Carg20945 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20945
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	upstream activation factor subunit spp27-like
Location	Cucurbita_argyrosperma_scaffold_141 : 781237 .. 788476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAATCTCCCGTCTGTTCTTCACGCAAAGTCTTTTTTCCTGTTCGAAACCAAAGCCAAGACAAAGCCACACACCACACGCCACGGATAGTGTGCCCTCAACTCCAAATCCTACCCTCCTATCATCGATTGTTCTTCCTTCAATCTGCGAGGTTTTGCTCTGCTTCGAATAAGATTGTGGATTTCAACAATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAAGATGGAGATAGTGAAGACGGAGATAACGACGACCACGTTGATGAAAAGGGTAAAACGGGGTGAGTGTTGATTGATGAAACTTCGCAATTATAAAGATTATGGATTTCAGCTCAGTGTTGGGGGTTTAAATGGCTCTAATGTGTAGCTTAGTAATTTTTGTCCATATACGGTGCAAAAAGACAGTGAATCGATTCGTTTTCATACTGAAAATAGTGGCAACATTGTAAAAATCATCAACGCTGGAGCTTCTATCCTCAATCGATCGCAACATTGTCGATTGTAATATCTTTTGGTATTGCGTTGATTAACTCTTTATTTTAGTTGTTAGAATTAAGCATTTTTTGTTGTCCGATGACGAAATCAGTGTTCTCAGCTACTCAGGGGAAAGCCTTATCTTAAAAATCGTATGGATTTTGCATGAATTTTTATCTGAGTCTGATAAACTATGCAGATTATGGAAATAAGTGTTCTAGCAACAAGCTAGCTAATTTGATCATTGTAAAACAATGCAAATATGTTTCCAAACCTCGATTGATGACCTCCATTTGCCCAACTAGTTTGGGAAGTCAAGGGCAATTGGGAGAGAGTGTTAGACTTATTGAATGTCTGGCTTACATGCAATTACAATTAATCCTATGTTGGGGGGAATTTTCACCTTTTTCTTTCATTAATCCCATAGCAGGAACTTTTGGGAGACCTTGCTTCAGGGTTTTGAATTCCAGGGCTAAAAACAATGTTCTGAATCTACTTCGTGGCCATGGTCTAAGAGGGAGTGAAAAAGTTTTATGGATCAACGGTGTCAAATCTGTGGTTTGGGCTGTTTGTTTGAAGGGAATCACATTCTAATGAGAACTAATGTGCTTCTTGGGAGGAAAAACTTGAAATATTTTAGTACCGCACTGCTTCATGGATGTTCTGACATTAATTCTTGTTGGGCTTTTTTGTTTTTTTGTTTTGTAATTCTCTGATCAGATGGTGTTTTTAGCTTTAGCTTTATGTTTTCTTGGTTTGGGTAGTTTCAGGTTGTAAATTTTCATGTATATGAATCGTTAAAAGACACTTGAAATTTCTATTAGAGACCAACTTTGATGATTGAGTTAATTGTTCTTTGTAATGCAGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTACATCTAGAAAGTAAATTTTGAACCCCTTTTATTCAATCTTCTTAATGTACTAATGAAGTCATGTGTTGTCTTTTTCATTCCTTCCAATGCCATAATTGCGATTTTTTTCTCAGGTTGTGAAGCAACTATGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGGTGTGCTTTTATAGCTTTAATTTTGTGGCTAAAATTATGCTTCTGTTTTCTCAGGTGTTTGGACTTACCATTGCTCTTAATAATAGCTATTTTTTAATGTCATCTGGCTTCTATGGAACTTTGAGTGCTATTTCAATATTGACTCTTGAATTTTCTTTTCTTCAATTTATATTCCCTTTTTTTTCTTTTAAATCGTAATAAAGGACACTTTTTGTTTGGATGCTCCTGATTTGGAGGGGTTTCAAATCGTAACTGATTTCCAATGAATTCTGTCGTCTGTGATCACAAGAAAGAGAATGATTTGAATTCTTGAAGTGTTTTCAAATCTTGTTTTTACATAAAAAAGAGAAAAATTTGCCATACTAAAATTGAGATTAGTTACTTGCATGACCTTGTGATATTTGAATTTTCTATTAATAATTTATAACTAAAAGCCTATATCAGTGAACTTCTTACTTTCTAGAAGCGGCAGAAGCAAGGGAAAGAAGAAGGTAGATAGCGAAAATAGTTGTCTTTGTTTGAAATTCTATGACTGCGTACTCTGTTCATGGCAAGAAACCCCTGTAGGGGTACTATAACAAGACTTCTAAAATCATTAGTAGGATAAAATCTGAATTTTTCAGATAAGGTATACCAAGAAGCCGCATAAAGTTGAATCACCTTGGATCTCTCTTCCTTTATCTTTGAAGATCCATTGGTTTCTTTCTAATCATATGCCCCCAAAAAGTTGCTTAAGTCCATTAATCCACAATAATTTAGCACATCTTTTCATCCCTTGGCCAATCTGTGCAATTGTAGCTTTAACTCCAATATTGAAAATCCAGGAAAAGCCAAGGTTGAAAACGCGATCCCAGATTTTACCCGTGAGTAGGGGTGAAGGGGTGATCATCGATTGGTTGGCATCAATTTTGGGTTCATAAGCTGATCCTACTTGAACGAATTGCCAGATAGGGTGGCATTTTCTGCAATTTTATGCTAAATTTAGCCCCTCTGAGTATACTAACCTGACCAAAATATTCACTTTACTGCTGTGTGAGAGAAAACAAAGTAAGGGTTTTATTCTTCTTTCATGGATGAGCATCCAATTTGAATGAGTTGCTAGATAGGGTCACCTGTTCTGCACTTTTTATGCTAAATTTAGCCCTTCCAAGTACACTAACCTGACCAAAATATTTACCTTTTGGGGGCATTAAAGCTTTCATATAGCTTCAATAAAATGTGTTGGAAGAGGACCTTGTGTCAATACTTAAAACAAAGGATTCATTGAAAAACTGTAAGGCCTCCTATTGAGAGCATATGAGATGAGGGTAAAGGAAAATGTATCTTAAAGTTAGCTAGAATAGACTGTGTTTATATATATATATATAGGTTAGGGTTGTAAGATTGAGGTAAGAAGGTTCTTGTGGGTTATTTGTAGGGGAGAGAAGATGACCTTCTCAAATTGGCTGCAAGTCTTGTATGGTGCTAGGTTGACCTCTACCCTTTTAAATAAGAAGAATCTTAAATGTTGATACCTATTACAAACCTACCGTATCCAAGCCTTCATGATGAGTCTTCCTGCAGCTACAATTAATTCTAATGAAGATTCTCAAAGCTGGTCTCTTAAATTCTTGGATGGGTTTTCTGTCAAATCTTGGACTTGTCATTTGGCTTCATCATCTCATTTGGACAAAGATATATTTTCACCTCCGTGGAAATTGGAAGTCAAAAAGCCCAAAGAAAACTGTTTGTGGATTATGCTCAATGATAATCTTTAGCTCCTCCGAGGTTTTGCAAAGAAAGCTTCCTCTCCAATGTCTATGGCCATCGGTTTGTTCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGCGGGGGATTATCTAAATCACATTTTCTTTGAATGTTCATACTCTTGTTCATGCTGGCTCAAGCTTTTTTCGATATTCAATGTCCAGTGGGTTTTCTCTAACATAATGAACGAAAAGGTTTCTCAACCTCTTGTTGGTCCCCTTCTGAATCTTAAGGTGATGTTCCTATGGCTTAATGCGGTCAAAAGGCATTCTACCATAATTATGGTTGGAGAGGAATCGGAGAATTTTTCAAAATCAGCGCCTTTCTTGGTTTGGCTGATTTGAAGCAGCATGATTAAAGTCTTCTTCTTGGTGTTCTCTCTTAAAGATTTTTGTTGGGTGTTCTTTACAAGATATTTGTCTTGATTGACATGCCTTTATTTCTCCTTTATATAGTTTTTTTTTTCTTTCTTTTTACTGTTTTATCCTGCATAGGGGGATGTTTACCTTCAGAGTCCTTGCCCCTCCAAAAGGCTTTTCATGCAGCTCTTTCTTTCATTGTTTGGCTAGCTCCTTTCAGTCAAGTGACTATCTTTCCCTTTTTGTGCAATTATCAATTAGGTCTCATTCTTTTAGACATTATGTATGCCCTTGTACATTCTTTCATTTTTCTTAGTGAGAGCTCAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTTGAAAAAATAACAAACAAAATATTTCCCTCTGTATGGAAGGTAAAATTTCCAAGAAGGTCAAGTTTTTGGTGTGGCAAGTTATGCATGGAACTTGGAAATCTTAACACCTTGGATCCAATAACAGTTAGGGTGTCCTCTTTGGTTGGGCTGCTTTGTTGTATTTTTTTTTTTTTGCAGAAAGTTTCAAAGGACCCTGATCATTTAATCTGAAGATGTGATTTCACCAGGGCTATGTAGCTGTTTATTTGAGATATTTAGCTTTAGCTTTTCCAGGAATGTTTGTGAAGCTTCTTCTTACTCACCTTTCTGTGAGAAAGGGTTATTTTTTTGGCAGGCTGGGGTTTCATTTTGTGGAGTCTTTGGTGGGAGAGAAATAATCGAATCTTTCAAGAAATGAGAGATCTTATAGTGAAGTTTGGCCCCTTGAAGTCTTATTTTACTAGATTGAAGCTCCTTTTTGTAGTTTGTTGTCTAGTTTCCCCTTTTTTGTGGGTTTTTGATGTATGTCCTTATATTTTTTTTCACTTTTTCTTAACGAAGGTTCGGTGTACCCTTTAATTAATTGCCCAACGTAATTGCTTCAGAACGAATTAGAAAAGATGTAAAATTTTAAATTATACTGTTTCCCGTTTCAGCTGACCGAAGGTTCTACTATACTAATATCTAACAAACCTTCTTTCCAGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGTAGTTGGCCTTTAGAAAGAATGAAAGATACTTTGATAGTATAGTAACAGTATGTGCTTATGAGTCGGCAGATAGCCTAGCTATTATTTGGGAAATTAGAGAGAATATGTGAATCTTGGAAAACATGCTTGATTTTAGTATTTTTGTAGGTGTTCATATCATATGCTAGTATTCATCCATCATTTATGGCTTGTGATTTCACTTAGGTGATCAACTTGGCTGTTCCTTCATCGCATTAATCAATTTTTTCTCATTGTATTTTGACTTGCATGTTCTTTTATCATGCATTATTGCTCCAAACCAATGTGATTTATGACCAGAATATATATCTATCTATCTATATACATATATTGTTCTTACCTAGCCATTGTTTTCATGCTGTTTAGTTATATATTCCATCCTCTATGTGTAGCATATAATTGTACCTATTTTTTAGAAGTTTTTAGAATATGTGGATTCCCTTAGCTGACATTGTTTACATACCCCAGCTCTTGATCTTGGGATAGTTTTTTTTTTTTTCCTTCTTGTTTTTGAGTATGGCTTGAACTTTTAGAAGCGTAACTTATTATAATGGAATAAATGTTAAAAGTTTTCTTTTGGACCTTTCATTTCTAAAGATTATTGTTATCATTGTTTAAAAATTCTTGTTCCTTCTCATTTTATGAGTGAAAAATTCATATTGGTAGAATCTGGAAAGTTCTAATAGTTGAGTGAAAAGTTACGTGAGGAACACCCAGCCCAGGAAAGCTTTCAAGAATTTCTCCAATTTGAATTAATAAAAATAAATTCTCACAAGAGGCTAGAGGGAGTAAATCAATAGGAACTCAAGTTCTGGCTCTACTCTCACTCTTTCTGCCGTTCCCTCCTTTCTCTCCGTTCCGATTGGTAGTCATCATAGGCAATACTTTTGAGGAATCTTTTCTTATTTGAATATGATCTTAATGGTCTATAAGTAGGTCAACTTATGGTGATTTCACGTAGTATTAAAGCTGAAATCTTGAATGCAAATCTGTCTGTTTGGGGTTTGCAAGTTAAATTCGATATCCAAGCCTACATGTTAGGCATAATGTTGAGGATATTCACATATATTGAATTGATTAGTACTGTAATACAATCATTTTAGCTTGGATTTAGTGCTCTGATTAATTGGCAATCCTATCCTATTTCTTCATTATTTTGGATTCCACTTGTTTAGAAGGTAGCCAAATTCCTTGGAAGGTGGGAAATGCCTCGTTTTACTTGAGAGGATAGACGTGCCTTTATTCACTGTATTTTTCCGCATACCGTCTCTCTTTTTATGTCGCCTTGCACACCAGTCTATCATGCGAGTTCAATCTAGTTACCTAGTTTGTTGTAATAGCTAAGTTCACGCTAGCATATATTGTCCTCTTTAGCTTTTTTCTTTTGGGCATCTCCTCAAAGTTTTTAAAACGTCTATTAGGGAGAGATTTCCACACCCTTATAAAGAATCTTTTGTTCTCTCCAACCGACGTGGGATCTCACATGTGGTCTCCAAGAATTCATTTTTCATAGTGGAAATATGGTTACTTTTCCAAAAGAATGGAAAAGAAAACCCCAGCTTTTCTGTTAGAATCCTGGCACTATTTGGAGGCACTAAGAATTCCTTGGAGTAAATAGGAATAGTTATTATGGGTGCCCATCTTTTTTGTGTTTGCGCTCGTGCAAGAAAAATGTTGATAATGAACATAGAAATTATGTTATTTTGACGATGCATCATTTAACATCTGAAAATGTTTCTTAATTGTTCTTGAAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAG

