Cp4.1LG15g05270 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g05270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG15 : 6156331 .. 6158225 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCCCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTCATGTTGAAGACTGCTAACGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGGTATCGGGTTTTGTTCAGAACGGTTACGACAAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCAGAATTGACAACGCGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTCAGTATAATTGGTGCTTGTGCTAGACAAGCTGCTCTGGCTCCCGGGAAGCAGATACACGGTTACATGCTCCGAGCAGGCATCGAATTCGACGTGAAACTAGCCAGTTCATTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAAAGAATTTTCAGAGAAGTTCTTGACAAGGATTCTATTCTTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGAAGCAGTTCATCTTTTCAAGGAAATGATGGAAAACGATCTCGAACCAGATGCAATCACTTTCATTGCACTACTTTCTGCGTGTCGACACAGCGGTTTAGTCGAACTAGGTGAGCGTTTTTTCGACTCTATGACTAATGATTACAATATTAGTCCCGAAATCGATCATTATGCTTGTATGATCGATTTGTACGGAAGGGCTAATGAACTAGATAAGGCATTGGCATTCATGAAAAGGATTCCCATAGAGTTAGATGCTGTCATATGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGGAATACTGAACTTGCTAGAGAAGCAGAAGAAGAACTGTTGATGATCGAAGGAGAAAACAGCGCTCGGTACGTGCAGTTAGCAAATGTTTATGCTGCAGAAGGGAATTGGGAGGAGATGGGACGAATAAGGAAGAAGATGAAAGGAAAGGATGTTAAGAAGAATGCTGGTTTTAGTTGGGTTTTTGTGGAAAATAAGTTCCATGTGTTCATTTCTGGTGATAGGTTTCACTTACAAAATGAGGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGTTGCTTGCAGTAGAGGAAGCATTTTATTAATATTAAACTTCAGCTATTAGTGCTATACATCTGCCTTTTCTCGAGGTATTTCTTTGAACAAAACTCTCTTTTTGCTATGAAACTGTGTAGCAAACTCATGCTTTAGTTAAATTTGTGATATTGATTCTTAGGTTAGTTCATAG

mRNA sequence

ATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCCCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTCATGTTGAAGACTGCTAACGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGGTATCGGGTTTTGTTCAGAACGGTTACGACAAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCAGAATTGACAACGCGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTTAGTTCATAG

Coding sequence (CDS)

ATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCCCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTCATGTTGAAGACTGCTAACGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGGTATCGGGTTTTGTTCAGAACGGTTACGACAAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTTTACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCAGAATTGACAACGCGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTTAGTTCATAG

Protein sequence

MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFMLKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVLILVSS
Homology
[Close]
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match: PP242_ARATH (Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.8e-88
Identity = 162/307 (52.77%), Postives = 226/307 (73.62%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEM-QTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFM 60
           +LSG+  +DG E++A+ +F EM +   D I ID+F++T M+ L+AKL  + YG+QLH  +
Sbjct: 92  LLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVL 151

Query: 61  LKTANDLSVFAASSLIDMYSKCGCFKEACRVYDG-CGEVIDLVSRNAMVAACCRAGEIDL 120
           +KT ND + FA SSLI MYSKCG FKE C +++G C E +D V+RNAM+AA CR G+ID 
Sbjct: 152 VKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDK 211

Query: 121 AVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACS 180
           A+ +F R  + ND ++WNT+++G+ QNGY++E+LK+ V+M +  ++W+EH+F +VL+  S
Sbjct: 212 ALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLS 271

Query: 181 NLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITS 240
           +LKSLK+GKE+HA VLKNG   N F+ SG+VDVYCKC NM+YAES H      N+YS +S
Sbjct: 272 SLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASS 331

Query: 241 MIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEY-RKEAAVP 300
           MIVGYSSQG MVEA++LFDSL EKN VVWTA+F  Y+  +Q ++V EL   +   E   P
Sbjct: 332 MIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTP 391

