Cp4.1LG15g05850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g05850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein COBRA, putative
LocationCp4.1LG15 : 6611543 .. 6611914 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAGCTTTTGCAACTGAACAAGGGAATTGCTCGTTGTTTAAGTTTGACACTCCACATTCCTGTGAAGGGAGCCCTGTCATTCTTGATCTCATGCCGGAGGCATCGCCCGAAAACCGATCGGAGGGTTGCTGCCGCGGTGGGGTTCTTTCTGCTTGGGCTGTGGACCCTTCCAAGTCTTTCACTTCGTTTGAAATTTCAGTTGGGAGTATGGATGAAGATGGCCATGAGCAACCACCGGCCAATGTTACTCTCATGGCGCCTGGTCTTGGTTACACTTGCAGCCCATTTTTGGACGCTCATCCGACCGTTTCTTCTGTCATTGATGGCAAAAGACAAGTTCAGGTTTTTAGTAAGTACTTTAAATGA

mRNA sequence

ATGAGTGGAGCTTTTGCAACTGAACAAGGGAATTGCTCGTTGTTTAAGTTTGACACTCCACATTCCTGTGAAGGGAGCCCTGTCATTCTTGATCTCATGCCGGAGGCATCGCCCGAAAACCGATCGGAGGGTTGCTGCCGCGGTGGGGTTCTTTCTGCTTGGGCTGTGGACCCTTCCAAGTCTTTCACTTCGTTTGAAATTTCAGTTGGGAGTATGGATGAAGATGGCCATGAGCAACCACCGGCCAATGTTACTCTCATGGCGCCTGGTCTTGGTTACACTTGCAGCCCATTTTTGGACGCTCATCCGACCGTTTCTTCTGTCATTGATGGCAAAAGACAAGTTCAGGTTTTTAGTAAGTACTTTAAATGA

Coding sequence (CDS)

ATGAGTGGAGCTTTTGCAACTGAACAAGGGAATTGCTCGTTGTTTAAGTTTGACACTCCACATTCCTGTGAAGGGAGCCCTGTCATTCTTGATCTCATGCCGGAGGCATCGCCCGAAAACCGATCGGAGGGTTGCTGCCGCGGTGGGGTTCTTTCTGCTTGGGCTGTGGACCCTTCCAAGTCTTTCACTTCGTTTGAAATTTCAGTTGGGAGTATGGATGAAGATGGCCATGAGCAACCACCGGCCAATGTTACTCTCATGGCGCCTGGTCTTGGTTACACTTGCAGCCCATTTTTGGACGCTCATCCGACCGTTTCTTCTGTCATTGATGGCAAAAGACAAGTTCAGGTTTTTAGTAAGTACTTTAAATGA

Protein sequence

MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSKSFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVFSKYFK
Homology
[Close]
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M G  ATEQG+CS FK + PH C+ +P I+DL+P      +   CCRGGV+SAWA DP+ 
Sbjct: 87  MVGGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPAT 146

Query: 61  SFTSFEISVG-SMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + +SF+ISVG S   +   + P N+TL APG GYTC P     P+     D +R+ Q
Sbjct: 147 AISSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQ 203

[Close]
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.2e-22
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+G  ATEQG+CS FK + PH C+  P I+DL+P      +   CC+GGVL++WA DP+ 
Sbjct: 87  MNGGQATEQGDCSKFKSNIPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDPAN 146

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           +  SF++SVG         + P N TL +PG GYTC       PT     DG+R  Q
Sbjct: 147 AIASFQVSVGQAGTTNKTVRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQ 203

[Close]
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M GA  TEQG+CS +K + PH C+  P ++DL+P      +   CC+GGV+++W  DP+ 
Sbjct: 95  MVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPAT 154

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + +SF+ISVG+        + P N TLM PG GYTC P     PT     D +R  Q
Sbjct: 155 AASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQ 211

[Close]
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-21
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+G   TEQG+CS FK   PH C+ +P ++DL+P +    +   CCRGGVL++WA DP+ 
Sbjct: 92  MNGGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPAT 151

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + ++F+++VG         + P N TL APG GYTCSP     PT     D +R  Q
Sbjct: 152 AVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQ 208

[Close]
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-21
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M GA  TEQG+CS FK + PH C+ +P ++DL+P      +   CC+GGV+ AW  DPS 
Sbjct: 79  MVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSA 138

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + + F++S G         + P N TL+ PG GYTC P      TV    D +R+ Q
Sbjct: 139 AVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQ 195

[Close]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match: A0A0A0K2H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009200 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-56
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+GAFATEQGNCSLFKFD PHSCE SPVILDLMPEASPENRSEGCCR GVLSAWAVDPSK
Sbjct: 46  MNGAFATEQGNCSLFKFDIPHSCEDSPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSK 105

