Cp4.1LG15g06780 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06780
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionF-box family protein
LocationCp4.1LG15 : 7459993 .. 7460472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTTGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCCTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

mRNA sequence

ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTTGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCCTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

Coding sequence (CDS)

ATGCAGCCAAATGCACCACAAGGAGATACCAAACGCAAGAACAACAGCAAGAAAATCAAATTCTCAATCAACGATCACCTCGATATCCTCACCGAAATCCTCAAGCGACTTGACGGTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGTCACGTCTCCTCTCCGCCTCTCTCCTCCGTCCGTCCTCTCATCCTCGCTCTCGGCGGCTACAAGAGACTCTACATGCTCTGCCTTCGTCCCGTCCTCTCCCGATTGAATCGCTCCGGTTTGGTCCCCCGCGTACGGACTCTCCAAGATCAGGTACAGCGACTCTCGCTCTCCTTGTTCTGCGTCGATTATTACGAGAGAAACGGTTGGCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGGTTCCTCTGCAAACCGGTGAACGTATAA

Protein sequence

MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV
Homology
[Close]
BLAST of Cp4.1LG15g06780 vs. Swiss-Prot
Match: SNE_ARATH (F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-38
Identity = 88/156 (56.41%), Postives = 109/156 (69.87%), Query Frame = 1 

Query: 7   QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 66
           + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE L
Sbjct: 12  KSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEEL 71

Query: 67  CFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLS 126
           CFR VS  P  S+R ++ ALGGY+ LY LC+RPVL+RL      P++   +DQ+Q LSLS
Sbjct: 72  CFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQ-LSLS 131

Query: 127 LFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV 160
           L+CV YYER     WLG    A   SL FL KPVNV
Sbjct: 132 LYCVHYYERLYVGAWLGD---APPSSLIFLRKPVNV 156

[Close]
BLAST of Cp4.1LG15g06780 vs. Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 28  DILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPLS--SVRPLILA 87
           D++ E+L+R +  +L AAACV R W  LA  D+ LWE  C R  ++   S   +R ++L+
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 88  LGGYKRLYMLCLRPVLSR-----LNRSGLVPRVRTLQDQVQRLSLSLFCVDYYE 135
           LGG++RL+ + +RP+  R       +    P VR  +DQVQ LSLSLF + +++
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQ-LSLSLFSIGFFQ 190

[Close]
BLAST of Cp4.1LG15g06780 vs. Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 1 

Query: 8   GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 67
           GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+
Sbjct: 12  GDAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DE 71

Query: 68  SLWEHLCFRHVSSPPL--SSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQD 127
            LWE +C RH ++     + +R ++LALGG++RL+ L L P LS+ N     PR R  +D
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKD 131

Query: 128 QVQRLSLSLFCVDYYER 136
           ++ +L+LSL  + YYE+
Sbjct: 132 EL-KLTLSLLSIRYYEK 139

[Close]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match: B9IAS1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16360g PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.2e-50
Identity = 105/148 (70.95%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 17  KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPL 76
           K+ KF INDH+DIL EILKRLDG SLC +ACVCRLWC +ARN DSLWEHLCFRHVS PP 
Sbjct: 8   KRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCFRHVSPPPS 67

Query: 77  SSVRPLILALGGYKRLYMLCLRPVLSRLNR---SGLVPRVRTL--QDQVQRLSLSLFCVD 136
           S VRP+++ALGGYKRLYM+C+RPVLSRL R   +G   RVR +  +D+VQ LSLSLFCVD
Sbjct: 68  SGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVWTRDEVQ-LSLSLFCVD 127

Query: 137 YYERNGWLGGDAAAAAPSLRFLCKPVNV 160
           YYER G LGG   A+  SL FLCKPVNV
Sbjct: 128 YYERLGRLGGGGDASGSSLMFLCKPVNV 153

[Close]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match: M5WSV2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012743mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-49
Identity = 107/150 (71.33%), Postives = 121/150 (80.67%), Query Frame = 1 