Query: 301 DVLILVS 305
           D L++VS
Sbjct: 392 DSLVMVS 398

[Close]
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-35
Identity = 92/277 (33.21%), Postives = 162/277 (58.48%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+ GY +   Y  +A+ +  +M    + I   +F+LT +L   A    +  GK++H+F++
Sbjct: 117 MIVGYKNIGQYH-KAIRVMGDM--VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV 176

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K     +V  ++SL++MY+KCG    A  V+D    V D+ S NAM+A   + G++DLA+
Sbjct: 177 KLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM-VVRDISSWNAMIALHMQVGQMDLAM 236

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMA-DENVRWNEHTFASVLSACSN 180
             F +  +R D+V WN+M+SGF Q GYD  +L +F  M  D  +  +  T ASVLSAC+N
Sbjct: 237 AQFEQMAER-DIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 296

Query: 181 LKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRN--VYSIT 240
           L+ L +GK+IH++++  G  ++  + + L+ +Y +C  +  A  +  +  T++  +   T
Sbjct: 297 LEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFT 356

Query: 241 SMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEY 275
           +++ GY   G+M +A+ +F SL +++ V WTA+   Y
Sbjct: 357 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388

[Close]
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.6e-33
Identity = 94/298 (31.54%), Postives = 152/298 (51.01%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+SG+   D  E +AL  F  M    +   ++E+S   +L+  + L  ++ G Q+H+ + 
Sbjct: 123 MVSGFAQHDRCE-EALCYFAMMHK--EGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 182

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K+     V+  S+L+DMYSKCG   +A RV                              
Sbjct: 183 KSPFLSDVYIGSALVDMYSKCGNVNDAQRV------------------------------ 242

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
             F    DRN VV+WN++++ F QNG   E+L +F  M +  V  +E T ASV+SAC++L
Sbjct: 243 --FDEMGDRN-VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASL 302

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFI-GSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSM 240
            ++K+G+E+H  V+KN  + N  I  +  VD+Y KC+ ++ A  +   +  RNV + TSM
Sbjct: 303 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSM 362

Query: 241 IVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVP 298
           I GY+   +   AR +F  + E+N V W AL   Y ++ + E    L    ++E+  P
Sbjct: 363 ISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384

[Close]
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-32
Identity = 87/259 (33.59%), Postives = 143/259 (55.21%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+SGY++++  + +AL LF EM+      R D  +L  ++N    L  L  GKQ+H    
Sbjct: 290 MISGYIANN-MKMEALVLFNEMRNET---REDSRTLAAVINACIGLGFLETGKQMHCHAC 349

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K      +  AS+L+DMYSKCG   EAC+++    E  D +  N+M+      G ID A 
Sbjct: 350 KFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEV-ESYDTILLNSMIKVYFSCGRIDDAK 409

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
            +F R  +++ +++WN+M +GF QNG   E+L+ F  M   ++  +E + +SV+SAC+++
Sbjct: 410 RVFERIENKS-LISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASI 469

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
            SL+LG+++ A     GL  +  + S L+D+YCKC  + +   V   +   +     SMI
Sbjct: 470 SSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMI 529

Query: 241 VGYSSQGNMVEARKLFDSL 260
            GY++ G   EA  LF  +
Sbjct: 530 SGYATNGQGFEAIDLFKKM 542

[Close]
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.4e-32
Identity = 83/249 (33.33%), Postives = 132/249 (53.01%), Query Frame = 1 

Query: 49  LSYGKQLHTFMLKTA-NDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMV 108
           L  GK +H  +  T     +   ++ LI MY KCG   +AC+V+D    + +L S N MV
Sbjct: 62  LKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-HLRNLYSWNNMV 121

Query: 109 AACCRAGEIDLAVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNE 168
           +   ++G +  A  +F       DVV+WNTMV G+ Q+G   E+L  +       +++NE
Sbjct: 122 SGYVKSGMLVRARVVFD-SMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNE 181