mRNA sequence

CCAATCTCCCGTCTGTTCTTCACGCAAAGTCTTTTTTCCTGTTCGAAACCAAAGCCAAGACAAAGCCACACACCACACGCCACGGATAGTGTGCCCTCAACTCCAAATCCTACCCTCCTATCATCGATTGTTCTTCCTTCAATCTGCGAGGTTTTGCTCTGCTTCGAATAAGATTGTGGATTTCAACAATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAAGATGGAGATAGTGAAGACGGAGATAACGACGACCACGTTGATGAAAAGGGTAAAACGGGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTATGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAG

Coding sequence (CDS)

ATGGTTTCCGACTCGGAGCTCATCGACCGGCTCCGAGAGTTTCTTCGGGATTCCGACCTCAATATCACCACCACTGCTATTGTCCGCCGGAAGCTTGAGGAGTACTTTGGCGTTGATTTGTCCGATAAGAAGCGGTTTATTAGGGAACAGGTGGACTTGTTCCTCCAGACTGAGCATGAGAGAGAGGAGGAAGAAGGTGGCGGCGACTGTGAGGAAGCCGACCAGGAGGATGGAGATGAAAATTTGAAGACGGAAGAGGAAGATGGAGATAGTGAAGACGGAGATAACGACGACCACGTTGATGAAAAGGGTAAAACGGGTTCTAACAAGCTTGCGAAGAAAAGAGGAGGGGGTGGTTTTAGCAAGCTATGTAGCCTTTCTCCTCAACTTCAGGAATTTATAGGAGTTCCTGAAATGGCAAGGACTGAGGTTGTGAAGCAACTATGGAACCACATTAGAGGGAACAATTTGCAAGACCCCAGTAATAGAAGAAATATTCTCTGTGATGAATCGTTAAAGGCACTCTTTCGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCTCTATCAAAGCATATTTGGCCTTTGGAATCAAACGACGATTCAGATGACTCTGCAAGAGAGGAAAAGCGGCAAAAGAAAGGGAAATCTGGTTTTCTTGCTCCTCTTCAACTTTCAGATGCTCTGGTGACATTTCTTGGTACCGGAGAGAGTGCATTGTCTCGCTCTGATGTAGTGAAAAGAATGTGGGATTACATAAAGCAAAATAACCTTCAGGACCCTTCTGACAAAAGGAGAGTAATTTGTGACGAGAAGCTAAAGGAACTCTTCGATGTCGAGTCCTTTCACGGCTTCACCGTTTCGAAACTCCTGGCCACTCATTTTGTAAAGACAAAATAG

