGAACTTTTGGGAGACCTTGCTTCAGGGTTTTGAATTCCAGGGCTAAAAACAATGTTCTGAATCTACTTTGTGGCCATGGTCTAAGAGGGAGTGAAAAAGTTTTATGGATCAACGCTGTCGAATCTGTGGTTTGGGCAGTTTGTTTGAAGGGAATCACATTCTAATGAGAACTAATGTGCTTCTTGGGAGGAAAAACTTGAAATATTTTAGTACTCACTGCTTCATGGATGTTCTGAAATTAATTCTTGTTGGGCTTTTTTGTTTTTTTGTTTTGTAATTCTCTGATCAGATGGTGTTTTTAGCTTTTGCTTATGTTTTCTTGGTTTGGGTAGTTTCAGGTTGTAACTTTTCATGCATATGAAACGTTAAAAGACACTTGAAATTTGTATTAGAGACCAACTTTGATGATTGAGTTAATTGTTCTTTGTGATGCAGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTACATCTAGAAAGTAAATTTTGAACCCCTTTTATTCAATCTTCTTAATGTACTAATGAAGTCATGTGTTGTCTTTTTCATTCCTTCTAATGCCATAATTGCGATCTTTTCTCAGGTTGTGAAGCAACTGTGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGGTGTGCTTTTATAGCTTTAATTTGTGGCTAAAATTATGCTTCTGTTTTCTCAGATGTTTGGACTTACCATTGCTCTTAATAATAGCTATTTTTTAATGTCATCTGGCTTCTATGGAACTTTTGAGTGCTATTTCAATATTGACTCTTGAATTTTCTTTTCTTCAATTTATATTCCTTTTTTTTCTTTTAAATCGTAATAAAGGACACTTTTTGTTTGGATGCTCCTGATTTGGAGGGGTTTCAAATCGTAACTGATTTCCAATGAATTCTGTCGTCTGTGATCACAAGAAAGAGAATGATTAAGTGTTTTCAAATCTTGTTTTTTACATAAAAAAGAGAAAAATTTGCCATACTAAAATTGAGATTAGTTACTTGCATGACCTTGTGATATTTGAATTTTCTATTAATAATTTATAACTAAAAGCCTATATCAGTGAACTTCTTACTTTCTTTTATTTTCCAGTTACTATCCAAACACAAAATTGTAATTACATTCATTTGAAATCTTTCTCGTTCCAAACAAGATAAAAGTTTAAAATCATTTCTTGAACTTCAAATCACGTGATTTGAAATCATTTCTTGAACTTTCTTGATCCCAAACAGAGGGAGTTTTGGTCTCCATTCATATTCTTTAATGGCTAATGCTTGCCACTGCAAACCCTGAACTTTATTCTGATGAAGCTGAGCAACAAACCTTATTGATCCTTTTTTCTTAATAATTTTTTTTCCTTTCCTGGATACAGTTATTCCGGCCAAATCAAGTCAGAAAGAAAAGCAACAAAAGGAGAAGCAGGAAAAGGAGAAGCAGCCAAAGGAGAAGCCACAAAAGAAGCGGCAGAAGCAAGGGAAAGAAGAAGGTAGATAGCGAAAATAGTTGTCTTTGTTTGAAATTCTATGACTGCGTACTCTGTTAATGGCAAGAAACCCCTGTAGGGGTACTATAACAAGACTTCTAAAATCATTAGTAGGATAAAATCTGAATTTTTTAGATAAAGTATACCAAGAAGCCGCATAAAGTTGAATCACCTTGGATCTCTCTTCCTTTATCTTTGAAGATCCATTGGTTTCTTTCTATATATGCCCCCAAAAAGTTGATTAAGTCCATTAATCCACAATAATTTAGCACATCTTTTCATCCCTTGGCCAATCTGTGCAATTGTAGCTTTAACTCCAATATTGAAAATCCAGGAAAAGCCAAGGTTGAAAACGCGATCCCAGATTTTACCCATGAGTAGGGGTGATCATCGATTGGTTGGCATCAATTTTGGGTTCAAATTGGTGCTGACCACCAACATGCTAGTTTTCGTCAGTTGGTTTTGTAGGGGTTGGCGGTGTCAACCAGCGTTTTTGTTGGTTTTGGTTGATTTTGCAACTCTGATGAACTAAATAGAAAATAATGCGACAAACTAGACGAAAAGAATGTGAAAAACGTAGAAGAAAAGGAAAAAAGGGAGAAGAAAGGAAGAGGAAAAGAAAAAATAAGGGAAAAGAAAGAAGGAAGGAGAGATGGAAAAAAGGAAAATACAAAATAAAGAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTGTAATAATATCTTCCCTTGGAAGAGGAAGACTTGGAGGCTGCTGCAGCAGCCTTTTATGCACGCCAAGTTTAATTACTATTATTATTTTTAGTTGGTTGGTTTGGTTGGTTTTATCCCTTCGTGGGCTTGCTGACTGACCACTTGCCAACTGATCTCGACCGAAAAGCCCATAGCCAGACCGACTGGATGAAAAGCCGGGGTAGAAGCACAAAAGGAGAGGCAAAGTCAGCCGGTCTCAGTCTGTTTCCATGGAGTTCGGATTTTCGTGCTCACCCCTGGCTGTAAGAGAGCTATGTGAGAGAGAAGAAAGTAAGATTTTTATTCTTCTTTCTTTCATAAGCTGATCCTACTTGAACGAATTGCTAGATAGGGTGGCATTTTCTGCAATTTTATGCTAAATTTAGCCCCTCCGAGTATACTAACCTGACCAAAATATTCACTTTACTGCTGTGTGAGAGAAAACAAAGTAAGGGTTTTATTCTTCTTTCATGGATGAGCATCCAATTTGGATGAGTTGCTAGATAGGATCACCTGTTTTGCACTTTTTATGCTAAATTTAGCCCTTCCAAGTACACTAACCTGACCAAACTATTTACCTTTTTGGGGCATTAAGGCTTTCATATAGCTTCAATAAAATGTGTTGGAAGAGGACCTTGTGTCAATACATAAAACAAAGGATTCATTGGAAAACTTTTAGGCCTCCGATATTGAGAGCATATGAGATGAGGGTAAAGGAAAATGTATCTTAAAGTTAGCTAGAATAGACTGTGTTTATATATATATATATATATATATATAGGTTAAGGTTGTAAGATTGATGTAAGAAGGTTCTTGTGGGTTATTTGTAGGGGAGAGAAGATGACCTTCTCAAATTGGCTGCAAGTCTTGTATGGTGCTAGGTTGACCTCTACCCTTTTAAATAAGAAGAATCTTAAATGTTGATACCTATTACAAACCTACCGTATCCAAGCCTTCATGATGAGTCTTCCTGCAGCTACAATTAATTCTAATGAAGATTCTCAAAGTTGGTCTCTTAGATTCTTGGATGGGTTTTCTGTCAAATCTTGGACTTGTCATTTGGCTTTATCATCTCATTTGGACAAAGATATATTTTCACCCCCGTGGAAATTGGAAGTCAAAAAGCCCAAAGAAAACTAATACTGTTGTGGATTATGCTCAATGATAATCTTTAGCTCCTCCGAGGTTTTGCAAAGAAAGCTTCCTCTCCAATGTCTATGGCCATCGGTTTGTTCACCTTNCCTTTTTTTTTTTTTTTTTTTTTTGCAGCGGGGGATTATCTAAATCACATTTTCTTTGAATGTTCATACTCTTGTTCATGCTGGCTCAAGCTTTTTTTGATATTCAATGTCCAGTGGGTTTTCTCTAACATAATGAACGAAAAGGTTTCTCAACCTCTTGTTGGTCCCCTTCTGAATCTTAAGGTGATGTTCCTATGGCTTAATGCGGTCAAAAGGCATTCTACCACAATTATGGTTGGAGAGGAATCGGAGAATTTTTCAAAATCAGCGCCTTTCTTGGTTTGGCTGATTTGAAGCAGCATGATTAAAGTCTTCTTCTTGGTGTTCTCTCTTAAAGATTTTTGTTGGGTGTTCTTTACAAGATATTTGTCTTGATTGAAATGCCTTTATTTCTCCTTTATATAGTTTTTTTCTTTCTCTTTACTGTTTTATCCTGCATAGGGGGATGTCTACCTTCAGAGTCCTTGCCCCTCCAAAAGGCTTTTCATGCAGCTCTTTCTTTCATTGTTTGGCTAGCTCCTTTCAGTCAAGTGACTATCTTTCCCTTTTTGTGCAATTATCAATTAGGTCTCATTCTTTTAGACATTATGTATGCCCTTGTACATTCTTTCATTTTTCTTAGTGAGAGCTCAGTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAATAACAAACAAAATATTTCCCTCTGTATGGAAGGTAAAATTTCCAAGAAGGTCAAGTTTTTGGTGTGGCAAGTTATGCATGGAACTTGGAAATCTTAACACCTTGGATCCAGTAACAGTTAGGGTGTCCTCTTTGGTTGGGCTGCTTTGTTGTATTTTTTTTTTGCAGAAAGTTTCAAAGGACCCTGATCATTTAATCTGAAGATGTGATTTCACCAGGGCTATGTAGCTGTTTATTTGAGATTTAGCTTTAGCTTTTCCAGGAATGTTTGTGAAGCTTCTTCTTACTCACCTTTCTGTGAGAAAGGATTATATTTTTGGCAGGCTGGGGTTGTTTCATTTTGTGGAGTCTTTGGTGGGAGAGAAATAATCGAATCTTTCAAGAAATGAGAGATCTTATAGTGAAGTTTGGCCCCTTGAAGTCTTATTTTACTAGATTGAAGCTCCTTTTTGTAGTTTGTTGTCTAGTTTCACCTTTTTTGTGGGTTTTTTATGTATGTCCTTGTATTTTTTTCACTTTTTCTTAACGAAGGTTCGGTGTATCCTTTAATTAATTGCCCAACGTAATTGCTTCAGAACGAATTAGAAAAGATGTAAAATTTTAAATTATACTGTTTCCCGTTTCAGCTGACCGAAGGTTCTACTATACTAATATCTAACAAACCTTCTTTCCAGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGTAGTTGGCCTTTAGAAAGAATGAAAGATACTTTGATAGTATAGTAACAGTATGTGCTTATGAGTCGGCGGATAGCTTAGCTATTATTTGGGAAATTAGAGAGAATATGTGAATCTTGGAAAACATGCTTGATTTTAGTATTTTTGTAGGTGTTCAAAGCATATGCTAGTATTCATCCATCATTCATGGCTTGTGCTTTCACTTAGGTGATCAACTTGGTTGTTTCTTCATCGCATTAATCAATTTTTTCTCATTGTATTTTGACTTGCATGTTCTTTTATCATGCATTATCGCTCCAAACCAATGTGATTTATGCCCAGAATATATATCTATCTATCTCTCTATATATATTGCTCTTACCTAGCCATTGTTTTCATGCTATTTAGTTATATATTCCATCCTCTATGTGTAGCATATAATTGTACCTATTTTTTTAGAAGTTTTTAGAATATGTGGATTCTCTTAGCTGACATTGTTTACATACCCCAGCTCTTGATCTTGGGATAGTTTTTGTTTTCCTTGTTTTTGTGTATGGCTTGAGCTTTTAGAAGCGTAACTTATTATAATGGAATAAATGTTAAAAGTTTCTTTTGGACCTTTCATTTCTAAAGATTATCGTTATCATTGTTTAAAAATTCTTGTTCCTTTTCATTTTATGAGTGAAAAATTCATATTGGTAGAATCTGGAAAGTTCTAATAGTTGAGTGAAAAGTTACGTGAGGAACACCCAGCCCAGGAAAGCTTTCAAGAATTTCTCCAATTTGAATTAATAAAAATCATTGCTCACAAGAGGCTAGAGGGAGTAAATCAATAGGAACTCAAGTTCTGGCTCTACTCTCACTCTTTCTGCCGTTCCCTCCTTTCTCTCGTTCCGATTGGTAGTCATCATAGGCAATACTTTTGAGGAATCTTTTCTTATTTGAATATGATCTTAATGGTCTATAAGTAGGTCAACTTATGGTGATTTCACGTAGTATTAAAGCTGAAATCTTGAATTCAAATCTGTCTGTTTGGGGTTTGCAAGTTAAATTCGATATCCAAGGCTACATGTTAGGCATAAGGTTGAGGATATTCACATATATTGAATTGATTAGTACTGTAATACAATCATTTTAGCTTGGATTTAGTGCTCTCATTTATTGGCAATCCTATCCCATTTCTTCATTATTTTGGATTCCACTTGTTTAGAAGGTAGCCGAATTCCTTGGAAGGTGGGAAATGCCTCGTTTTACTTGAGAGGTTAGACGTGCCTTTATTCACTGTATTTTTCCACATACCATCTCTCTTTTTATGTCGCCTTGCACACCAGTCTATCATGCTCAATCTAGTGAATTAGTTTGTTGTAATATCTAAGTCCACCGCTAGCACATATTGTCCTTTTTTACCTTTTTCTTTGGGGCTTCCCCTCAAAGTTTTTAAAACGTCTATTAGGGAGAGATTTCCACCCCATTATAAAGAAGGTTTCCACCGCTAGCATATATTGTCCTCTTTGGCCTTTTCCTTTGGGGCTTCCCCTCAAGTTTTTAAAACGTCTATTAGGAAGAGATTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCTCCAACCGATGTGGAATCTCACATTTGTAGTCTCCAAGAATTCATTTTTGATAGTGGCAATATGGTTACTTTTCCAAAAGAAGGAAAAGAAAACCCCAGCTTTTCTGTTAGAATCCTAGCACTATATGGAGGCACTAAGAATTCCTTGATGGAGTAAATAAGAGTAGTTATTATGGGTGCCCATTTTTTGTGTGTTTGCGCTCGTGCAAGAAAAATGTTGATAATGAACATAGAAATTATGTTATTTTGACGATGCATCATTTAACATCTGAAAATGTTTCTTAATTGTTCTTGAAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAGTGAGTTTCTCCTACACATTGTCTTTGAATGATGCAAGAGAATCTGGAATTTTGCTTGAGATAGTTTTAATCGCCTCTTCTTTCTGTTCTATTCTCTGGAATTCACCAACAAGGCAATGGAAATCTATTTTATTGACCTTGTGTTATCTCCTCTTTGCTTGCTGGTATGTTGCAAAATCCTTCAGAATTATTGAACTAACGATTAATAATTCTTCTATGCTTCCTTACCTTTCAAGTAGCTGTTACATTTACAAAAAAAAAGGATGAGAATTTGCCTGCATGTTGGCCGAACTACATTTCTTTTGTTACTATTCATAGTTTTGTTTTGTTCTTTCTCTCGTTCTTCTCTCTCTAGCACTTCCATGAAAGGTTCTTGACTGAAGCATGTGGTAAAGCATGAGAAAGGAAAACAAAAAAATTTCTCCTGATATTAAGCTTATTGTCTGTTATATACTGTGCTTCCTATCCTATCATGTTTCACCACAACTAGGCAACATTCGCGAAGAAAGACGACATGACACTATAAAATGCATGTTGGGTCGAGTAGACAGCGACTCGAGACCCTATAAGCAGGATTGCATGGAGATTATTTGTTTATTTGTGTATTTTTTGTTTATATTTTCTACTGAGATTCTGATTATTGTTTAATTGGTTATGCCCCTAAGGACATATTCTTCATTGTTTAAGTGGGTATTGGTTCGTTTTTGAAAAAGAACGGTTGTAATAGTTTGATCTTCTTATCTATTATCTGTGGAAATGATTAGGTTTGCTCTTAAAGGATTTCGAACCATGGAAAGAATTGATAAAGTTTTTATTTAAATGCTCGAGAGGAGATGGAAAAGTTGATCTAACTGCTATAAAAATCATGGTGACAAAATGATTTTCTTTTGCTCTTAATATTGATTACTATCTTTAAATTTTGGCAATTAATTTATTATGGCTATTTGTGATGGTAACTGCTCACTTTGCATATTCATTACCAATCTTGTTATTTAAATTAAATTGGCAGTTTGAAATTATTATTGTTAATTTCTTGATTATTTTGAGTTGAATTTATTTGCATGAATTCTTCATCTATATTCATTACCATCTCTTTAAACTCGTTTGGGAGATATACGATCTCATTCATGACTATCTTCGTGCCTCCTTTGTAGGCAAACATTGCGCCGAGCTCACCCAACTAATATTG

mRNA sequence

TCCTTCTTCGTCCCCAATCTCCCGTCTGTTCTTCACGCAAAGTCTTTTCCTGTTCGAAGCCAAAGCCACACACCACACGCCACGGATAGTGTGCCCTCAACTCCAAATCCTAACCCTCCTATCATCGATTGTTCTTCCTTCAATCTGCGAGGTTTTGCTCTGCTTCGAATAAGATTGTGGATTTCAACAATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAGGATGGAGATAGTGAAGACGGAGATAACGACGACCACGATGATGAAAAGGGTAAAACGGGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTGTGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGTTATTCCGGCCAAATCAAGTCAGAAAGAAAAGCAACAAAAGGAGAAGCAGGAAAAGGAGAAGCAGCCAAAGGAGAAGCCACAAAAGAAGCGGCAGAAGCAAGGGAAAGAAGAAGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAGCAAACATTGCGCCGAGCTCACCCAACTAATATTG

Coding sequence (CDS)

ATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAGGATGGAGATAGTGAAGACGGAGATAACGACGACCACGATGATGAAAAGGGTAAAACGGGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTGTGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGTTATTCCGGCCAAATCAAGTCAGAAAGAAAAGCAACAAAAGGAGAAGCAGGAAAAGGAGAAGCAGCCAAAGGAGAAGCCACAAAAGAAGCGGCAGAAGCAAGGGAAAGAAGAAGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAG

Protein sequence

MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHEREEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK

Homology

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BLAST of Cp4.1LG16g00350 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11
Identity = 55/182 (30.22%), Postives = 97/182 (53.30%), Query Frame = 1


Query: 162 NRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKE 221
           +R+ +   +  + L     +++    K L+  I         P++    EKQ   ++ K 
Sbjct: 16  DRQTVSAKQVRQLLEERRKVDLSAHKKDLNALILKCFDETAAPSEKESLEKQAPARKTKG 75

Query: 222 KQPKE-------KPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGT 281
           K+  E       KP K+ +K  ++ED ++  + ++ Q    +    P++LS  L  FLG 
Sbjct: 76  KRATENGTEEGKKPAKRTRK--RKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGL 135

Query: 282 GESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHF 337
            +  LSR   VK++W+YIK ++LQDP+DKR ++CD+KLK +F+V++ H FT++K L    
Sbjct: 136 EQ--LSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLM 193

[Close]

BLAST of Cp4.1LG16g00350 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-07
Identity = 68/223 (30.49%), Postives = 115/223 (51.57%), Query Frame = 1


Query: 5   SELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHEREEE 64
           S +ID L   L D DL   TT  VR  L+E + +D+  + + I + +   L    ER   
Sbjct: 8   STMIDIL---LSDMDLETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLVKERPRF 67

Query: 65  EGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGFSKLC 124
           E     E+  +E+    ++  +E   S+    ++ +D + K     + KK+G    S + 
Sbjct: 68  ERS--LEDLLKENATLAIELTKEITVSKRSSGEEKNDSETK--GTHVEKKKGTVSKSPIS 127

Query: 125 S----LSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 184
           +    LS  L   +G  E+ RTEVV++LW +I+ +NLQ+P+N++ ILCDE L+ L    S
Sbjct: 128 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS 187

Query: 185 INMFQMNKALSKHIW-PLESNDVIPAKSSQKEKQQKEKQEKEK 223
            NMF+M+K L+ H+  P + +D  P     + K++    + E+
Sbjct: 188 TNMFEMHKILASHMTEPKKISDCPPLIQEVRRKEKPIVSDSEQ 222