Query: 169 HTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSE 228
            +FA +L+AC   + L+L ++ H  VL  G + N  +   ++D Y KC  M  A+    E
Sbjct: 182 FSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDE 241

Query: 229 LTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELL 288
           +T ++++  T++I GY+  G+M  A KLF  + EKN V WTAL   YV+        +L 
Sbjct: 242 MTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDL- 301

Query: 289 SEYRKEAAV 297
             +RK  A+
Sbjct: 302 --FRKMIAL 305

[Close]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match: A0A0A0K940_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G253760 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 2.4e-142
Identity = 256/304 (84.21%), Postives = 277/304 (91.12%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGY  SDGY+ QALG F+EMQTAPDMIRIDEF+L  MLNLTAKLCV+SYGKQLH+FML
Sbjct: 91  MLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFML 150

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTANDL+VFAASSLIDMYSKCG FKEACRVY GCGEV+D VSRNAMVAACCR GEID+A+
Sbjct: 151 KTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVAL 210

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF +E ++NDVVAWNTM+SGFVQNGY++ESLKLFV MADE V WNEHTFASVLSACSNL
Sbjct: 211 DLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNL 270

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLKLGKE+HAYVLKN LI NPFI SGLVDVYCKCNNMRYA+SV+SEL  +NVYSITSMI
Sbjct: 271 RSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMI 330

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVL 300
           VGYSSQGNM EARKLFDSLDEKNS VWTALF  YVK QQ EAVFELLSEYRKEA VPDVL
Sbjct: 331 VGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVL 390

Query: 301 ILVS 305
           IL+S
Sbjct: 391 ILIS 394

[Close]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match: D7TPY7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02230 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 4.5e-117
Identity = 209/305 (68.52%), Postives = 259/305 (84.92%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGY+++DGYE  AL LF+EMQ+  D  RIDEFSLT MLNL+AKL + SYGKQLH++M+
Sbjct: 91  MLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMV 150

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTAN++S FA SSLIDMYSKCGCF+E C+V+DGC  V+DLVS+NAMVAACCR GE+++ V
Sbjct: 151 KTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAACCREGELEMGV 210

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           +LF R+ + NDVV+WNT++SG+VQNG ++++LKLFV+M +  VRWNEHT A +LSAC+ L
Sbjct: 211 NLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAGL 270

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLKLGKE+H +VLK  L  NPFI SGLVDVYCKC NM+YAE V++ + T N +SITSMI
Sbjct: 271 RSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSMI 330

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYR-KEAAVPDV 300
           VG+SSQGNM EAR+LFDSL EK+S++WTALFT YVKSQQ EAVFELLSE+R KEA VPD 
Sbjct: 331 VGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPDA 390

Query: 301 LILVS 305
           LIL+S
Sbjct: 391 LILIS 395

[Close]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match: A0A061E1R3_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_007296 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 199/305 (65.25%), Postives = 246/305 (80.66%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTA-PDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFM 60
           MLSGYVS+DG E  A+ LF +MQ A  D I+IDEF++T ML+L+AKL  LSYG QLH FM
Sbjct: 480 MLSGYVSADGSETHAVKLFYDMQAACDDKIKIDEFTVTTMLSLSAKLTNLSYGAQLHCFM 539

Query: 61  LKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLA 120
           +KT N+ + FA SSLIDMYSKCGCFKEA +VY G G ++DLVS+NAMVAA CR GE+++A
Sbjct: 540 VKTGNNKTGFAVSSLIDMYSKCGCFKEAFQVYKGGGGLVDLVSKNAMVAAFCREGEMEMA 599

Query: 121 VDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSN 180
           ++LF +E + ND V+WNT++SG+ Q+GY +ESLKLFV M +  VRWNEHTF SVLSACS 
Sbjct: 600 LELFWKEPELNDAVSWNTLISGYQQHGYIEESLKLFVRMGENGVRWNEHTFTSVLSACSI 659