Protein sequence

MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHEREEEEGGGDCEEADQEDGDENLKTEEEDGDSEDGDNDDHVDEKGKTGSNKLAKKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDSINMFQMNKALSKHIWPLESNDDSDDSAREEKRQKKGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVSKLLATHFVKTK

Homology

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BLAST of Carg20945 vs. NCBI nr
Match: XP_022971720.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 453.8 bits (1166), Expect = 4.7e-124
Identity = 289/338 (85.50%), Postives = 292/338 (86.39%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE
Sbjct: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGF 120
           REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GK GSNKLAKKRGGGGF
Sbjct: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKMGSNKLAKKRGGGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS
Sbjct: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180

Query: 181 INMFQMNKALSKHIWPLESND--------------------------------------D 240
           INMFQMNKALSKHIWPLESND                                       
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           XXXXXXXXXXXXX    FLAPLQLSDALVTFLGTGE++LSRSDVVKRMWDYIKQNNLQDP
Sbjct: 241 XXXXXXXXXXXXXXXXXFLAPLQLSDALVTFLGTGENSLSRSDVVKRMWDYIKQNNLQDP 300

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BLAST of Carg20945 vs. NCBI nr
Match: XP_023512445.1 (upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.3 bits (1118), Expect = 1.7e-118
Identity = 284/338 (84.02%), Postives = 284/338 (84.02%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE
Sbjct: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGF 120
           R          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TGSNKLAKKRGGGGF
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSNKLAKKRGGGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS
Sbjct: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180

Query: 181 INMFQMNKALSKHIWPLESND--------------------------------------D 240
           INMFQMNKALSKHIWPLESND                                       
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           XXXXXXXXXXXXX KSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP
Sbjct: 241 XXXXXXXXXXXXXXKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300

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BLAST of Carg20945 vs. NCBI nr
Match: XP_022928098.1 (upstream activation factor subunit UAF30-like [Cucurbita moschata])

HSP 1 Score: 432.2 bits (1110), Expect = 1.5e-117
Identity = 283/338 (83.73%), Postives = 283/338 (83.73%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE
Sbjct: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGF 120
           R          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TGSNKLAKKRGGGGF
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSNKLAKKRGGGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALF VDS
Sbjct: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFCVDS 180

Query: 181 INMFQMNKALSKHIWPLESND--------------------------------------D 240
           INMFQMNKALSKHIWPLESND                                       
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300
           XXXXXXXXXXXXX KSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP
Sbjct: 241 XXXXXXXXXXXXXXKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDP 300

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BLAST of Carg20945 vs. NCBI nr
Match: XP_023532389.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 1.7e-105
Identity = 259/328 (78.96%), Postives = 274/328 (83.54%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLRE LR+SDLN TTTAIVRRKLEE F +DLSDKK+FIREQVDLFL TEH+
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDFSIDLSDKKKFIREQVDLFLHTEHQ 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAK--KRGGG 120
           R +EE GGDC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K KTGSN+L K  K+ GG
Sbjct: 61  RLDEEDGGDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKTGSNELGKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIR  NLQDPSNRRNILCDE  KALF V
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPFKALFGV 180

Query: 181 DSINMFQMNKALSKHIWPLESND----------------------------DXXXXXXXX 240
           +SI+MFQMNKALSKHIW LESND                             XXXXXXXX
Sbjct: 181 NSIDMFQMNKALSKHIWALESNDVTPAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVIC 299
           XXXXX    FLAPLQLSDALVTFLGTGE+ALSRS+VVKRMWDY+KQNNLQDPSDKRR+IC
Sbjct: 241 XXXXXXXXXFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYMKQNNLQDPSDKRRIIC 300

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BLAST of Carg20945 vs. NCBI nr
Match: XP_023007205.1 (upstream activation factor subunit UAF30-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 388.7 bits (997), Expect = 1.9e-104
Identity = 258/329 (78.42%), Postives = 272/329 (82.67%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLRE LR+SDLN TTTAIVRRKLEE + +DLSDKK+FIREQVDLFL TEH+
Sbjct: 1   MVSDSELISRLRELLRNSDLNTTTTAIVRRKLEEDYSIDLSDKKQFIREQVDLFLHTEHQ 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAK--KRGGG 120
           R +EE GG C+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           K  K+ GG
Sbjct: 61  RVDEEDGGGCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVKKRGG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRV 180
           GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIR  NLQDPSNRRNILCDE LKALF V
Sbjct: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIREKNLQDPSNRRNILCDEPLKALFGV 180

Query: 181 DSINMFQMNKALSKHIWPLESND-----------------------------DXXXXXXX 240
           +SINMFQMNKALSKHIWPLESND                              XXXXXXX
Sbjct: 181 NSINMFQMNKALSKHIWPLESNDVTPAKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVI 299
           XXXXXXGKSGFLAPLQLSDALVTFLGTGE+ALSRS+VVKRMWDYIKQNNLQDPSDKRR+I
Sbjct: 241 XXXXXXGKSGFLAPLQLSDALVTFLGTGENALSRSEVVKRMWDYIKQNNLQDPSDKRRII 300

[Close]