Query: 13  KNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVS 72
           ++  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  LARN DSLWEHLCFRHVS
Sbjct: 10  EDKEKRPKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTLARN-DSLWEHLCFRHVS 69

Query: 73  SPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLSLFCVDY 132
           SPP SSVRP+++ALGGYKRLY +C+RPVLSRL+ S LV RV T +D+VQ LSLSLFCVDY
Sbjct: 70  SPPPSSVRPVVVALGGYKRLYRVCVRPVLSRLSDSDLVRRVWT-RDEVQ-LSLSLFCVDY 129

Query: 133 YERNGWLGGDAA---AAAPSLRFLCKPVNV 160
           YER+G LGG      A+A SL FLC  VNV
Sbjct: 130 YERSGRLGGGGGGGDASASSLMFLCNTVNV 156

[Close]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match: A0A067K4E4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18487 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-46
Identity = 104/146 (71.23%), Postives = 118/146 (80.82%), Query Frame = 1 

Query: 21  FSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPLSSVR 80
           F INDH+DIL EILKRLDG SL  AACVCRLWC +ARND SLWE LCFRHVSSPP S+VR
Sbjct: 19  FPINDHVDILIEILKRLDGRSLGVAACVCRLWCTIARND-SLWEDLCFRHVSSPPPSTVR 78

Query: 81  PLILALGGYKRLYMLCLRPVLSRLNRS---GLVPRVRTL--QDQVQRLSLSLFCVDYYER 140
           P+++ALGGYK+LYM+C+RPVLSRL R    G   RVR +  +D+VQ LSLSLFCVDYYER
Sbjct: 79  PVVVALGGYKKLYMVCVRPVLSRLGRRLRLGDSDRVRRIWTRDEVQ-LSLSLFCVDYYER 138

Query: 141 --NGWLGGDAAAAAPSLRFLCKPVNV 160
             NG L GDA+A+  SL FLCKPVNV
Sbjct: 139 LGNGRLSGDASAS--SLMFLCKPVNV 160

[Close]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match: A0A059DEL0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01039 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.3e-46
Identity = 103/154 (66.88%), Postives = 120/154 (77.92%), Query Frame = 1 

Query: 17  KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPL 76
           K+ KF INDH+D+L EILKRLDG SLC AACVCRLW ALARN DS+WEHLCFRH+S PP 
Sbjct: 11  KRPKFCINDHVDVLAEILKRLDGRSLCVAACVCRLWSALARN-DSVWEHLCFRHLSPPPP 70

Query: 77  SSVRPLILALGGYKRLYMLCLRPVLSRLNRS---GLVPRVRTLQDQVQRLSLSLFCVDYY 136
           SSVRP++ ALGGY+RLYM+C+RPVLSRL RS    L  RVR+ ++   +LSLSLFCVDYY
Sbjct: 71  SSVRPVVSALGGYRRLYMVCIRPVLSRLGRSRRAELPWRVRSREE--LQLSLSLFCVDYY 130

Query: 137 ER--NGWLGG------DAAAAAPSLRFLCKPVNV 160
           ER  NG  GG       +A+A+ SL FLCKPVNV
Sbjct: 131 ERLGNGSGGGGSRFGDGSASASSSLMFLCKPVNV 161

[Close]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match: G7KEM1_MEDTR (F-box SNE-like protein OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.3e-46
Identity = 97/161 (60.25%), Postives = 121/161 (75.16%), Query Frame = 1 

Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ    +  ++ +  SK+ KF IND++DIL EILKRLDGPSL  A+CVCRLWC L   DD
Sbjct: 9   MQEGTRRTTSRTQQQSKRHKFFINDNIDILREILKRLDGPSLGVASCVCRLWCNLTTKDD 68