Query: 181 LKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSM 240
           LK+LK GKE+H +VLKNGL +NPF+ SG+VDVYCKC  M+YAE +H      N +S+TSM
Sbjct: 660 LKNLKAGKEVHGWVLKNGLSLNPFVSSGIVDVYCKCGQMKYAELMHLGSGRSNTFSVTSM 719

Query: 241 IVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEY-RKEAAVPD 300
           IVGYSSQGNMVEAR+LFDS DEKNSVVWTALF+ Y+KSQ  +AVF+LL E+  KEA +PD
Sbjct: 720 IVGYSSQGNMVEARRLFDSFDEKNSVVWTALFSGYLKSQNCDAVFQLLGEFWEKEATIPD 779

Query: 301 VLILV 304
            LIL+
Sbjct: 780 GLILM 784

[Close]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match: B9RZB6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0937540 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 9.4e-107
Identity = 198/305 (64.92%), Postives = 239/305 (78.36%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGYV  DG E+ AL LF EM      + IDEFSLT M+ L AKL +L +G+Q+H++M+
Sbjct: 565 MLSGYVRVDGCESYALDLFKEMPRNRSKVGIDEFSLTTMVKLFAKLSMLCHGRQVHSYMV 624

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTAND S FA SSLIDMYSKCGCFK A  V+ GC  V+DLVS+NAMVAACCR GE+DLA+
Sbjct: 625 KTANDKSGFAVSSLIDMYSKCGCFKAALEVFKGCERVVDLVSKNAMVAACCREGEMDLAL 684

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
            LF RE + ND V+WNT++SG+VQNGY  ES K FV M D  V WNEHTFAS+LSACS L
Sbjct: 685 KLFWRENELNDTVSWNTLISGYVQNGYAVESFKSFVRMMDNGVMWNEHTFASLLSACSGL 744

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           ++LKLGKEIHA VLKNG+  NP+I SG++DVYCKC N++YAES++      + +S +SMI
Sbjct: 745 RNLKLGKEIHACVLKNGMDSNPYIESGIIDVYCKCGNVKYAESIYLGSRIGSPFSTSSMI 804

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYR-KEAAVPDV 300
           VGYS QGNM EAR+LFDSL+EKN++VWTALFT YVK Q  EA+FEL SE+R KEA VPD 
Sbjct: 805 VGYSLQGNMAEARRLFDSLEEKNAIVWTALFTGYVKLQHCEAIFELFSEFRSKEAMVPDS 864

Query: 301 LILVS 305
           LIL+S
Sbjct: 865 LILIS 869

[Close]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match: B9H0N2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15870g PE=4 SV=2)

HSP 1 Score: 392.5 bits (1007), Expect = 4.7e-106
Identity = 195/308 (63.31%), Postives = 246/308 (79.87%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGYVS DGYE  AL LFVEMQ+  + I ID+ ++T M+NL +KLC   YG+QLH++M+
Sbjct: 91  MLSGYVSVDGYERNALELFVEMQSKRNEIEIDDLTITSMVNLFSKLCNSCYGRQLHSYMV 150

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEV--IDLVSRNAMVAACCRAGEIDL 120
           KT ND S F  SSLIDMYSKCGCFKEAC+V+ GC      DLVS+NAMVAA CR G++++
Sbjct: 151 KTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVAAYCREGDMEM 210

Query: 121 AVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACS 180
           A+ LF RE + ND V+WNT++SG+VQNGY  E+LKLFV M +  V+WNEHT  SVLSAC+
Sbjct: 211 ALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTLGSVLSACA 270

Query: 181 NLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITS 240
           +L++LK+GKE+HA++LKNGL  + F+ SG+VDVYCKC NM+YAES+H     R+ +SITS
Sbjct: 271 DLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTRGVRSSFSITS 330