BLAST of Carg20945 vs. TAIR10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-63
Identity = 128/205 (62.44%), Postives = 157/205 (76.59%), Query Frame = 0


Query: 113 KKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESL 172
           K++GGGGF+K+CSLSP+LQ F GV E+ARTEVVK LW +I+ NNLQDP+++R+I+CDES 
Sbjct: 257 KRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESF 316

Query: 173 KALFRVDSINMFQMNKALSKHIWPLESN-----------------DDXXXXXXXXXXXXX 232
           ++LF V+SINMFQMNK L+KHIWPLE N                 +     XXXXXXXXX
Sbjct: 317 RSLFPVESINMFQMNKQLTKHIWPLEDNAGESVSSKSPKNGKQKMESDGDSXXXXXXXXX 376

Query: 233 GKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLK 292
                LAPL LSDALV FLG GE++LSR+DVVKR+W+YI  N+LQDPSDKRRVICDEKLK
Sbjct: 377 XXXEVLAPLPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLK 436

Query: 293 ELFDVESFHGFTVSKLLATHFVKTK 301
           ELF+V+SF   +VSKLL  HF+K +
Sbjct: 437 ELFEVDSFEDTSVSKLLTNHFIKAE 461

[Close]

BLAST of Carg20945 vs. TAIR10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-61
Identity = 158/348 (45.40%), Postives = 198/348 (56.90%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEH- 60
           MVSDS+L+ +LRE LR SDL  TT A VRR+LE YFGV+L+DKK F+REQ+D FL+++  
Sbjct: 1   MVSDSDLVTQLREILRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFLESDAL 60

Query: 61  -EREEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGG 120
            E + E+   DC                     XXXXXXXXXX    T     AKKR GG
Sbjct: 61  LESKPEQEEEDCN-------------------GXXXXXXXXXXXXXXTELPVKAKKR-GG 120

Query: 121 GFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRV 180
           GF+K+C LSPQL++F+G  ++ARTEVVK++W +IR ++LQDP+NRRNILCDESL +LFRV
Sbjct: 121 GFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRV 180

Query: 181 DSINMFQMNKALSKHIWPLESNDDXXXXXXXXXXXXXGKSG------------------- 240
            +INMFQMNKAL+KHIW L  ND                SG                   
Sbjct: 181 KTINMFQMNKALAKHIWAL--NDGDGCFKNVKEEDVDETSGERDEKDVKIEEALXXXXXX 240

Query: 241 --------------------------------FLAPLQLSDALVTFLGTGESALSRSDVV 296
                                           F     LS  L  F GT +  L+R++VV
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKVCSLSPELQAFTGTPQ--LARTEVV 300

[Close]

BLAST of Carg20945 vs. TAIR10
Match: AT4G22360.1 (SWIB complex BAF60b domain-containing protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40
Identity = 76/194 (39.18%), Postives = 120/194 (61.86%), Query Frame = 0


Query: 113 KKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESL 172
           +K G GG +K+C +SP+L+  +G P + RTE+V+QLW +IR NNLQDPSN+R I+CD++L
Sbjct: 190 RKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDAL 249

Query: 173 KALFRVDSINMFQMNKALSKHIWPLESNDD--------XXXXXXXXXXXXXGKSGFLAPL 232
           + +F  D  +MF+MNK L+KHI PL+ + D                       +   + +
Sbjct: 250 RVVFETDCTDMFKMNKLLAKHILPLDPSKDSGQAKKAKTEVETKTETTEPISSTAISSTV 309

Query: 233 QLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFH 292
            LS+ L  F GTGE+ ++  ++++R+W+YIK NNL+DP +   + CDEKL++L   ES  
Sbjct: 310 TLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRDLLGCESIS 369

Query: 293 GFTVSKLLATHFVK 299
              ++++L  H  K
Sbjct: 370 AVGINEMLRRHMYK 383

[Close]

BLAST of Carg20945 vs. TAIR10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-15
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 218 SGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKEL 277
           +G      +S  L  FLGTGE+  SR+D +K +W YIK ++LQ+P+DKR + CDE LK +
Sbjct: 62  TGIFKVTPVSPVLAQFLGTGET--SRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLI 121

Query: 278 FDVESFHGF-TVSKLLATHFVKT 300
           F+ +   GF  +SKLL+ HFVKT
Sbjct: 122 FEGKDKVGFLEISKLLSPHFVKT 142

[Close]

BLAST of Carg20945 vs. TAIR10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 105 KTGSNKLAKK-RGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNR 164
           K  S+  AK  R G G  K+  +S  L  FIG  E++RT  VK++W +I+ NNLQ+P N+
Sbjct: 14  KAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNK 73

Query: 165 RNILCDESLKALFR-VDSINMFQMNKALSKH 194
           R ILCDE LK +F   D++   +++K LS+H
Sbjct: 74  REILCDEQLKTIFSGKDTVGFLEISKLLSQH 104

[Close]

BLAST of Carg20945 vs. Swiss-Prot
Match: sp|O74503|UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 29/60 (48.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 132 EFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDSINMFQMNKALS 191
           EF+G+ +++R + VK+LW +I+ ++LQDP+++R ILCD+ LK++F VD+++MF MNK L+
Sbjct: 129 EFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLT 188

[Close]

BLAST of Carg20945 vs. Swiss-Prot
Match: sp|Q05024|TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-12
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 126 LSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDSINMFQ 185
           LS  LQ+F+G  E+ RT+VVK +W +I+ ++LQ+P +RR ILCDE ++ +F    + MF 
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFS 185

