Cla015686 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015686
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box protein GID2 (AHRD V1 ***- B6TRD7_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box
Location	Chr2 : 2596782 .. 2597261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAA

mRNA sequence

ATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAA

Coding sequence (CDS)

ATGATGCAGCGAAATGCACAACAAGAAGATAACGAACAGAACAACAACAAGAAATTCAAATTCTCAATCAACGATCACCTCGACATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCCCTCTGCGCCGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTAGCAACGACGATTCACTCTGGGAGCATCTCTGTTTCCGGCACCTCTCTTCTTCGCCGCCTTCCTCCCTCCGCCCTCTCGTTCTCGCTCTCGGCGGCTACAAGAGACTCTATTTGCTCTGCCTCCGTCCTGTCCTCACTCGATTGAATCGCTCCGGTTTGCTCCCTCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCCTTGTTCTGCGTCGATTACTATGAGAGAAACGATTGCCTCGGCGGCGACTTGGCCGCCGCGGCTCCTTCGCTGCGTTTCCTCTGCAAACCGCTGAACGTATAA

Protein sequence

MMQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV

Homology

[Close]

BLAST of Cla015686 vs. Swiss-Prot
Match: SNE_ARATH (F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-35
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 1


Query: 12  EQNNNKKFK------FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEH 71
           E++NNK+ +      FSINDH D+L EIL+RLD  SLC+AACVCRLW A+A N DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 72  LCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSL 131
           LCFR +S  P  SLR +V ALGGY+ LY LC+RPVL R      LP++   +DQ+Q LSL
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR------LPKLLWTRDQLQ-LSL 130

Query: 132 SLFCVDYYERNDCLGGDLAAAAP-SLRFLCKPLNV 160
           SL+CV YYER   +G  L  A P SL FL KP+NV
Sbjct: 131 SLYCVHYYERL-YVGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Cla015686 vs. Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-12
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 28  DILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPPS--SLRPLVLA 87
           D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR +VL+
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 88  LGGYKRLYLLCLRPVLTR-----LNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNDC 139
           LGG++RL+ + +RP+  R       +    P V   +DQVQ LSLSLF + +++   C
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQ-LSLSLFSIGFFQNMPC 194

[Close]

BLAST of Cla015686 vs. Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 1


Query: 10  DNEQNNNKKFKFSINDHL-------DILTEILKRLDAPSLCAAACVCRLWCALASNDDSL 69
           D     NKK K +  + +       +++ E+LK +DA +L  ++CV ++W   A  D+ L
Sbjct: 13  DAHNETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA-QDERL 72

Query: 70  WEHLCFRHLSS--SPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQV 129
           WE +C RH ++     + LR +VLALGG++RL+ L L P L++ N     PR    +D++
Sbjct: 73  WELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDEL 132

Query: 130 QRLSLSLFCVDYYER 136
            +L+LSL  + YYE+
Sbjct: 133 -KLTLSLLSIRYYEK 139

[Close]

BLAST of Cla015686 vs. TrEMBL
Match: M5WSV2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012743mg PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-46
Identity = 102/156 (65.38%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 7   QQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHL 66
           Q+  + ++  K+ KF INDH+DIL EILKRLD PSL  AACVCRLW  LA N DSLWEHL
Sbjct: 4   QKTPSSEDKEKRPKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTLARN-DSLWEHL 63

Query: 67  CFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLS 126
           CFRH+SS PPSS+RP+V+ALGGYKRLY +C+RPVL+RL+ S L+ RVWT +D+VQ LSLS
Sbjct: 64  CFRHVSSPPPSSVRPVVVALGGYKRLYRVCVRPVLSRLSDSDLVRRVWT-RDEVQ-LSLS 123

Query: 127 LFCVDYYERNDCLGGDLA---AAAPSLRFLCKPLNV 160
           LFCVDYYER+  LGG      A+A SL FLC  +NV
Sbjct: 124 LFCVDYYERSGRLGGGGGGGDASASSLMFLCNTVNV 156