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEISVGS DEDG+EQPP N+TLMAPG GYTCSPFLD+ PT+SSVIDGKR+VQVF
Sbjct: 106 SFSSFEISVGSTDEDGNEQPPVNITLMAPGPGYTCSPFLDSSPTISSVIDGKREVQVF 163

[Close]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match: A0A059APZ8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I01370 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.6e-42
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           MSGAFA +QGNCS FKF  PHSC+ +PVILDL+P+ASPENRSE CC GG+LSAWA+DPSK
Sbjct: 87  MSGAFAAQQGNCSSFKFQIPHSCKKNPVILDLIPDASPENRSEDCCHGGLLSAWAIDPSK 146

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEI VG+++       P N+TLMAPG GYTC P +D  PTVSS I G+R+VQVF
Sbjct: 147 SFSSFEIQVGNLEGSSTGHAPLNLTLMAPGPGYTCGPLVDTDPTVSSDIGGRREVQVF 204

[Close]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match: D7U5C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01420 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-38
Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           MSGAFAT+QGNCS F   TPHSC  +PVI+DL P A+PEN +E CC GG+LSAWA+ PS 
Sbjct: 72  MSGAFATQQGNCSSFIVQTPHSCLKNPVIVDLEPTAAPENMTEDCCHGGILSAWAIIPSN 131

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEI VG+++ + H   P N+TLMAPG GYTCSP  D  PTVS VI G+R++QVF
Sbjct: 132 SFSSFEIMVGNLEGNTHGNKPLNLTLMAPGPGYTCSPIEDTDPTVSLVIGGRREIQVF 189

[Close]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match: A0A068TLZ0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014156001 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           MSGAFAT QGNCS FKF TPHSC   P ILD MP+A P+NRS+ CC+GG+L AWA++PSK
Sbjct: 114 MSGAFATHQGNCSSFKFQTPHSCMKYPDILDWMPDALPQNRSDACCKGGILDAWAINPSK 173

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           SF+SFE++VG++  +     P N+TL+APG GYTCSP +D  PTVSSV+ G+R+ Q
Sbjct: 174 SFSSFEMTVGNLGGNPTGYRPLNLTLLAPGPGYTCSPIIDTDPTVSSVVGGRREEQ 229

[Close]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match: B9STE2_RICCO (Protein COBRA, putative OS=Ricinus communis GN=RCOM_0662060 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           MSGAFA  QG+C+ FKF+ PHSC+ +PVI DL+PE  P +RSE CCRGGVL+AWA+DPS 
Sbjct: 70  MSGAFAILQGDCASFKFEKPHSCQPNPVIADLLPETLPASRSEDCCRGGVLAAWAIDPSN 129

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFE+ VG+++ +    PPAN+TL+APG GYTC P L+  PT SS I G+R+VQV+
Sbjct: 130 SFSSFEMKVGNLNINSTVSPPANLTLLAPGPGYTCIPVLETEPTQSSEIGGRRKVQVY 187

[Close]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match: AT3G29810.1 (AT3G29810.1 COBRA-like protein 2 precursor)

HSP 1 Score: 110.2 bits (274), Expect = 9.5e-25
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M G  ATEQG+CS FK + PH C+ +P I+DL+P      +   CCRGGV+SAWA DP+ 
Sbjct: 87  MVGGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPAT 146

Query: 61  SFTSFEISVG-SMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + +SF+ISVG S   +   + P N+TL APG GYTC P     P+     D +R+ Q
Sbjct: 147 AISSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQ 203

[Close]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match: AT5G60920.1 (AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family)

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-23
Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M GA  TEQG+CS +K + PH C+  P ++DL+P      +   CC+GGV+++W  DP+ 
Sbjct: 95  MVGAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPAT 154

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + +SF+ISVG+        + P N TLM PG GYTC P     PT     D +R  Q
Sbjct: 155 AASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQ 211

[Close]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match: AT3G02210.1 (AT3G02210.1 COBRA-like protein 1 precursor)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+G   TEQG+CS FK   PH C+ +P ++DL+P +    +   CCRGGVL++WA DP+ 
Sbjct: 92  MNGGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPAT 151

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + ++F+++VG         + P N TL APG GYTCSP     PT     D +R  Q
Sbjct: 152 AVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQ 208

[Close]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match: AT5G15630.1 (AT5G15630.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family)

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M GA  TEQG+CS FK + PH C+ +P ++DL+P      +   CC+GGV+ AW  DPS 
Sbjct: 79  MVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSA 138

Query: 61  SFTSFEISVGSMDEDGHE-QPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 117
           + + F++S G         + P N TL+ PG GYTC P      TV    D +R+ Q
Sbjct: 139 AVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQ 195