Query: 241 MIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEY-RKEAAVP 300
           MIVGYSSQGNMVEA +LFDSL+EKNS+VW ALF+ YVK +Q EA FELL EY  KEAA+P
Sbjct: 331 MIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREYIAKEAAIP 390

Query: 301 DVLILVSS 306
           D LIL+++
Sbjct: 391 DALILINA 398

[Close]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match: AT3G18840.2 (AT3G18840.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-89
Identity = 162/307 (52.77%), Postives = 226/307 (73.62%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEM-QTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFM 60
           +LSG+  +DG E++A+ +F EM +   D I ID+F++T M+ L+AKL  + YG+QLH  +
Sbjct: 92  LLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVL 151

Query: 61  LKTANDLSVFAASSLIDMYSKCGCFKEACRVYDG-CGEVIDLVSRNAMVAACCRAGEIDL 120
           +KT ND + FA SSLI MYSKCG FKE C +++G C E +D V+RNAM+AA CR G+ID 
Sbjct: 152 VKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDK 211

Query: 121 AVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACS 180
           A+ +F R  + ND ++WNT+++G+ QNGY++E+LK+ V+M +  ++W+EH+F +VL+  S
Sbjct: 212 ALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLS 271

Query: 181 NLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITS 240
           +LKSLK+GKE+HA VLKNG   N F+ SG+VDVYCKC NM+YAES H      N+YS +S
Sbjct: 272 SLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASS 331

Query: 241 MIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEY-RKEAAVP 300
           MIVGYSSQG MVEA++LFDSL EKN VVWTA+F  Y+  +Q ++V EL   +   E   P
Sbjct: 332 MIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTP 391

Query: 301 DVLILVS 305
           D L++VS
Sbjct: 392 DSLVMVS 398

[Close]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-36
Identity = 92/277 (33.21%), Postives = 162/277 (58.48%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+ GY +   Y  +A+ +  +M    + I   +F+LT +L   A    +  GK++H+F++
Sbjct: 117 MIVGYKNIGQYH-KAIRVMGDM--VKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV 176

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K     +V  ++SL++MY+KCG    A  V+D    V D+ S NAM+A   + G++DLA+
Sbjct: 177 KLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM-VVRDISSWNAMIALHMQVGQMDLAM 236

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMA-DENVRWNEHTFASVLSACSN 180
             F +  +R D+V WN+M+SGF Q GYD  +L +F  M  D  +  +  T ASVLSAC+N
Sbjct: 237 AQFEQMAER-DIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 296

Query: 181 LKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRN--VYSIT 240
           L+ L +GK+IH++++  G  ++  + + L+ +Y +C  +  A  +  +  T++  +   T
Sbjct: 297 LEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFT 356

Query: 241 SMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEY 275
           +++ GY   G+M +A+ +F SL +++ V WTA+   Y
Sbjct: 357 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388

[Close]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match: AT2G13600.1 (AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 4.3e-34
Identity = 94/298 (31.54%), Postives = 152/298 (51.01%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+SG+   D  E +AL  F  M    +   ++E+S   +L+  + L  ++ G Q+H+ + 
Sbjct: 123 MVSGFAQHDRCE-EALCYFAMMHK--EGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 182

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K+     V+  S+L+DMYSKCG   +A RV                              
Sbjct: 183 KSPFLSDVYIGSALVDMYSKCGNVNDAQRV------------------------------ 242

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
             F    DRN VV+WN++++ F QNG   E+L +F  M +  V  +E T ASV+SAC++L
Sbjct: 243 --FDEMGDRN-VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASL 302

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFI-GSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSM 240
            ++K+G+E+H  V+KN  + N  I  +  VD+Y KC+ ++ A  +   +  RNV + TSM
Sbjct: 303 SAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSM 362

Query: 241 IVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVP 298
           I GY+   +   AR +F  + E+N V W AL   Y ++ + E    L    ++E+  P
Sbjct: 363 ISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384