[Close]

BLAST of Cla015686 vs. TrEMBL
Match: B9IAS1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16360g PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.4e-45
Identity = 101/157 (64.33%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 9   EDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCF 68
           EDN +   K+ KF INDH+DIL EILKRLD  SLC +ACVCRLWC +A N DSLWEHLCF
Sbjct: 2   EDNVKE--KRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCF 61

Query: 69  RHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNR------SGLLPRVWTLQDQVQR 128
           RH+S  P S +RP+V+ALGGYKRLY++C+RPVL+RL R      S  + RVWT +D+VQ 
Sbjct: 62  RHVSPPPSSGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVWT-RDEVQ- 121

Query: 129 LSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           LSLSLFCVDYYER   LGG   A+  SL FLCKP+NV
Sbjct: 122 LSLSLFCVDYYERLGRLGGGGDASGSSLMFLCKPVNV 153

[Close]

BLAST of Cla015686 vs. TrEMBL
Match: G7KEM1_MEDTR (F-box SNE-like protein OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-43
Identity = 95/162 (58.64%), Postives = 122/162 (75.31%), Query Frame = 1


Query: 1   MMQRNAQQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDD 60
           M +   +     Q  +K+ KF IND++DIL EILKRLD PSL  A+CVCRLWC L + DD
Sbjct: 9   MQEGTRRTTSRTQQQSKRHKFFINDNIDILREILKRLDGPSLGVASCVCRLWCNLTTKDD 68

Query: 61  SLWEHLCFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLL-PRVWTLQDQ 120
           S+WEHLCFRH+S+ PP+S+RP+V+ALGGYKRLY++C+RPVL+RL  S ++  +VWT + +
Sbjct: 69  SIWEHLCFRHVSTPPPASVRPVVVALGGYKRLYMVCVRPVLSRLGESEMVRKQVWT-RHE 128

Query: 121 VQRLSLSLFCVDYYERNDCLGGDLA--AAAPSLRFLCKPLNV 160
           VQ LSLSLFC+D YER    GG +A  AAA SL FLC P+NV
Sbjct: 129 VQ-LSLSLFCIDSYER--LAGGMVASDAAASSLIFLCNPINV 166

[Close]

BLAST of Cla015686 vs. TrEMBL
Match: A0A059DEL0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01039 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 93/152 (61.18%), Postives = 112/152 (73.68%), Query Frame = 1


Query: 17  KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHLSSSPP 76
           K+ KF INDH+D+L EILKRLD  SLC AACVCRLW ALA N DS+WEHLCFRHLS  PP
Sbjct: 11  KRPKFCINDHVDVLAEILKRLDGRSLCVAACVCRLWSALARN-DSVWEHLCFRHLSPPPP 70

Query: 77  SSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQ-RLSLSLFCVDYYER 136
           SS+RP+V ALGGY+RLY++C+RPVL+RL RS      W ++ + + +LSLSLFCVDYYER
Sbjct: 71  SSVRPVVSALGGYRRLYMVCIRPVLSRLGRSRRAELPWRVRSREELQLSLSLFCVDYYER 130

Query: 137 --------NDCLGGDLAAAAPSLRFLCKPLNV 160
                       G   A+A+ SL FLCKP+NV
Sbjct: 131 LGNGSGGGGSRFGDGSASASSSLMFLCKPVNV 161

[Close]

BLAST of Cla015686 vs. TrEMBL
Match: V4W4N7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016961mg PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 99/161 (61.49%), Postives = 116/161 (72.05%), Query Frame = 1


Query: 12  EQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCFRHL 71
           +Q   KK KF IND +DIL EILKRLD  SLC AACVCRLW  LA ND SLWE LCFRH+
Sbjct: 13  QQQKEKKLKFFINDDIDILIEILKRLDGRSLCVAACVCRLWRTLARND-SLWEELCFRHV 72