Query: 186 MNKALSKHIW 196
           MNK L+KH++
Sbjct: 186 MNKLLTKHLF 194

[Close]

BLAST of Carg20945 vs. Swiss-Prot
Match: sp|Q08747|UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-12
Identity = 58/194 (29.90%), Postives = 88/194 (45.36%), Query Frame = 0


Query: 5   SELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHEREEE 64
           S +ID L   L D DL   TT  VR  L+E + +D+  + + I + +   L    ER   
Sbjct: 8   STMIDIL---LSDMDLETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLVKERPRF 67

Query: 65  EGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGFSKL- 124
           E                                       +T    + KK+G    S + 
Sbjct: 68  ER----SLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPIS 127

Query: 125 ---CSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 184
               +LS  L   +G  E+ RTEVV++LW +I+ +NLQ+P+N++ ILCDE L+ L    S
Sbjct: 128 TRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS 187

Query: 185 INMFQMNKALSKHI 195
            NMF+M+K L+ H+
Sbjct: 188 TNMFEMHKILASHM 193

[Close]

BLAST of Carg20945 vs. Swiss-Prot
Match: sp|Q91FL8|VF306_IIV6 (Putative SWIB domain-containing protein 306R OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-306R PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-08
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 0


Query: 119 GFSKLCSLSPQLQEFIGV--PEM-ARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKAL 178
           G  KL  ++  L +F+G    EM +R +V K +  H+    LQ+  N++ I+CD  L  L
Sbjct: 141 GLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKIIMCDTMLIDL 200

Query: 179 FRVDSINMFQMNKALSKHIWPL--ESNDDXXXXXXXXXXXXXGKSGFLAPLQLSDALVTF 238
            R++  N  +    +  H+  L  E   +              +       + S ++ T 
Sbjct: 201 LRLEP-NAQRTYTEIQSHLNHLFIEKTSELTLYPSEELIKFYDEHS-----KQSSSIGTN 260

Query: 239 LGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVS 290
                S +S  DV K   DYI++N+L+D  +KR++I D+ LK LF   SF  +  S
Sbjct: 261 KWCTTSLISWDDVNKIFSDYIRENSLKDTVNKRKIILDDNLKSLFKSRSFWFYNTS 310

[Close]

BLAST of Carg20945 vs. Swiss-Prot
Match: sp|Q9SD34|C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=At3g51120 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 7.9e-06
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 231 VTFLGTGE-SALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELFDVESFHGFTVS 290
           V+F+  G+ S LS+ DV   + DYIK+ NL+DP  K +V+CD+ L +LF  +    F + 
Sbjct: 328 VSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEML 387

Query: 291 KLLATH 296
           KLL +H
Sbjct: 388 KLLESH 393

[Close]

BLAST of Carg20945 vs. TrEMBL
Match: tr|A0A1S3C766|A0A1S3C766_CUCME (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103497460 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 5.2e-103
Identity = 253/333 (75.98%), Postives = 264/333 (79.28%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLR+FLR+SDLN TTTAIVRRKLEE FG+DLSDKKRFIREQVDLFLQTEHE
Sbjct: 1   MVSDSELIGRLRDFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKRFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGF 120
           +  EEG G CE    XXXXXXXXXXXXXXXXXXXXXXXXXX           K+  GGGF
Sbjct: 61  KAVEEGYGHCEEVEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKR--GGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           SKLCSLSPQLQEFIG  EMARTEVVKQLWNHIR NNLQDPSNRRNILCDE LKALF V+S
Sbjct: 121 SKLCSLSPQLQEFIGATEMARTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGVNS 180

Query: 181 INMFQMNKALSKHIWPLESND---------------------------------DXXXXX 240
           INMFQMNKALSKHIWPLESND                                  XXXXX
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRR 300
           XXXXXXXX KSGFLAPL LSDALV FLGTGE AL RSDVVKRMWDYIKQNNLQDPSDKRR
Sbjct: 241 XXXXXXXXXKSGFLAPLPLSDALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDPSDKRR 300

[Close]

BLAST of Carg20945 vs. TrEMBL
Match: tr|A0A0A0LJW7|A0A0A0LJW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295440 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.7e-101
Identity = 241/333 (72.37%), Postives = 256/333 (76.88%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLR+FLR+SDLN TTTAIVRRKLEE FG+DLSDKK FIREQVDLFLQTEHE
Sbjct: 1   MVSDSELISRLRDFLRNSDLNTTTTAIVRRKLEEDFGIDLSDKKLFIREQVDLFLQTEHE 60

Query: 61  REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKKRGGGGF 120
           +  +EG   CE            XXXXXXXXXXXXXXXXXX         + K+  GGGF
Sbjct: 61  KAVQEGYAHCEEVHQEDGDENLKXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKR--GGGF 120

Query: 121 SKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALFRVDS 180
           +KLCSLSPQLQEFIG PEMARTEVVKQLWNHIR NNLQDPSNRRNILCDE LKALF V+S
Sbjct: 121 TKLCSLSPQLQEFIGAPEMARTEVVKQLWNHIRENNLQDPSNRRNILCDEPLKALFGVNS 180