[Close]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match: AT1G77010.1 (AT1G77010.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 7.3e-34
Identity = 87/259 (33.59%), Postives = 143/259 (55.21%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           M+SGY++++  + +AL LF EM+      R D  +L  ++N    L  L  GKQ+H    
Sbjct: 290 MISGYIANN-MKMEALVLFNEMRNET---REDSRTLAAVINACIGLGFLETGKQMHCHAC 349

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           K      +  AS+L+DMYSKCG   EAC+++    E  D +  N+M+      G ID A 
Sbjct: 350 KFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEV-ESYDTILLNSMIKVYFSCGRIDDAK 409

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
            +F R  +++ +++WN+M +GF QNG   E+L+ F  M   ++  +E + +SV+SAC+++
Sbjct: 410 RVFERIENKS-LISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASI 469

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
            SL+LG+++ A     GL  +  + S L+D+YCKC  + +   V   +   +     SMI
Sbjct: 470 SSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMI 529

Query: 241 VGYSSQGNMVEARKLFDSL 260
            GY++ G   EA  LF  +
Sbjct: 530 SGYATNGQGFEAIDLFKKM 542

[Close]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match: AT2G21090.1 (AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-33
Identity = 83/249 (33.33%), Postives = 132/249 (53.01%), Query Frame = 1 

Query: 49  LSYGKQLHTFMLKTA-NDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMV 108
           L  GK +H  +  T     +   ++ LI MY KCG   +AC+V+D    + +L S N MV
Sbjct: 62  LKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM-HLRNLYSWNNMV 121

Query: 109 AACCRAGEIDLAVDLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNE 168
           +   ++G +  A  +F       DVV+WNTMV G+ Q+G   E+L  +       +++NE
Sbjct: 122 SGYVKSGMLVRARVVFD-SMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNE 181

Query: 169 HTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSE 228
            +FA +L+AC   + L+L ++ H  VL  G + N  +   ++D Y KC  M  A+    E
Sbjct: 182 FSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDE 241

Query: 229 LTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELL 288
           +T ++++  T++I GY+  G+M  A KLF  + EKN V WTAL   YV+        +L 
Sbjct: 242 MTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDL- 301

Query: 289 SEYRKEAAV 297
             +RK  A+
Sbjct: 302 --FRKMIAL 305

[Close]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match: gi|659092415|ref|XP_008447050.1| (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g18840 [Cucumis melo])

HSP 1 Score: 521.2 bits (1341), Expect = 1.3e-144
Identity = 261/304 (85.86%), Postives = 278/304 (91.45%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGY  SDGYE +ALG F+EMQTAPDMIRIDEFSL IMLNLTAKLCV+SYGKQLH+FML
Sbjct: 515 MLSGYARSDGYEGKALGFFMEMQTAPDMIRIDEFSLIIMLNLTAKLCVISYGKQLHSFML 574

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTANDLSVFAASSLIDMYSKCG FKEACRVY GCGEV+D VSRNAMVAACCR GEID+A+
Sbjct: 575 KTANDLSVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVAL 634

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF +E ++NDVVAWNTM+SGFVQNGY++ESLKLFV MADE V WNEHTFASVLSACSNL
Sbjct: 635 DLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNL 694

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLKLGKE+H YVLKN LI NPFI SGLVDVYCKCNNMRYAESVHSEL  +NVYSITSMI
Sbjct: 695 RSLKLGKEVHTYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVHSELRMQNVYSITSMI 754

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVL 300
           VGYSSQGNM EARKLFDSLDEKNSVVWTALF  YVK QQ EAVFELLSEYRKEA VPDVL
Sbjct: 755 VGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVL 814

Query: 301 ILVS 305
           IL+S
Sbjct: 815 ILIS 818

[Close]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match: gi|778726166|ref|XP_011659068.1| (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g18840 [Cucumis sativus])