Query: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           S+WEHLCFRHVS+PP +SVRP+++ALGGYKRLYM+C+RPVLSRL  S +V +    + +V
Sbjct: 69  SIWEHLCFRHVSTPPPASVRPVVVALGGYKRLYMVCVRPVLSRLGESEMVRKQVWTRHEV 128

Query: 121 QRLSLSLFCVDYYER--NGWLGGDAAAAAPSLRFLCKPVNV 160
           Q LSLSLFC+D YER   G +  DAAA+  SL FLC P+NV
Sbjct: 129 Q-LSLSLFCIDSYERLAGGMVASDAAAS--SLIFLCNPINV 166

[Close]
BLAST of Cp4.1LG15g06780 vs. TAIR10
Match: AT5G48170.1 (AT5G48170.1 F-box family protein)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-39
Identity = 88/156 (56.41%), Postives = 109/156 (69.87%), Query Frame = 1 

Query: 7   QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 66
           + + KR+  ++   FSINDH D+L EIL+RLDG SLC+AACVCRLW A+ARN DS+WE L
Sbjct: 12  KSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEEL 71

Query: 67  CFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLS 126
           CFR VS  P  S+R ++ ALGGY+ LY LC+RPVL+RL      P++   +DQ+Q LSLS
Sbjct: 72  CFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQ-LSLS 131

Query: 127 LFCVDYYER---NGWLGGDAAAAAPSLRFLCKPVNV 160
           L+CV YYER     WLG    A   SL FL KPVNV
Sbjct: 132 LYCVHYYERLYVGAWLGD---APPSSLIFLRKPVNV 156

[Close]
BLAST of Cp4.1LG15g06780 vs. TAIR10
Match: AT4G24210.1 (AT4G24210.1 F-box family protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 49/137 (35.77%), Postives = 81/137 (59.12%), Query Frame = 1 

Query: 8   GDTKRKNNSK-------KIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 67
           GD   + N K       +I FS  D  +++ E+LK +D  +L  ++CV ++W   A+ D+
Sbjct: 12  GDAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DE 71

Query: 68  SLWEHLCFRHVSSPPL--SSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQD 127
            LWE +C RH ++     + +R ++LALGG++RL+ L L P LS+ N     PR R  +D
Sbjct: 72  RLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKD 131

Query: 128 QVQRLSLSLFCVDYYER 136
           ++ +L+LSL  + YYE+
Sbjct: 132 EL-KLTLSLLSIRYYEK 139

[Close]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match: gi|470135511|ref|XP_004303558.1| (PREDICTED: F-box protein SNE [Fragaria vesca subsp. vesca])

HSP 1 Score: 209.1 bits (531), Expect = 5.5e-51
Identity = 109/159 (68.55%), Postives = 130/159 (81.76%), Query Frame = 1 

Query: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60
           MQ ++P+     +NN +  +F INDH+DI+ E+LKRLDGPSL  AACVCRLWC++ARN D
Sbjct: 1   MQQSSPE-----ENNIRGPQFCINDHIDIVVEVLKRLDGPSLGVAACVCRLWCSVARN-D 60

Query: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120
           SLWEHLCFRHVSSPP SSVRP+++ALGGYKRLYM+C+RPVLSRL+ S LV RV T +D+V
Sbjct: 61  SLWEHLCFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRPVLSRLSDSDLVRRVWT-RDEV 120

Query: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 160
           Q LSLSLFCVDYYER   LGG  A+A+ SL FLC PVNV
Sbjct: 121 Q-LSLSLFCVDYYERR--LGGGEASASSSLMFLCNPVNV 149

[Close]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match: gi|1009161181|ref|XP_015898758.1| (PREDICTED: F-box protein SNE [Ziziphus jujuba])

HSP 1 Score: 206.1 bits (523), Expect = 4.6e-50
Identity = 111/158 (70.25%), Postives = 125/158 (79.11%), Query Frame = 1 