Query: 181 INMFQMNKALSKHIWPLESND---------------------------------DXXXXX 240
           INMFQMNKALSKHIWPLESND                                  XXXXX
Sbjct: 181 INMFQMNKALSKHIWPLESNDVIPAKSSQKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRR 300
           XXXXXXXX KSGFLAPL LS+ALV FLGTGE AL RSDVVKRMWDYIKQNNLQDPSDKRR
Sbjct: 241 XXXXXXXXXKSGFLAPLPLSNALVAFLGTGEDALPRSDVVKRMWDYIKQNNLQDPSDKRR 300

[Close]

BLAST of Carg20945 vs. TrEMBL
Match: tr|A0A2I4HKK0|A0A2I4HKK0_9ROSI (upstream activation factor subunit spp27-like OS=Juglans regia OX=51240 GN=LOC109018949 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 9.7e-94
Identity = 236/329 (71.73%), Postives = 258/329 (78.42%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELI RLREFL+ SDLN TTTA VRR+LE  FGVDL+DKK FIREQVD+FLQ+ HE
Sbjct: 1   MVSDSELILRLREFLQSSDLNTTTTATVRRRLEADFGVDLTDKKAFIREQVDVFLQSLHE 60

Query: 61  REEE----------EGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNK 120
           + EE          EGG D       XXXXXXXXXXXXXXXXXXXXXXXXX       +K
Sbjct: 61  KTEEAAEDAEAEVDEGGTDDRTENAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKHK 120

Query: 121 LAKKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDE 180
              K+ GGGFSKLCSLSPQLQEF+G  EMARTEVVKQLW +IR NNLQDP+NRRNI CDE
Sbjct: 121 NEVKKRGGGFSKLCSLSPQLQEFLGESEMARTEVVKQLWAYIRENNLQDPNNRRNINCDE 180

Query: 181 SLKALFRVDSINMFQMNKALSKHIWPLESND-------------------DXXXXXXXXX 240
            L+ALF V SINMFQMNKALSKHIWPL+S+D                    XXXXXXXXX
Sbjct: 181 PLRALFSVKSINMFQMNKALSKHIWPLDSDDVVPVKSMQKDRXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICD 300
           XXX GKSGFLAPLQLSD LV FLGTGESALSR DV+KR+W+YIKQNNLQDPSDKRR+ICD
Sbjct: 241 XXXGGKSGFLAPLQLSDTLVKFLGTGESALSRGDVIKRIWEYIKQNNLQDPSDKRRIICD 300

[Close]

BLAST of Carg20945 vs. TrEMBL
Match: tr|A0A2P2MF92|A0A2P2MF92_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 227/331 (68.58%), Postives = 247/331 (74.62%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSELIDRLREFL +SDL+ TTT  VRR+LEE FGVDLSDKK FIREQVDLF+Q+  +
Sbjct: 1   MVSDSELIDRLREFLTNSDLDTTTTGTVRRQLEEDFGVDLSDKKAFIREQVDLFIQSHFQ 60

Query: 61  REEEEG-----------GGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSN 120
             E E                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   K GSN
Sbjct: 61  NAENESQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGSN 120

Query: 121 K--LAKKRGGGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNIL 180
           K     K+ GGGFSK CSLSPQLQEFIGVP +ARTEVVKQLW +IR  +LQDP NRRNI+
Sbjct: 121 KHTSESKKRGGGFSKPCSLSPQLQEFIGVPALARTEVVKQLWAYIREKDLQDPKNRRNII 180

Query: 181 CDESLKALFRVDSINMFQMNKALSKHIWPLESND-------------------DXXXXXX 240
           CDE L ALF VDSINMFQMNKALSKHIWPL+S+D                          
Sbjct: 181 CDERLNALFGVDSINMFQMNKALSKHIWPLDSDDVIPVKSAQREKKQRHVREEVPDEPKR 240

Query: 241 XXXXXXXGKSGFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRV 300
                  GKSGFLAPLQLSDALV FLGTGESALSR+DVVKRMWDYIKQN+LQDPSD+RR+
Sbjct: 241 NEKRQKGGKSGFLAPLQLSDALVNFLGTGESALSRADVVKRMWDYIKQNDLQDPSDRRRI 300

[Close]

BLAST of Carg20945 vs. TrEMBL
Match: tr|A0A1U8A1Y9|A0A1U8A1Y9_NELNU (upstream activation factor subunit spp27-like OS=Nelumbo nucifera OX=4432 GN=LOC104595881 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.6e-91
Identity = 236/322 (73.29%), Postives = 261/322 (81.06%), Query Frame = 0


Query: 1   MVSDSELIDRLREFLRDSDLNITTTAIVRRKLEEYFGVDLSDKKRFIREQVDLFLQTEHE 60
           MVSDSEL++RLREFL+ SDLN TTTAIVRRKLEE FGVDLSDKK FIREQVDLFLQ++ E
Sbjct: 1   MVSDSELVERLREFLQTSDLNTTTTAIVRRKLEEDFGVDLSDKKAFIREQVDLFLQSQFE 60

Query: 61  ---REEEEGGGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGKTGSNKLAKK-RG 120
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       NKL K  R 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKLNKDVRK 120

Query: 121 GGGFSKLCSLSPQLQEFIGVPEMARTEVVKQLWNHIRGNNLQDPSNRRNILCDESLKALF 180
            GGF+KLC LSP LQ+F+GVPEMARTEVVKQLW +IR NNLQDP+N+RNI+CDE+L++LF
Sbjct: 121 RGGFTKLCKLSPLLQKFVGVPEMARTEVVKQLWAYIRENNLQDPNNKRNIICDETLRSLF 180