HSP 1 Score: 513.1 bits (1320), Expect = 3.4e-142
Identity = 256/304 (84.21%), Postives = 277/304 (91.12%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGY  SDGY+ QALG F+EMQTAPDMIRIDEF+L  MLNLTAKLCV+SYGKQLH+FML
Sbjct: 515 MLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFML 574

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTANDL+VFAASSLIDMYSKCG FKEACRVY GCGEV+D VSRNAMVAACCR GEID+A+
Sbjct: 575 KTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVAL 634

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF +E ++NDVVAWNTM+SGFVQNGY++ESLKLFV MADE V WNEHTFASVLSACSNL
Sbjct: 635 DLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNL 694

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLKLGKE+HAYVLKN LI NPFI SGLVDVYCKCNNMRYA+SV+SEL  +NVYSITSMI
Sbjct: 695 RSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMI 754

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVL 300
           VGYSSQGNM EARKLFDSLDEKNS VWTALF  YVK QQ EAVFELLSEYRKEA VPDVL
Sbjct: 755 VGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVL 814

Query: 301 ILVS 305
           IL+S
Sbjct: 815 ILIS 818

[Close]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match: gi|700189088|gb|KGN44321.1| (hypothetical protein Csa_7G253760 [Cucumis sativus])

HSP 1 Score: 513.1 bits (1320), Expect = 3.4e-142
Identity = 256/304 (84.21%), Postives = 277/304 (91.12%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGY  SDGY+ QALG F+EMQTAPDMIRIDEF+L  MLNLTAKLCV+SYGKQLH+FML
Sbjct: 91  MLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFML 150

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KTANDL+VFAASSLIDMYSKCG FKEACRVY GCGEV+D VSRNAMVAACCR GEID+A+
Sbjct: 151 KTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVAL 210

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF +E ++NDVVAWNTM+SGFVQNGY++ESLKLFV MADE V WNEHTFASVLSACSNL
Sbjct: 211 DLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNL 270

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLKLGKE+HAYVLKN LI NPFI SGLVDVYCKCNNMRYA+SV+SEL  +NVYSITSMI
Sbjct: 271 RSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMI 330

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVL 300
           VGYSSQGNM EARKLFDSLDEKNS VWTALF  YVK QQ EAVFELLSEYRKEA VPDVL
Sbjct: 331 VGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVL 390

Query: 301 ILVS 305
           IL+S
Sbjct: 391 ILIS 394

[Close]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match: gi|1009171684|ref|XP_015866871.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840 [Ziziphus jujuba])

HSP 1 Score: 432.6 bits (1111), Expect = 5.9e-118
Identity = 211/305 (69.18%), Postives = 260/305 (85.25%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGYV+ DG+E +A+ LF EMQ++PD +RIDEFSL  MLNL AKL V++YG+QLH+FM+
Sbjct: 446 MLSGYVNEDGFETKAMELFREMQSSPDNVRIDEFSLNTMLNLIAKLAVVTYGRQLHSFMV 505

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KT N  S FA SSLIDMYSKCGCF+EA +V+ GC EVID VS+NAMVAACCR GE+++A+
Sbjct: 506 KTGNFSSGFAVSSLIDMYSKCGCFQEARQVFHGCDEVIDPVSKNAMVAACCREGELEMAI 565

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF RE + ND V+WNT++SGF QNGY++ESLKLF +M++   RWNEHTF+SVLSAC+ L
Sbjct: 566 DLFQRESELNDTVSWNTLISGFAQNGYEEESLKLFGHMSESGCRWNEHTFSSVLSACAGL 625

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +S K+GKEIHA+VLK+GL +NPFI SG+VDVYCKC NMRYAESVH+ +  RN +SITSMI
Sbjct: 626 RSFKVGKEIHAFVLKSGLTLNPFISSGIVDVYCKCGNMRYAESVHAGMGIRNSFSITSMI 685

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYR-KEAAVPDV 300
           +G+SSQGNMV+AR+LFDSL EK+SVVWTALF  YVKS Q EAVFELLSE+R KE+ VP+ 
Sbjct: 686 LGHSSQGNMVKARQLFDSLVEKSSVVWTALFCGYVKSHQCEAVFELLSEFREKESIVPEA 745