Query: 72  SSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGL----LPRVWTLQDQVQRLSLSL 131
           SS PPSS+RP+VLALGGYKRLY++CL+PVL+RL  + L    + R WT +D++Q LSLSL
Sbjct: 73  SSPPPSSVRPVVLALGGYKRLYMVCLQPVLSRLGLAELNSHRVKRTWT-RDELQ-LSLSL 132

Query: 132 FCVDYYER---------NDCLGGDLAAAAPSLRFLCKPLNV 160
           FCVDYYER          D   G+  A+  SL FLCKP+NV
Sbjct: 133 FCVDYYERLGAAAAAGDTDRSLGECDASTSSLMFLCKPVNV 170

[Close]

BLAST of Cla015686 vs. NCBI nr
Match: gi|470135511|ref|XP_004303558.1| (PREDICTED: F-box protein SNE [Fragaria vesca subsp. vesca])

HSP 1 Score: 204.9 bits (520), Expect = 1.0e-49
Identity = 103/153 (67.32%), Postives = 126/153 (82.35%), Query Frame = 1


Query: 7   QQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHL 66
           QQ   E+NN +  +F INDH+DI+ E+LKRLD PSL  AACVCRLWC++A N DSLWEHL
Sbjct: 2   QQSSPEENNIRGPQFCINDHIDIVVEVLKRLDGPSLGVAACVCRLWCSVARN-DSLWEHL 61

Query: 67  CFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLS 126
           CFRH+SS PPSS+RP+V+ALGGYKRLY++C+RPVL+RL+ S L+ RVWT +D+VQ LSLS
Sbjct: 62  CFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRPVLSRLSDSDLVRRVWT-RDEVQ-LSLS 121

Query: 127 LFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           LFCVDYYER   LGG  A+A+ SL FLC P+NV
Sbjct: 122 LFCVDYYERR--LGGGEASASSSLMFLCNPVNV 149

[Close]

BLAST of Cla015686 vs. NCBI nr
Match: gi|1009161181|ref|XP_015898758.1| (PREDICTED: F-box protein SNE [Ziziphus jujuba])

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 104/156 (66.67%), Postives = 120/156 (76.92%), Query Frame = 1


Query: 7   QQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHL 66
           QQ   E    K+ +F INDH+DIL EILKRLD PSL AAACVCRLWCA+  N DSLWEHL
Sbjct: 3   QQNRAEDQKEKRPRFCINDHIDILIEILKRLDGPSLGAAACVCRLWCAITRN-DSLWEHL 62

Query: 67  CFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLS 126
           CFRH+SS PPSS+RP+V+ALGGYKRLY++C+R VL+RL  S L+ RVWT  D+VQ LSLS
Sbjct: 63  CFRHVSSPPPSSVRPVVVALGGYKRLYMVCVRQVLSRLGHSDLVRRVWT-GDEVQ-LSLS 122

Query: 127 LFCVDYYERNDCLGGDLA---AAAPSLRFLCKPLNV 160
           LFCVDYYER     G L    A+A SL FLCKP+NV
Sbjct: 123 LFCVDYYERLGSGSGRLGGGDASASSLMFLCKPVNV 155

[Close]

BLAST of Cla015686 vs. NCBI nr
Match: gi|595927888|ref|XP_007215102.1| (hypothetical protein PRUPE_ppa012743mg [Prunus persica])

HSP 1 Score: 194.1 bits (492), Expect = 1.8e-46
Identity = 102/156 (65.38%), Postives = 122/156 (78.21%), Query Frame = 1


Query: 7   QQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHL 66
           Q+  + ++  K+ KF INDH+DIL EILKRLD PSL  AACVCRLW  LA N DSLWEHL
Sbjct: 4   QKTPSSEDKEKRPKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTLARN-DSLWEHL 63

Query: 67  CFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLS 126
           CFRH+SS PPSS+RP+V+ALGGYKRLY +C+RPVL+RL+ S L+ RVWT +D+VQ LSLS
Sbjct: 64  CFRHVSSPPPSSVRPVVVALGGYKRLYRVCVRPVLSRLSDSDLVRRVWT-RDEVQ-LSLS 123