Query: 181 RVDSINMFQMNKALSKHIWPLESND------------------DXXXXXXXXXXXXXGKS 240
           RVDSINMFQMNKALSKHIWPL++ D                   XXXXXXXXXXXXX  S
Sbjct: 181 RVDSINMFQMNKALSKHIWPLDTEDAPVKSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXS 240

Query: 241 GFLAPLQLSDALVTFLGTGESALSRSDVVKRMWDYIKQNNLQDPSDKRRVICDEKLKELF 300
           GFLAPL LSDALV FLGTGES+LSR+ VVKRMW+YIKQNNLQDPSDKRR+ICDEKLKELF
Sbjct: 241 GFLAPLPLSDALVKFLGTGESSLSRAGVVKRMWEYIKQNNLQDPSDKRRIICDEKLKELF 300

The following BLAST results are available for this feature:

BLAST of Carg20945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971720.1	4.7e-124	85.50	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]
XP_023512445.1	1.7e-118	84.02	upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928098.1	1.5e-117	83.73	upstream activation factor subunit UAF30-like [Cucurbita moschata]	[more]
XP_023532389.1	1.7e-105	78.96	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007205.1	1.9e-104	78.42	upstream activation factor subunit UAF30-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg20945 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19080.1	3.3e-63	62.44	SWIB complex BAF60b domain-containing protein	[more]
AT1G49520.1	1.1e-61	45.40	SWIB complex BAF60b domain-containing protein	[more]
AT4G22360.1	1.8e-40	39.18	SWIB complex BAF60b domain-containing protein	[more]
AT3G03590.1	9.7e-15	48.19	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.1e-13	43.96	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Carg20945 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O74503\|UAF30_SCHPO	1.1e-12	48.33	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
sp\|Q05024\|TRI1_YEAST	2.5e-12	47.14	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
sp\|Q08747\|UAF30_YEAST	5.6e-12	29.90	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|Q91FL8\|VF306_IIV6	2.9e-08	27.84	Putative SWIB domain-containing protein 306R OS=Invertebrate iridescent virus 6 ...	[more]
sp\|Q9SD34\|C3H44_ARATH	7.9e-06	42.42	Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg20945 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C766\|A0A1S3C766_CUCME	5.2e-103	75.98	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LJW7\|A0A0A0LJW7_CUCSA	1.7e-101	72.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295440 PE=4 SV=1	[more]
tr\|A0A2I4HKK0\|A0A2I4HKK0_9ROSI	9.7e-94	71.73	upstream activation factor subunit spp27-like OS=Juglans regia OX=51240 GN=LOC10...	[more]
tr\|A0A2P2MF92\|A0A2P2MF92_RHIMU	1.2e-91	68.58	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A1U8A1Y9\|A0A1U8A1Y9_NELNU	1.6e-91	73.29	upstream activation factor subunit spp27-like OS=Nelumbo nucifera OX=4432 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036885	SWIB_MDM2_dom_sf
IPR014876	DEK_C
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20945-RA	Carg20945-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 120..199 e-value: 1.5E-35 score: 134.1 coord: 220..300 e-value: 1.5E-25 score: 100.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 223..296 e-value: 4.7E-27 score: 93.6 coord: 122..194 e-value: 4.1E-30 score: 103.4
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 2..59 e-value: 1.2E-5 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..218
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 1..295
None	No IPR available	PANTHER	PTHR13844:SF23	SUBFAMILY NOT NAMED	coord: 1..295
None	No IPR available	SUPERFAMILY	SSF109715	DEK C-terminal domain	coord: 3..56
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 2..55 e-value: 4.5E-16 score: 58.4
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	G3DSA:1.10.245.10		coord: 214..300 e-value: 2.3E-28 score: 99.9 coord: 114..204 e-value: 4.7E-31 score: 108.6
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	SSF47592	SWIB/MDM2 domain	coord: 118..198
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	SSF47592	SWIB/MDM2 domain	coord: 216..298

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20945	Cla020134	Watermelon (97103) v1	carwmB0993
Carg20945	Csa2G295440	Cucumber (Chinese Long) v2	carcuB1006
Carg20945	MELO3C020943	Melon (DHL92) v3.5.1	carmeB0967
Carg20945	ClCG02G013290	Watermelon (Charleston Gray)	carwcgB0967
Carg20945	CSPI02G14920	Wild cucumber (PI 183967)	carcpiB1030
Carg20945	Cucsa.250580	Cucumber (Gy14) v1	carcgyB1109
Carg20945	CmaCh00G006570	Cucurbita maxima (Rimu)	carcmaB1371
Carg20945	CmaCh20G011240	Cucurbita maxima (Rimu)	carcmaB1374
Carg20945	CmoCh20G011570	Cucurbita moschata (Rifu)	carcmoB1331
Carg20945	Lsi10G006440	Bottle gourd (USVL1VR-Ls)	carlsiB906
Carg20945	Cp4.1LG16g00350	Cucurbita pepo (Zucchini)	carcpeB1378
Carg20945	CsGy2G014920	Cucumber (Gy14) v2	carcgybB0979
Carg20945	MELO3C020943.2	Melon (DHL92) v3.6.1	carmedB0977
Carg20945	CsaV3_2G017470	Cucumber (Chinese Long) v3	carcucB1036
Carg20945	Cla97C02G038980	Watermelon (97103) v2	carwmbB1045
Carg20945	Bhi10G001841	Wax gourd	carwgoB1163

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None