[Close]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match: AT1G09790.1 (AT1G09790.1 COBRA-like protein 6 precursor)

HSP 1 Score: 84.0 bits (206), Expect = 7.3e-17
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKF--DTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDP 60
           M GA  TEQGNCS F    + PH C   P I+DL+P AS   +   CCRGGVL++ + D 
Sbjct: 94  MKGAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDH 153

Query: 61  SKSFTSFEISVGSMDEDGHEQ--PPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQ 120
           +   ++F ++VGS   DG E+   P+N  +  P  GY+C       PT  S   G+R+ Q
Sbjct: 154 ANHVSAFHMTVGS-SPDGPEEFNMPSNFDIGVP--GYSCDNATSVSPTKFSTDKGRRKTQ 213

Query: 121 VFSKY 122
             + +
Sbjct: 214 ALATW 215

[Close]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match: gi|778730050|ref|XP_011659689.1| (PREDICTED: COBRA-like protein 2 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+GAFATEQGNCSLFKFD PHSCE SPVILDLMPEASPENRSEGCCR GVLSAWAVDPSK
Sbjct: 80  MNGAFATEQGNCSLFKFDIPHSCEDSPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSK 139

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEISVGS DEDG+EQPP N+TLMAPG GYTCSPFLD+ PT+SSVIDGKR+VQVF
Sbjct: 140 SFSSFEISVGSTDEDGNEQPPVNITLMAPGPGYTCSPFLDSSPTISSVIDGKREVQVF 197

[Close]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match: gi|700187991|gb|KGN43224.1| (hypothetical protein Csa_7G009200 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+GAFATEQGNCSLFKFD PHSCE SPVILDLMPEASPENRSEGCCR GVLSAWAVDPSK
Sbjct: 46  MNGAFATEQGNCSLFKFDIPHSCEDSPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSK 105

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEISVGS DEDG+EQPP N+TLMAPG GYTCSPFLD+ PT+SSVIDGKR+VQVF
Sbjct: 106 SFSSFEISVGSTDEDGNEQPPVNITLMAPGPGYTCSPFLDSSPTISSVIDGKREVQVF 163

[Close]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match: gi|659094541|ref|XP_008448118.1| (PREDICTED: COBRA-like protein 2 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-53
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M+GAFATEQGNCSLFKFD PHSCE  PVILDLMPEAS  NRSEGCCR GVLSAWAVD SK
Sbjct: 92  MNGAFATEQGNCSLFKFDIPHSCEERPVILDLMPEASLGNRSEGCCRSGVLSAWAVDRSK 151

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEISVGS DEDG+E PPAN+TLMAPG GYTCSPFLD+HPTVSSVIDGKR+VQVF
Sbjct: 152 SFSSFEISVGSKDEDGNELPPANITLMAPGPGYTCSPFLDSHPTVSSVIDGKREVQVF 209

[Close]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match: gi|629089217|gb|KCW55470.1| (hypothetical protein EUGRSUZ_I01370, partial [Eucalyptus grandis])

HSP 1 Score: 178.3 bits (451), Expect = 8.0e-42
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           MSGAFA +QGNCS FKF  PHSC+ +PVILDL+P+ASPENRSE CC GG+LSAWA+DPSK
Sbjct: 87  MSGAFAAQQGNCSSFKFQIPHSCKKNPVILDLIPDASPENRSEDCCHGGLLSAWAIDPSK 146

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEI VG+++       P N+TLMAPG GYTC P +D  PTVSS I G+R+VQVF
Sbjct: 147 SFSSFEIQVGNLEGSSTGHAPLNLTLMAPGPGYTCGPLVDTDPTVSSDIGGRREVQVF 204

[Close]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match: gi|764525561|ref|XP_011457912.1| (PREDICTED: COBRA-like protein 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-40
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1 

Query: 1   MSGAFATEQGNCSLFKFDTPHSCEGSPVILDLMPEASPENRSEGCCRGGVLSAWAVDPSK 60
           M GAFAT+QGNCS FK DT HSC   P ILDLMP++SPEN S GCCRGG+L AWA++PSK
Sbjct: 44  MKGAFATKQGNCSSFKSDTLHSCVKDPEILDLMPDSSPENMSVGCCRGGLLDAWAINPSK 103

Query: 61  SFTSFEISVGSMDEDGHEQPPANVTLMAPGLGYTCSPFLDAHPTVSSVIDGKRQVQVF 119
           SF+SFEI VG++ ++     P N+TLMAPGLGYTC P LD  PTVS  I GKRQVQVF
Sbjct: 104 SFSSFEIKVGNLQQNSFGTAPLNLTLMAPGLGYTCGPLLDVDPTVSLDIGGKRQVQVF 161