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BLAST of Cp4.1LG16g00350 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-06
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 1


Query: 28  VRRKLEEYFGVDLSDKKRFIREQV-DLFLQTEHEREEEEGGGDCEEADQEDGDENLKTEE 87
           VR+ L+  + V+L  +++ I E + + F   +          D    DQE      K EE
Sbjct: 28  VRKALQILYSVNLDSQRKLINELILERFGDIQENPRVLIPKNDLISRDQELSLRLQKEEE 87

Query: 88  EDGDSEDGDNDDHDDEKGKTGS-NKLAKKRGGGGFSKLCS-----LSPQLQEFIGVPEMA 147
               S           KGK+ S +K  KK+     S   S     LS  LQ+F+G  E+ 
Sbjct: 88  RPLRSTR-------KRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELP 147

Query: 148 RTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESN 207
           RT+VVK +W +I+ ++LQ+P +RR ILCDE ++ +F    + MF MNK L+KH++    +
Sbjct: 148 RTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFSMNKLLTKHLF--NPD 207

Query: 208 DVIPAKSSQKEKQQKE-KQEKEKQP 225
           +++  +  QK+  +KE K E E  P
Sbjct: 208 EIVKHEEEQKQTPEKEIKLENESLP 222

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BLAST of Cp4.1LG16g00350 vs. Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 8.7e-06
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 269 VTFLGTGE-SALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVS 328
           V+F+  G+ S LS+ DV   + DYIK+ NL+DP  K +V+CD+ L +LF  +    F + 
Sbjct: 328 VSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEML 387

Query: 329 KLLATH 334
           KLL +H
Sbjct: 388 KLLESH 393

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BLAST of Cp4.1LG16g00350 vs. TrEMBL
Match: A0A0A0LJW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295440 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 9.7e-145
Identity = 287/338 (84.91%), Postives = 304/338 (89.94%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLR+FLR+SDLN TTTAIVRRKLEE FG+DLSDKK FIREQVDLFLQTEHE
Sbjct: 1   MVSDSELISRLRDFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKLFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGF 120
           +  +EG   CEE  QEDGDENLK E EDGDSEDGDND+ DDEKGKT S K+ K+  GGGF
Sbjct: 61  KAVQEGYAHCEEVHQEDGDENLKMETEDGDSEDGDNDNEDDEKGKTSSEKVKKR--GGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           +KLCSLSPQLQEFIG PEMARTEVVKQLWNHIR NNLQDPSNRRNILCDE LKALF V+S
Sbjct: 121 TKLCSLSPQLQEFIGAPEMARTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGVNS 180

Query: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKEED 240
           INMFQMNKALSKHIWPLESNDVIPAKSSQKEK Q     KEKQPKEKPQKKRQKQGKEED
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKPQ-----KEKQPKEKPQKKRQKQGKEED 240

Query: 241 SDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           SDDSARE+KRQKKGKSGFLAPL LS+ALV FLGTGE AL RSDVVKRMWDYIKQNNLQDP
Sbjct: 241 SDDSAREDKRQKKGKSGFLAPLPLSNALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDP 300

Query: 301 SDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           SDKRR+ICDE+LKELFDV+SF+GFTVSKLLATHF+K K
Sbjct: 301 SDKRRIICDERLKELFDVDSFNGFTVSKLLATHFIKMK 331

[Close]

BLAST of Cp4.1LG16g00350 vs. TrEMBL
Match: B9S8L0_RICCO (Upstream activation factor subunit UAF30, putative OS=Ricinus communis GN=RCOM_0602170 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 2.0e-105
Identity = 217/346 (62.72%), Postives = 268/346 (77.46%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI+RLREFL++SDLN TTT IVRR+LEE FG+DLSDKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELIERLREFLKNSDLNTTTTGIVRRQLEEDFGIDLSDKKAFIREQVDLFLQSQFE 60

Query: 61  REEEEGGGDCEEADQEDGDE---NLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAK---- 120
             ++      EE +QED D+   N+K+E+ DGD++D + ++     G + + + +     
Sbjct: 61  ENDQN-----EEEEQEDDDDQRANVKSEQTDGDNDDDEEEESTASNGTSNAKRRSNEQKN 120

Query: 121 --KRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDES 180
             K+ GGGFSKLCSLSPQLQE  GVP++ARTEVVKQLW+HIR   LQDP+NRRNI+CDE 
Sbjct: 121 EGKKRGGGFSKLCSLSPQLQELTGVPQLARTEVVKQLWSHIREKKLQDPNNRRNIICDEP 180

Query: 181 LKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKK 240
            +ALF VDSI+MFQMNK LSKHIWPL+S+ V+PAKS  KEKQ                  
Sbjct: 181 FRALFGVDSIDMFQMNKVLSKHIWPLDSDGVVPAKSEPKEKQ------------------ 240

Query: 241 RQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDY 300
            +KQ +EE+ D+  R+EKR+K  KSGFLAPLQLSDAL+ F GTGE+ALSR+DV+KRMW+Y
Sbjct: 241 -RKQEREEEPDEPKRKEKRRKGEKSGFLAPLQLSDALIKFFGTGENALSRADVIKRMWEY 300

Query: 301 IKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKT 338
           IKQNNLQDPSDKRR+ICDEKLKELFDV++F+GFTV+KLL+ HFVKT
Sbjct: 301 IKQNNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLSAHFVKT 322

[Close]

BLAST of Cp4.1LG16g00350 vs. TrEMBL
Match: V4SPM5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026010mg PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.3e-104
Identity = 227/358 (63.41%), Postives = 277/358 (77.37%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RL+EFL++SDLN TTT IVRR+LE+ FGVDL+DKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQSQFE 60

Query: 61  REEEEGGGDCEEADQEDGDEN----LKTEE---------EDGDSEDGDNDDHDDE----K 120
            ++ +GG + E+  ++DG+++    +K++E         E+GD ++ D +D+DDE    K
Sbjct: 61  NDQNDGGNE-EQQQEDDGEDDQMAKVKSDETDGSDDAAVEEGDDDNNDENDNDDEANEAK 120

Query: 121 G--KTGSNKLAK--KRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQD 180
           G  K  S KL    K+ GGGFSKLC+LSPQLQEFIGV E+ARTEVVKQLW +IR  +LQD
Sbjct: 121 GPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQD 180

Query: 181 PSNRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQE 240
           P+NRRNI+CDE L+ALF VD+INMFQMNKALSKHIWPL+S+DVI  KS+ KEKQ      
Sbjct: 181 PNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQ------ 240