Query: 6   PQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEH 65
           PQ +       K+ +F INDH+DIL EILKRLDGPSL AAACVCRLWCA+ RN DSLWEH
Sbjct: 2   PQQNRAEDQKEKRPRFCINDHIDILIEILKRLDGPSLGAAACVCRLWCAITRN-DSLWEH 61

Query: 66  LCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSL 125
           LCFRHVSSPP SSVRP+++ALGGYKRLYM+C+R VLSRL  S LV RV T  D+VQ LSL
Sbjct: 62  LCFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRQVLSRLGHSDLVRRVWT-GDEVQ-LSL 121

Query: 126 SLFCVDYYER----NGWLGGDAAAAAPSLRFLCKPVNV 160
           SLFCVDYYER    +G LGG  A+A+ SL FLCKPVNV
Sbjct: 122 SLFCVDYYERLGSGSGRLGGGDASAS-SLMFLCKPVNV 155

[Close]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match: gi|224131838|ref|XP_002321191.1| (hypothetical protein POPTR_0014s16360g [Populus trichocarpa])

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 105/148 (70.95%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 17  KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPL 76
           K+ KF INDH+DIL EILKRLDG SLC +ACVCRLWC +ARN DSLWEHLCFRHVS PP 
Sbjct: 8   KRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCFRHVSPPPS 67

Query: 77  SSVRPLILALGGYKRLYMLCLRPVLSRLNR---SGLVPRVRTL--QDQVQRLSLSLFCVD 136
           S VRP+++ALGGYKRLYM+C+RPVLSRL R   +G   RVR +  +D+VQ LSLSLFCVD
Sbjct: 68  SGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVWTRDEVQ-LSLSLFCVD 127

Query: 137 YYERNGWLGGDAAAAAPSLRFLCKPVNV 160
           YYER G LGG   A+  SL FLCKPVNV
Sbjct: 128 YYERLGRLGGGGDASGSSLMFLCKPVNV 153

[Close]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match: gi|658013789|ref|XP_008342205.1| (PREDICTED: F-box protein SNE-like [Malus domestica])

HSP 1 Score: 203.4 bits (516), Expect = 3.0e-49
Identity = 106/155 (68.39%), Postives = 124/155 (80.00%), Query Frame = 1 

Query: 7   QGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHL 66
           Q  + R++  K+ KF INDH+DIL EILKRLDGPSL  AACVCRLW  +ARN DSLWEHL
Sbjct: 5   QNTSSRESKEKRSKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTVARN-DSLWEHL 64

Query: 67  CFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQVQRLSLS 126
           CFRHVSSPP SSV+P+++ALGGYKRLY +C+RPVLSRL+ S +V RV T +D+VQ LSLS
Sbjct: 65  CFRHVSSPPSSSVKPVVVALGGYKRLYRVCVRPVLSRLSDSDMVRRVWT-RDEVQ-LSLS 124

Query: 127 LFCVDYYERNGWL--GGDAAAAAPSLRFLCKPVNV 160
           LFCVDYYER+G L  GG   A+A SL FLC  VNV
Sbjct: 125 LFCVDYYERSGRLSGGGGGDASASSLMFLCNTVNV 156

[Close]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match: gi|743922650|ref|XP_011005399.1| (PREDICTED: F-box protein SNE [Populus euphratica])

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-49
Identity = 104/148 (70.27%), Postives = 118/148 (79.73%), Query Frame = 1 

Query: 17  KKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPL 76
           K+ KF INDH+DIL EILKRLDG SLC +ACVCRLWC +ARN DSLWEHLCFRHVS PP 
Sbjct: 8   KRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCFRHVSPPPS 67

Query: 77  SSVRPLILALGGYKRLYMLCLRPVLSRLNR---SGLVPRVRTL--QDQVQRLSLSLFCVD 136
           S VRP+++ALGGYKRLYM+C+RPVL RL R   +G   RVR +  +D+VQ LSLSLFCVD
Sbjct: 68  SGVRPVVVALGGYKRLYMVCVRPVLRRLGRLRLAGDSDRVRRVWTRDEVQ-LSLSLFCVD 127