Query: 127 LFCVDYYERNDCLGGDLA---AAAPSLRFLCKPLNV 160
           LFCVDYYER+  LGG      A+A SL FLC  +NV
Sbjct: 124 LFCVDYYERSGRLGGGGGGGDASASSLMFLCNTVNV 156

[Close]

BLAST of Cla015686 vs. NCBI nr
Match: gi|645247590|ref|XP_008229907.1| (PREDICTED: F-box protein SNE [Prunus mume])

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-46
Identity = 102/158 (64.56%), Postives = 122/158 (77.22%), Query Frame = 1


Query: 7   QQEDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHL 66
           Q+  + ++  K+ KF INDH+DIL EILKRLD PSL  AACVCRLW  LA N DSLWEHL
Sbjct: 15  QKTPSSEDKEKRSKFFINDHIDILVEILKRLDGPSLGVAACVCRLWSTLARN-DSLWEHL 74

Query: 67  CFRHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNRSGLLPRVWTLQDQVQRLSLS 126
           CFRH+SS PPSS+RP+V+ALGGYKRLY +C+RPVL+RL+ S L+ RVWT +D+VQ LSLS
Sbjct: 75  CFRHVSSPPPSSVRPVVVALGGYKRLYRVCVRPVLSRLSDSDLVRRVWT-RDEVQ-LSLS 134

Query: 127 LFCVDYYERNDCL-----GGDLAAAAPSLRFLCKPLNV 160
           LFCVDYYER+  L     GG   A+A SL FLC  +NV
Sbjct: 135 LFCVDYYERSGRLGSGGGGGGGDASASSLMFLCNTVNV 169

[Close]

BLAST of Cla015686 vs. NCBI nr
Match: gi|224131838|ref|XP_002321191.1| (hypothetical protein POPTR_0014s16360g [Populus trichocarpa])

HSP 1 Score: 189.9 bits (481), Expect = 3.4e-45
Identity = 101/157 (64.33%), Postives = 119/157 (75.80%), Query Frame = 1


Query: 9   EDNEQNNNKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALASNDDSLWEHLCF 68
           EDN +   K+ KF INDH+DIL EILKRLD  SLC +ACVCRLWC +A N DSLWEHLCF
Sbjct: 2   EDNVKE--KRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCF 61

Query: 69  RHLSSSPPSSLRPLVLALGGYKRLYLLCLRPVLTRLNR------SGLLPRVWTLQDQVQR 128
           RH+S  P S +RP+V+ALGGYKRLY++C+RPVL+RL R      S  + RVWT +D+VQ 
Sbjct: 62  RHVSPPPSSGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVWT-RDEVQ- 121

Query: 129 LSLSLFCVDYYERNDCLGGDLAAAAPSLRFLCKPLNV 160
           LSLSLFCVDYYER   LGG   A+  SL FLCKP+NV
Sbjct: 122 LSLSLFCVDYYERLGRLGGGGDASGSSLMFLCKPVNV 153

The following BLAST results are available for this feature:

BLAST of Cla015686 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNE_ARATH	1.4e-35	56.77	F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1	[more]
GID2_ORYSJ	8.6e-12	39.83	F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1	[more]
GID2_ARATH	2.5e-11	34.81	F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1	[more]

BLAST of Cla015686 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WSV2_PRUPE	1.3e-46	65.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012743mg PE=4 SV=1	[more]
B9IAS1_POPTR	2.4e-45	64.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16360g PE=4 SV=1	[more]
G7KEM1_MEDTR	1.3e-43	58.64	F-box SNE-like protein OS=Medicago truncatula GN=MTR_5g097150 PE=4 SV=1	[more]
A0A059DEL0_EUCGR	5.0e-43	61.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01039 PE=4 SV=1	[more]
V4W4N7_9ROSI	1.1e-42	61.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016961mg PE=4 SV=1	[more]