Query: 241 KEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESAL 300
                        +KQ + ED D+  R+EKRQK GKSGFLAPLQLS AL+ FLGTGESAL
Sbjct: 241 -------------RKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSGALIKFLGTGESAL 300

Query: 301 SRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKT 338
            RSDV+KRMWDYIK+ NLQDPSDKRR+ICDEKLKELFDVE+F+GFTV+KLLA HF+KT
Sbjct: 301 PRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVETFNGFTVTKLLAVHFLKT 338

[Close]

BLAST of Cp4.1LG16g00350 vs. TrEMBL
Match: A5BDQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044372 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.8e-103
Identity = 221/353 (62.61%), Postives = 264/353 (74.79%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSEL+ RL EFLR SDLN TTTAIVRRKLEE FG+DLS KK FIRE VDLFLQ++ E
Sbjct: 1   MVSDSELVARLHEFLRSSDLNTTTTAIVRRKLEEDFGIDLSGKKAFIREHVDLFLQSQLE 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDE---------------KGK 120
           + EE+  GD  E ++E+   N+K+E  +G     +NDD DDE               +G 
Sbjct: 61  KAEED-EGDGGEEEEEEHKSNVKSEGSNGSDSKDENDDDDDEEEEVEESSNGKGAKKRGS 120

Query: 121 TGSNKLAKKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRN 180
             SNK  KKR GGGF KLCSLSP+LQ+FIGVPE+ARTEVVKQLW HIR  +LQDP+NRRN
Sbjct: 121 KKSNKEVKKR-GGGFCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNRRN 180

Query: 181 ILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPK 240
           I+CDE+L+ALF VDSINMFQMNKALSKHIWPL+S+D  P K + KEKQ+K+++       
Sbjct: 181 IICDETLRALFGVDSINMFQMNKALSKHIWPLDSDDAAPVKPTPKEKQRKQER------- 240

Query: 241 EKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVV 300
                         DSD+  R++KRQK G SGFLAPL LSDALV FL   ESALSR++VV
Sbjct: 241 -------------XDSDEPKRKQKRQKGGNSGFLAPLPLSDALVKFLNIEESALSRAEVV 300

Query: 301 KRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           K++W+YIKQNNLQDPSDKRR+ICDEKLKELFDV+SF+GFTV KLL+ HF+KT+
Sbjct: 301 KKIWEYIKQNNLQDPSDKRRIICDEKLKELFDVDSFNGFTVPKLLSAHFIKTE 331

[Close]

BLAST of Cp4.1LG16g00350 vs. TrEMBL
Match: I1J943_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G183600 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 3.1e-103
Identity = 223/355 (62.82%), Postives = 263/355 (74.08%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEH- 60
           MVS+SELI RLREFLR SDLN TTTA VRR+LE  FG+DLSD+K FIREQVDLFLQTEH 
Sbjct: 1   MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSDRKAFIREQVDLFLQTEHN 60

Query: 61  ------------EREEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTG 120
                       E +EE+   + E++   D  E    EEE  + ED      + +K K  
Sbjct: 61  QPQQEERQNDDVEEQEEDAPNNPEQSQPSDSKEETDEEEEGEEEEDKPEQAKNAKKNKGR 120

Query: 121 SNKLAK---KRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRR 180
           SNKL     K+ GGGF KLCSLSPQLQEF+  PEMARTEVVKQLW +IR  NLQDP+NRR
Sbjct: 121 SNKLGDEVVKKRGGGFCKLCSLSPQLQEFMEAPEMARTEVVKQLWVYIREKNLQDPNNRR 180

Query: 181 NILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQP 240
           NI+CDE L++LF V+SINMFQMNKALSKHIWPLES+DV+  KS+ KEKQ           
Sbjct: 181 NIICDERLRSLFNVNSINMFQMNKALSKHIWPLESDDVVQVKSTPKEKQ----------- 240

Query: 241 KEKPQKKRQKQGKEEDSDDSAREEKRQK-KGKSGFLAPLQLSDALVTFLGTGESALSRSD 300
                   +KQ +++DSD++ ++EKRQK  GKSGFLAPLQLSDALV FLGTGES L+R+D
Sbjct: 241 --------KKQERDDDSDEAKKKEKRQKGGGKSGFLAPLQLSDALVNFLGTGESELARTD 300

Query: 301 VVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           V+KRMWDYIK NNLQDPSDKR++ICDEKLKELFDV+SF GFTV+KLLA HF+KT+
Sbjct: 301 VIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFTGFTVTKLLAPHFIKTE 336

[Close]

BLAST of Cp4.1LG16g00350 vs. TAIR10
Match: AT1G49520.1 (AT1G49520.1 SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 251.1 bits (640), Expect = 9.4e-67
Identity = 166/344 (48.26%), Postives = 224/344 (65.12%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDS+L+ +LRE LR SDL  TT A VRR+LE YFGV+L+DKK F+REQ+D FL+++  
Sbjct: 1   MVSDSDLVTQLREILRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFLESDAL 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGF 120
            E +         +QE+ D N       GD  D +  ++DD+K  T     AKKRGGG F
Sbjct: 61  LESKP--------EQEEEDCN-------GDQNDEEGSENDDDK--TELPVKAKKRGGG-F 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           +K+C LSPQL++F+G  ++ARTEVVK++W +IR ++LQDP+NRRNILCDESL +LFRV +
Sbjct: 121 NKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVKT 180

Query: 181 INMFQMNKALSKHIWPLESND--VIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKE 240
           INMFQMNKAL+KHIW L   D      K    ++   E+ EK+ + +E  +   ++  +E
Sbjct: 181 INMFQMNKALAKHIWALNDGDGCFKNVKEEDVDETSGERDEKDVKIEEALENNEEESREE 240

Query: 241 EDSDDSAREEKRQKKGKS---------GFLAPLQLSDALVTFLGTGESALSRSDVVKRMW 300
           ED     R+ K++K  KS         GF     LS  L  F GT +  L+R++VVK +W
Sbjct: 241 EDRSVRKRKRKKRKPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTPQ--LARTEVVKMLW 300

Query: 301 DYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATH 334
            YIK+NNLQDPSDKR +ICDE L+ LF VES + F ++K LA H
Sbjct: 301 KYIKENNLQDPSDKRTIICDESLRSLFPVESINMFQMNKQLAKH 324

[Close]