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g05850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COBL2_ARATH1.7e-2346.15COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2[more]
COBL1_ORYSJ9.2e-2242.74COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1[more]
COBRA_ARATH1.2e-2141.03Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1[more]
COBL1_ARATH2.7e-2141.88COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1[more]
COBL4_ARATH6.0e-2140.17COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2[more]
BLAST of Cp4.1LG15g05850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2H3_CUCSA1.8e-5688.14Uncharacterized protein OS=Cucumis sativus GN=Csa_7G009200 PE=4 SV=1[more]
A0A059APZ8_EUCGR5.6e-4267.80Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I01370 PE=4 ... [more]
D7U5C3_VITVI3.8e-3863.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01420 PE=4 SV=... [more]
A0A068TLZ0_COFCA1.4e-3762.07Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014156001 PE=4 SV=1[more]
B9STE2_RICCO1.9e-3761.02Protein COBRA, putative OS=Ricinus communis GN=RCOM_0662060 PE=4 SV=1[more]
BLAST of Cp4.1LG15g05850 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G29810.19.5e-2546.15 COBRA-like protein 2 precursor[more]
AT5G60920.16.8e-2341.03 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored pro... [more]
AT3G02210.11.5e-2241.88 COBRA-like protein 1 precursor[more]
AT5G15630.13.4e-2240.17 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored pro... [more]
AT1G09790.17.3e-1738.40 COBRA-like protein 6 precursor[more]
BLAST of Cp4.1LG15g05850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730050|ref|XP_011659689.1|2.6e-5688.14PREDICTED: COBRA-like protein 2 [Cucumis sativus][more]
gi|700187991|gb|KGN43224.1|2.6e-5688.14hypothetical protein Csa_7G009200 [Cucumis sativus][more]
gi|659094541|ref|XP_008448118.1|2.0e-5386.44PREDICTED: COBRA-like protein 2 [Cucumis melo][more]
gi|629089217|gb|KCW55470.1|8.0e-4267.80hypothetical protein EUGRSUZ_I01370, partial [Eucalyptus grandis][more]
gi|764525561|ref|XP_011457912.1|2.0e-4067.80PREDICTED: COBRA-like protein 1 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0031225anchored component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016049cell growth
GO:0010215cellulose microfibril organization
Vocabulary: INTERPRO
TermDefinition
IPR006918COBRA_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0010215 cellulose microfibril organization
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g05850.1Cp4.1LG15g05850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006918COBRA, plantPRODOMPD140986coord: 1..116
score: 5.0
IPR006918COBRA, plantPFAMPF04833COBRAcoord: 1..120
score: 1.6
NoneNo IPR availablePANTHERPTHR31673FAMILY NOT NAMEDcoord: 1..118
score: 5.3
NoneNo IPR availablePANTHERPTHR31673:SF9SUBFAMILY NOT NAMEDcoord: 1..118
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g05850MELO3C029039.2Melon (DHL92) v3.6.1cpemedB262
Cp4.1LG15g05850CsaV3_7G000770Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g05850Bhi05G001500Wax gourdcpewgoB0326
Cp4.1LG15g05850CsGy7G000590Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g05850Carg19367Silver-seed gourdcarcpeB0436
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g05850Cucurbita pepo (Zucchini)cpecpeB110
Cp4.1LG15g05850Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g05850Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g05850Cucurbita pepo (Zucchini)cpecpeB274
Cp4.1LG15g05850Cucurbita pepo (Zucchini)cpecpeB283
Cp4.1LG15g05850Cucumber (Gy14) v1cgycpeB1004
Cp4.1LG15g05850Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g05850Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g05850Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g05850Cucurbita maxima (Rimu)cmacpeB616
Cp4.1LG15g05850Cucurbita maxima (Rimu)cmacpeB772
Cp4.1LG15g05850Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g05850Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g05850Cucurbita moschata (Rifu)cmocpeB513
Cp4.1LG15g05850Cucurbita moschata (Rifu)cmocpeB727
Cp4.1LG15g05850Wild cucumber (PI 183967)cpecpiB259
Cp4.1LG15g05850Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g05850Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g05850Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g05850Watermelon (97103) v1cpewmB250
Cp4.1LG15g05850Watermelon (97103) v1cpewmB268
Cp4.1LG15g05850Melon (DHL92) v3.5.1cpemeB212
Cp4.1LG15g05850Melon (DHL92) v3.5.1cpemeB224
Cp4.1LG15g05850Cucumber (Gy14) v2cgybcpeB185
Cp4.1LG15g05850Cucumber (Gy14) v2cgybcpeB189
Cp4.1LG15g05850Silver-seed gourdcarcpeB0200
Cp4.1LG15g05850Silver-seed gourdcarcpeB1357
Cp4.1LG15g05850Silver-seed gourdcarcpeB1415