Query: 137 YYERNGWLGGDAAAAAPSLRFLCKPVNV 160
           YYER G LGG   A+  SL FLCKPVNV
Sbjct: 128 YYERLGRLGGGGDASGSSLMFLCKPVNV 153

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SNE_ARATH7.0e-3856.41F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1[more]
GID2_ORYSJ1.9e-1138.60F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1[more]
GID2_ARATH1.9e-1135.77F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1[more]
BLAST of Cp4.1LG15g06780 vs. TrEMBL
Match NameE-valueIdentityDescription
B9IAS1_POPTR7.2e-5070.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16360g PE=4 SV=1[more]
M5WSV2_PRUPE3.6e-4971.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012743mg PE=4 SV=1[more]
A0A067K4E4_JATCU4.8e-4671.23Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18487 PE=4 SV=1[more]
A0A059DEL0_EUCGR6.3e-4666.88Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01039 PE=4 SV=1[more]
G7KEM1_MEDTR6.3e-4660.25F-box SNE-like protein OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1[more]
BLAST of Cp4.1LG15g06780 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48170.13.9e-3956.41 F-box family protein[more]
AT4G24210.11.1e-1235.77 F-box family protein[more]
BLAST of Cp4.1LG15g06780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|470135511|ref|XP_004303558.1|5.5e-5168.55PREDICTED: F-box protein SNE [Fragaria vesca subsp. vesca][more]
gi|1009161181|ref|XP_015898758.1|4.6e-5070.25PREDICTED: F-box protein SNE [Ziziphus jujuba][more]
gi|224131838|ref|XP_002321191.1|1.0e-4970.95hypothetical protein POPTR_0014s16360g [Populus trichocarpa][more]
gi|658013789|ref|XP_008342205.1|3.0e-4968.39PREDICTED: F-box protein SNE-like [Malus domestica][more]
gi|743922650|ref|XP_011005399.1|3.9e-4970.27PREDICTED: F-box protein SNE [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009937 regulation of gibberellic acid mediated signaling pathway
biological_process GO:0048831 regulation of shoot system development
biological_process GO:0008150 biological_process
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06780.1Cp4.1LG15g06780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 28..69
score: 5.9
IPR001810F-box domainSMARTSM00256fbox_2coord: 27..65
score: 1.
IPR001810F-box domainunknownSSF81383F-box domaincoord: 28..79
score: 3.14
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 28..93
score: 1.0
NoneNo IPR availablePANTHERPTHR20995FAMILY NOT NAMEDcoord: 21..106
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g06780Cucsa.120290Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g06780CmaCh19G008590Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g06780CmaCh20G006800Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g06780CmoCh19G008740Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g06780Cla015686Watermelon (97103) v1cpewmB268
Cp4.1LG15g06780Csa6G111930Cucumber (Chinese Long) v2cpecuB250
Cp4.1LG15g06780MELO3C025964Melon (DHL92) v3.5.1cpemeB213
Cp4.1LG15g06780ClCG02G002810Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g06780Lsi11G013510Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g06780Lsi10G000510Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g06780CsaV3_6G009570Cucumber (Chinese Long) v3cpecucB0316
Cp4.1LG15g06780Bhi10G001022Wax gourdcpewgoB0336
Cp4.1LG15g06780CsGy6G009280Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g06780Carg16101Silver-seed gourdcarcpeB0484
Cp4.1LG15g06780Carg04149Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g06780Cp4.1LG16g03770Cucurbita pepo (Zucchini)cpecpeB255
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g06780Wax gourdcpewgoB0326
Cp4.1LG15g06780Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g06780Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g06780Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g06780Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g06780Wild cucumber (PI 183967)cpecpiB251
Cp4.1LG15g06780Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g06780Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06780Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g06780Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g06780Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g06780Silver-seed gourdcarcpeB1481
Cp4.1LG15g06780Cucumber (Chinese Long) v3cpecucB0322