BLAST of Cp4.1LG16g00350 vs. TAIR10
Match: AT3G19080.1 (AT3G19080.1 SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-61
Identity = 160/347 (46.11%), Postives = 214/347 (61.67%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSD +L+ RLRE L  SDLN  T A VRR+LE  FGVDL+DKK +IR+Q+D FL++   
Sbjct: 1   MVSDLDLVTRLREILGSSDLNTATPASVRRQLEADFGVDLTDKKAYIRDQIDTFLESNGA 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGF 120
            E++      EE    D    +K E E GD ED D D    E+ K      AKKRGGG  
Sbjct: 61  VEDKPESPKVEEYINAD---EIKAEIEGGDGEDLDGDGSGSEEEKEERPVKAKKRGGG-I 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           +K+  LSPQL++ +G  ++ RTEVVK++W +IR  +LQDP +RR I+CDE L +LFRV +
Sbjct: 121 TKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHSLFRVKT 180

Query: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKEED 240
           INMFQMNKAL+KHIWPL   D      +   K++ E +  E   K+  Q +  ++ KEE+
Sbjct: 181 INMFQMNKALTKHIWPLGDGD----GCANDVKEEDEDEASEGTDKKGEQSEEVEENKEEE 240

Query: 241 SDD----SAREEKRQK----------KGKSGFLAPLQLSDALVTFLGTGESALSRSDVVK 300
           S++    S R+ KR+K          KG  GF     LS  L  F  TG + L+R++VVK
Sbjct: 241 SEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAF--TGVTELARTEVVK 300

Query: 301 RMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATH 334
            +W YIK+NNLQDP+DKR +ICDE  + LF VES + F ++K L  H
Sbjct: 301 LLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKH 337

[Close]

BLAST of Cp4.1LG16g00350 vs. TAIR10
Match: AT4G22360.1 (AT4G22360.1 SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 154.8 bits (390), Expect = 9.2e-38
Identity = 82/224 (36.61%), Postives = 131/224 (58.48%), Query Frame = 1


Query: 113 KKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESL 172
           +K G GG +K+C +SP+L+  +G P + RTE+V+QLW +IR NNLQDPSN+R I+CD++L
Sbjct: 190 RKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDAL 249

Query: 173 KALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKR 232
           + +F  D  +MF+MNK L+KHI PL+     P+K S + K+ K + E             
Sbjct: 250 RVVFETDCTDMFKMNKLLAKHILPLD-----PSKDSGQAKKAKTEVE------------- 309

Query: 233 QKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYI 292
                        + E  +    +   + + LS+ L  F GTGE+ ++  ++++R+W+YI
Sbjct: 310 ------------TKTETTEPISSTAISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYI 369

Query: 293 KQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVK 337
           K NNL+DP +   + CDEKL++L   ES     ++++L  H  K
Sbjct: 370 KLNNLEDPVNPMAIQCDEKLRDLLGCESISAVGINEMLRRHMYK 383

[Close]

BLAST of Cp4.1LG16g00350 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-13
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 105 KTGSNKLAKK-RGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNR 164
           K  S+  AK  R G G  K+  +S  L  FIG  E++RT  VK++W +I+ NNLQ+P N+
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 165 RNILCDESLKALFR-VDSINMFQMNKALSKH 194
           R ILCDE LK +F   D++   +++K LS+H
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQH 104

[Close]

BLAST of Cp4.1LG16g00350 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-12
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 222 KQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSR 281
           K+P  KP+ K + + K + SD  A++  R     +G      +S  L  FLGTGE+  SR
Sbjct: 33  KKPAAKPKAKAKPKPKAK-SDSPAKKTPRS----TGIFKVTPVSPVLAQFLGTGET--SR 92

Query: 282 SDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGF-TVSKLLATHFVKT 338
           +D +K +W YIK ++LQ+P+DKR + CDE LK +F+ +   GF  +SKLL+ HFVKT
Sbjct: 93  TDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVKT 142

[Close]

BLAST of Cp4.1LG16g00350 vs. NCBI nr
Match: gi|659116066|ref|XP_008457882.1| (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo])

HSP 1 Score: 532.3 bits (1370), Expect = 6.0e-148
Identity = 296/338 (87.57%), Postives = 309/338 (91.42%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLR+FLR+SDLN TTTAIVRRKLEE FG+DLSDKKRFIREQVDLFLQTEHE
Sbjct: 1   MVSDSELIGRLRDFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGF 120
           +  EEG G CEE +QEDGDENLK E EDGDSEDGDNDD DDEKGKT S+K AKKRG GGF
Sbjct: 61  KAVEEGYGHCEEVEQEDGDENLKMETEDGDSEDGDNDDEDDEKGKTSSDK-AKKRG-GGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           SKLCSLSPQLQEFIG  EMARTEVVKQLWNHIR NNLQDPSNRRNILCDE LKALF V+S
Sbjct: 121 SKLCSLSPQLQEFIGATEMARTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGVNS 180

Query: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKEED 240
           INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQ     KEKQPKEKPQKKRQKQGKEED
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQ-----KEKQPKEKPQKKRQKQGKEED 240

Query: 241 SDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           SDDSARE+KRQKKGKSGFLAPL LSDALV FLGTGE AL RSDVVKRMWDYIKQNNLQDP
Sbjct: 241 SDDSAREDKRQKKGKSGFLAPLPLSDALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDP 300

Query: 301 SDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           SDKRR+ICDE+LKELFDV+SF+GFTVSKLLATHF+K K
Sbjct: 301 SDKRRIICDERLKELFDVDSFNGFTVSKLLATHFIKMK 331

[Close]

BLAST of Cp4.1LG16g00350 vs. NCBI nr
Match: gi|449461413|ref|XP_004148436.1| (PREDICTED: upstream activation factor subunit UAF30 [Cucumis sativus])

HSP 1 Score: 521.2 bits (1341), Expect = 1.4e-144
Identity = 287/338 (84.91%), Postives = 304/338 (89.94%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLR+FLR+SDLN TTTAIVRRKLEE FG+DLSDKK FIREQVDLFLQTEHE
Sbjct: 1   MVSDSELISRLRDFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKLFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAKKRGGGGF 120
           +  +EG   CEE  QEDGDENLK E EDGDSEDGDND+ DDEKGKT S K+ K+  GGGF
Sbjct: 61  KAVQEGYAHCEEVHQEDGDENLKMETEDGDSEDGDNDNEDDEKGKTSSEKVKKR--GGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           +KLCSLSPQLQEFIG PEMARTEVVKQLWNHIR NNLQDPSNRRNILCDE LKALF V+S
Sbjct: 121 TKLCSLSPQLQEFIGAPEMARTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGVNS 180

Query: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKKRQKQGKEED 240
           INMFQMNKALSKHIWPLESNDVIPAKSSQKEK Q     KEKQPKEKPQKKRQKQGKEED
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEKPQ-----KEKQPKEKPQKKRQKQGKEED 240

Query: 241 SDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           SDDSARE+KRQKKGKSGFLAPL LS+ALV FLGTGE AL RSDVVKRMWDYIKQNNLQDP
Sbjct: 241 SDDSAREDKRQKKGKSGFLAPLPLSNALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDP 300