BLAST of Cla015686 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470135511\|ref\|XP_004303558.1\|	1.0e-49	67.32	PREDICTED: F-box protein SNE [Fragaria vesca subsp. vesca]	[more]
gi\|1009161181\|ref\|XP_015898758.1\|	1.3e-47	66.67	PREDICTED: F-box protein SNE [Ziziphus jujuba]	[more]
gi\|595927888\|ref\|XP_007215102.1\|	1.8e-46	65.38	hypothetical protein PRUPE_ppa012743mg [Prunus persica]	[more]
gi\|645247590\|ref\|XP_008229907.1\|	3.1e-46	64.56	PREDICTED: F-box protein SNE [Prunus mume]	[more]
gi\|224131838\|ref\|XP_002321191.1\|	3.4e-45	64.33	hypothetical protein POPTR_0014s16360g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
biological_process	GO:0048831	regulation of shoot system development
biological_process	GO:0008150	biological_process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015686	Cla015686.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 28..69 score: 7.2
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 27..65 score: 3.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 28..96 score: 1.96
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 28..93 score: 1.4
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 1..106 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015686	Cla97C02G029300	Watermelon (97103) v2	wmwmbB317
Cla015686	Csa6G111930	Cucumber (Chinese Long) v2	cuwmB516
Cla015686	MELO3C025964	Melon (DHL92) v3.5.1	mewmB110
Cla015686	ClCG02G002810	Watermelon (Charleston Gray)	wcgwmB198
Cla015686	ClCG02G009320	Watermelon (Charleston Gray)	wcgwmB215
Cla015686	Cucsa.120290	Cucumber (Gy14) v1	cgywmB186
Cla015686	CmaCh19G008590	Cucurbita maxima (Rimu)	cmawmB503
Cla015686	CmaCh20G006800	Cucurbita maxima (Rimu)	cmawmB527
Cla015686	CmaCh02G002270	Cucurbita maxima (Rimu)	cmawmB591
Cla015686	CmoCh19G008740	Cucurbita moschata (Rifu)	cmowmB496
Cla015686	Lsi11G013510	Bottle gourd (USVL1VR-Ls)	lsiwmB106
Cla015686	Lsi10G000510	Bottle gourd (USVL1VR-Ls)	lsiwmB080
Cla015686	Cp4.1LG15g06780	Cucurbita pepo (Zucchini)	cpewmB268
Cla015686	Cp4.1LG16g03770	Cucurbita pepo (Zucchini)	cpewmB305
Cla015686	CsGy6G009280	Cucumber (Gy14) v2	cgybwmB484
Cla015686	MELO3C025964.2	Melon (DHL92) v3.6.1	medwmB109
Cla015686	Carg16101	Silver-seed gourd	carwmB0334
Cla015686	Carg05152	Silver-seed gourd	carwmB0809
Cla015686	Carg04149	Silver-seed gourd	carwmB0194
Cla015686	CsaV3_6G009570	Cucumber (Chinese Long) v3	cucwmB541
Cla015686	Bhi10G001022	Wax gourd	wgowmB403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015686	Cucumber (Chinese Long) v2	cuwmB604
Cla015686	Cucurbita pepo (Zucchini)	cpewmB675
Cla015686	Cucumber (Gy14) v2	cgybwmB566
Cla015686	Melon (DHL92) v3.6.1	medwmB233
Cla015686	Silver-seed gourd	carwmB1066
Cla015686	Cucumber (Chinese Long) v3	cucwmB634
Cla015686	Watermelon (97103) v2	wmwmbB333
Cla015686	Wax gourd	wgowmB272
Cla015686	Cucumber (Gy14) v1	cgywmB130
Cla015686	Cucurbita maxima (Rimu)	cmawmB121
Cla015686	Cucurbita moschata (Rifu)	cmowmB117
Cla015686	Cucurbita moschata (Rifu)	cmowmB515
Cla015686	Melon (DHL92) v3.5.1	mewmB241
Cla015686	Watermelon (Charleston Gray)	wcgwmB079