Query: 301 SDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           SDKRR+ICDE+LKELFDV+SF+GFTVSKLLATHF+K K
Sbjct: 301 SDKRRIICDERLKELFDVDSFNGFTVSKLLATHFIKMK 331

[Close]

BLAST of Cp4.1LG16g00350 vs. NCBI nr
Match: gi|719997548|ref|XP_010255131.1| (PREDICTED: upstream activation factor subunit spp27-like [Nelumbo nucifera])

HSP 1 Score: 396.4 bits (1017), Expect = 5.2e-107
Identity = 232/347 (66.86%), Postives = 274/347 (78.96%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSEL++RLREFL+ SDLN TTTAIVRRKLEE FGVDLSDKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELVERLREFLQTSDLNTTTTAIVRRKLEEDFGVDLSDKKAFIREQVDLFLQSQFE 60

Query: 61  REEEEGGGDCEEADQEDGDENLKTEEEDG-DSEDGDNDDHDDEKGKTG-------SNKLA 120
           + EEE     +E D+E+G     +E+ +G DSE+ ++ D ++E+G  G       SNKL 
Sbjct: 61  KAEEE-----QEDDEEEGKHKTNSEDNNGSDSEEDEDGDEEEEEGSNGRGRRKRSSNKLN 120

Query: 121 KK-RGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDES 180
           K  R  GGF+KLC LSP LQ+F+GVPEMARTEVVKQLW +IR NNLQDP+N+RNI+CDE+
Sbjct: 121 KDVRKRGGFTKLCKLSPLLQKFVGVPEMARTEVVKQLWAYIRENNLQDPNNKRNIICDET 180

Query: 181 LKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKK 240
           L++LFRVDSINMFQMNKALSKHIWPL++ D  P KS+QKEKQQ  KQE+++ P E  QK 
Sbjct: 181 LRSLFRVDSINMFQMNKALSKHIWPLDTEDA-PVKSTQKEKQQ--KQERKEDPNEPKQK- 240

Query: 241 RQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDY 300
                           EKRQK G SGFLAPL LSDALV FLGTGES+LSR+ VVKRMW+Y
Sbjct: 241 ----------------EKRQKGGNSGFLAPLPLSDALVKFLGTGESSLSRAGVVKRMWEY 300

Query: 301 IKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK 339
           IKQNNLQDPSDKRR+ICDEKLKELF+V+SFHGFTV KLLATHF+KT+
Sbjct: 301 IKQNNLQDPSDKRRIICDEKLKELFEVDSFHGFTVPKLLATHFIKTE 322

[Close]

BLAST of Cp4.1LG16g00350 vs. NCBI nr
Match: gi|255562647|ref|XP_002522329.1| (PREDICTED: upstream activation factor subunit UAF30 [Ricinus communis])

HSP 1 Score: 390.6 bits (1002), Expect = 2.8e-105
Identity = 217/346 (62.72%), Postives = 268/346 (77.46%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI+RLREFL++SDLN TTT IVRR+LEE FG+DLSDKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELIERLREFLKNSDLNTTTTGIVRRQLEEDFGIDLSDKKAFIREQVDLFLQSQFE 60

Query: 61  REEEEGGGDCEEADQEDGDE---NLKTEEEDGDSEDGDNDDHDDEKGKTGSNKLAK---- 120
             ++      EE +QED D+   N+K+E+ DGD++D + ++     G + + + +     
Sbjct: 61  ENDQN-----EEEEQEDDDDQRANVKSEQTDGDNDDDEEEESTASNGTSNAKRRSNEQKN 120

Query: 121 --KRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDES 180
             K+ GGGFSKLCSLSPQLQE  GVP++ARTEVVKQLW+HIR   LQDP+NRRNI+CDE 
Sbjct: 121 EGKKRGGGFSKLCSLSPQLQELTGVPQLARTEVVKQLWSHIREKKLQDPNNRRNIICDEP 180

Query: 181 LKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQEKEKQPKEKPQKK 240
            +ALF VDSI+MFQMNK LSKHIWPL+S+ V+PAKS  KEKQ                  
Sbjct: 181 FRALFGVDSIDMFQMNKVLSKHIWPLDSDGVVPAKSEPKEKQ------------------ 240

Query: 241 RQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDY 300
            +KQ +EE+ D+  R+EKR+K  KSGFLAPLQLSDAL+ F GTGE+ALSR+DV+KRMW+Y
Sbjct: 241 -RKQEREEEPDEPKRKEKRRKGEKSGFLAPLQLSDALIKFFGTGENALSRADVIKRMWEY 300

Query: 301 IKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKT 338
           IKQNNLQDPSDKRR+ICDEKLKELFDV++F+GFTV+KLL+ HFVKT
Sbjct: 301 IKQNNLQDPSDKRRIICDEKLKELFDVDTFNGFTVTKLLSAHFVKT 322

[Close]

BLAST of Cp4.1LG16g00350 vs. NCBI nr
Match: gi|567866417|ref|XP_006425831.1| (hypothetical protein CICLE_v10026010mg [Citrus clementina])

HSP 1 Score: 387.9 bits (995), Expect = 1.8e-104
Identity = 227/358 (63.41%), Postives = 277/358 (77.37%), Query Frame = 1


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RL+EFL++SDLN TTT IVRR+LE+ FGVDL+DKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELIARLQEFLKNSDLNTTTTGIVRRQLEKDFGVDLTDKKIFIREQVDLFLQSQFE 60

Query: 61  REEEEGGGDCEEADQEDGDEN----LKTEE---------EDGDSEDGDNDDHDDE----K 120
            ++ +GG + E+  ++DG+++    +K++E         E+GD ++ D +D+DDE    K
Sbjct: 61  NDQNDGGNE-EQQQEDDGEDDQMAKVKSDETDGSDDAAVEEGDDDNNDENDNDDEANEAK 120

Query: 121 G--KTGSNKLAK--KRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQD 180
           G  K  S KL    K+ GGGFSKLC+LSPQLQEFIGV E+ARTEVVKQLW +IR  +LQD
Sbjct: 121 GPAKRRSRKLNNEVKKRGGGFSKLCALSPQLQEFIGVTELARTEVVKQLWAYIREKDLQD 180

Query: 181 PSNRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDVIPAKSSQKEKQQKEKQE 240
           P+NRRNI+CDE L+ALF VD+INMFQMNKALSKHIWPL+S+DVI  KS+ KEKQ      
Sbjct: 181 PNNRRNIVCDERLRALFGVDTINMFQMNKALSKHIWPLDSDDVISVKSTPKEKQ------ 240

Query: 241 KEKQPKEKPQKKRQKQGKEEDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESAL 300
                        +KQ + ED D+  R+EKRQK GKSGFLAPLQLS AL+ FLGTGESAL
Sbjct: 241 -------------RKQERTEDLDEPTRKEKRQKGGKSGFLAPLQLSGALIKFLGTGESAL 300

Query: 301 SRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKT 338
            RSDV+KRMWDYIK+ NLQDPSDKRR+ICDEKLKELFDVE+F+GFTV+KLLA HF+KT
Sbjct: 301 PRSDVIKRMWDYIKEKNLQDPSDKRRIICDEKLKELFDVETFNGFTVTKLLAVHFLKT 338

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g00350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UAF30_SCHPO	1.8e-11	30.22	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
UAF30_YEAST	1.2e-07	30.49	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
TRI1_YEAST	1.0e-06	32.20	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE...	[more]
C3H44_ARATH	8.7e-06	42.42	Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g511...	[more]

BLAST of Cp4.1LG16g00350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJW7_CUCSA	9.7e-145	84.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G295440 PE=4 SV=1	[more]
B9S8L0_RICCO	2.0e-105	62.72	Upstream activation factor subunit UAF30, putative OS=Ricinus communis GN=RCOM_0...	[more]
V4SPM5_9ROSI	1.3e-104	63.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026010mg PE=4 SV=1	[more]
A5BDQ8_VITVI	1.8e-103	62.61	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044372 PE=4 SV=1	[more]
I1J943_SOYBN	3.1e-103	62.82	Uncharacterized protein OS=Glycine max GN=GLYMA_01G183600 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g00350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49520.1	9.4e-67	48.26	SWIB complex BAF60b domain-containing protein	[more]
AT3G19080.1	5.9e-61	46.11	SWIB complex BAF60b domain-containing protein	[more]
AT4G22360.1	9.2e-38	36.61	SWIB complex BAF60b domain-containing protein	[more]
AT2G35605.1	1.6e-13	43.96	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	1.0e-12	42.74	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Cp4.1LG16g00350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116066\|ref\|XP_008457882.1\|	6.0e-148	87.57	PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]	[more]
gi\|449461413\|ref\|XP_004148436.1\|	1.4e-144	84.91	PREDICTED: upstream activation factor subunit UAF30 [Cucumis sativus]	[more]
gi\|719997548\|ref\|XP_010255131.1\|	5.2e-107	66.86	PREDICTED: upstream activation factor subunit spp27-like [Nelumbo nucifera]	[more]
gi\|255562647\|ref\|XP_002522329.1\|	2.8e-105	62.72	PREDICTED: upstream activation factor subunit UAF30 [Ricinus communis]	[more]
gi\|567866417\|ref\|XP_006425831.1\|	1.8e-104	63.41	hypothetical protein CICLE_v10026010mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR019835	SWIB_domain
IPR014876	DEK_C
IPR009057	Homeobox-like_sf
IPR003121	SWIB_MDM2_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g00350.1	Cp4.1LG16g00350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003121	SWIB/MDM2 domain	GENE3D	G3DSA:1.10.245.10		coord: 251..337 score: 3.5E-33coord: 113..199 score: 3.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 122..194 score: 4.7E-30coord: 261..334 score: 5.1
IPR003121	SWIB/MDM2 domain	unknown	SSF47592	SWIB/MDM2 domain	coord: 254..336 score: 8.34E-26coord: 118..198 score: 1.13
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 3..56 score: 2.0
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 2..55 score: 5.9
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 258..338 score: 1.5E-25coord: 120..199 score: 1.5
None	No IPR available	unknown	Coil	Coil	coord: 203..223 scor
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 1..211 score: 4.5E-155coord: 231..336 score: 4.5E
None	No IPR available	PANTHER	PTHR13844:SF4	PROTEIN K03B8.4-RELATED	coord: 1..211 score: 4.5E-155coord: 231..336 score: 4.5E
None	No IPR available	unknown	SSF109715	DEK C-terminal domain	coord: 3..56 score: 1.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g00350	Cucsa.250580	Cucumber (Gy14) v1	cgycpeB0665
Cp4.1LG16g00350	CmaCh20G011240	Cucurbita maxima (Rimu)	cmacpeB565
Cp4.1LG16g00350	CmaCh02G006100	Cucurbita maxima (Rimu)	cmacpeB629
Cp4.1LG16g00350	CmoCh02G006150	Cucurbita moschata (Rifu)	cmocpeB578
Cp4.1LG16g00350	CmoCh20G011570	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g00350	Cla020134	Watermelon (97103) v1	cpewmB290
Cp4.1LG16g00350	Csa2G295440	Cucumber (Chinese Long) v2	cpecuB268
Cp4.1LG16g00350	MELO3C020943	Melon (DHL92) v3.5.1	cpemeB259
Cp4.1LG16g00350	ClCG02G013290	Watermelon (Charleston Gray)	cpewcgB257
Cp4.1LG16g00350	CSPI02G14920	Wild cucumber (PI 183967)	cpecpiB270
Cp4.1LG16g00350	Lsi10G006440	Bottle gourd (USVL1VR-Ls)	cpelsiB222
Cp4.1LG16g00350	MELO3C020943.2	Melon (DHL92) v3.6.1	cpemedB304
Cp4.1LG16g00350	CsaV3_2G017470	Cucumber (Chinese Long) v3	cpecucB0335
Cp4.1LG16g00350	Bhi10G001841	Wax gourd	cpewgoB0356
Cp4.1LG16g00350	CsGy2G014920	Cucumber (Gy14) v2	cgybcpeB194
Cp4.1LG16g00350	Carg11678	Silver-seed gourd	carcpeB1474
Cp4.1LG16g00350	Carg20945	Silver-seed gourd	carcpeB1378

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g00350	Cp4.1LG05g10700	Cucurbita pepo (Zucchini)	cpecpeB313

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g00350	Cucurbita pepo (Zucchini)	cpecpeB068
Cp4.1LG16g00350	Cucurbita pepo (Zucchini)	cpecpeB295
Cp4.1LG16g00350	Cucurbita maxima (Rimu)	cmacpeB623
Cp4.1LG16g00350	Cucurbita maxima (Rimu)	cmacpeB660
Cp4.1LG16g00350	Cucurbita moschata (Rifu)	cmocpeB573
Cp4.1LG16g00350	Watermelon (97103) v1	cpewmB284
Cp4.1LG16g00350	Cucumber (Gy14) v2	cgybcpeB774
Cp4.1LG16g00350	Melon (DHL92) v3.6.1	cpemedB330
Cp4.1LG16g00350	Silver-seed gourd	carcpeB0560
Cp4.1LG16g00350	Silver-seed gourd	carcpeB1132
Cp4.1LG16g00350	Silver-seed gourd	carcpeB1472
Cp4.1LG16g00350	Cucumber (Chinese Long) v3	cpecucB0366