Query: 301 LILVS 305
           LIL+S
Sbjct: 746 LILIS 750

[Close]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match: gi|1009171961|ref|XP_015867019.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840 [Ziziphus jujuba])

HSP 1 Score: 431.0 bits (1107), Expect = 1.7e-117
Identity = 211/305 (69.18%), Postives = 258/305 (84.59%), Query Frame = 1 

Query: 1   MLSGYVSSDGYEAQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFML 60
           MLSGYV+ DG+E +A+ LF EMQ++PD +RIDEFSLT MLN  AKL V++YG+QLH+FM+
Sbjct: 91  MLSGYVNEDGFETKAMELFREMQSSPDNVRIDEFSLTTMLNFIAKLAVVTYGRQLHSFMV 150

Query: 61  KTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAV 120
           KT N  S FA SSL+DMYSKCGCF+EA +V+ G  EVID VS+NAMVAACCR GE+++A+
Sbjct: 151 KTGNFSSGFAVSSLVDMYSKCGCFQEARQVFHGSDEVIDPVSKNAMVAACCREGELEMAI 210

Query: 121 DLFSRERDRNDVVAWNTMVSGFVQNGYDKESLKLFVNMADENVRWNEHTFASVLSACSNL 180
           DLF RE + ND  +WNT++SGF QNGY++ESLKLF +MA+   RWNEHTF+SVLSAC+ L
Sbjct: 211 DLFQRESELNDTASWNTLISGFAQNGYEEESLKLFGHMAESGCRWNEHTFSSVLSACAGL 270

Query: 181 KSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMI 240
           +SLK+GKEIHA+VLKNG  +NPFI SG+VDVYCKC NMRYAESVH+ +  RN +SITSMI
Sbjct: 271 RSLKVGKEIHAFVLKNGSTLNPFISSGIVDVYCKCGNMRYAESVHAGMGIRNSFSITSMI 330

Query: 241 VGYSSQGNMVEARKLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYR-KEAAVPDV 300
           VG+SSQGNMV+AR+LFDSL EK+SVVWTALF  YVKS Q EAVFELLSE+R KE+ VP+ 
Sbjct: 331 VGHSSQGNMVKARQLFDSLAEKSSVVWTALFCGYVKSHQCEAVFELLSEFREKESIVPEA 390

Query: 301 LILVS 305
           LIL+S
Sbjct: 391 LILIS 395

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g05270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP242_ARATH2.8e-8852.77Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis th... [more]
PP168_ARATH2.8e-3533.21Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN... [more]
PP151_ARATH7.6e-3331.54Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN... [more]
PP127_ARATH1.3e-3233.59Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS... [more]
PP167_ARATH6.4e-3233.33Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG15g05270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K940_CUCSA2.4e-14284.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G253760 PE=4 SV=1[more]
D7TPY7_VITVI4.5e-11768.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02230 PE=4 SV=... [more]
A0A061E1R3_THECC1.1e-10765.25Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0072... [more]
B9RZB6_RICCO9.4e-10764.92Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
B9H0N2_POPTR4.7e-10663.31Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15870g PE=4 SV=2[more]
BLAST of Cp4.1LG15g05270 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18840.21.6e-8952.77 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G22070.11.6e-3633.21 pentatricopeptide (PPR) repeat-containing protein[more]
AT2G13600.14.3e-3431.54 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G77010.17.3e-3433.59 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G21090.13.6e-3333.33 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of Cp4.1LG15g05270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092415|ref|XP_008447050.1|1.3e-14485.86PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
gi|778726166|ref|XP_011659068.1|3.4e-14284.21PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
gi|700189088|gb|KGN44321.1|3.4e-14284.21hypothetical protein Csa_7G253760 [Cucumis sativus][more]
gi|1009171684|ref|XP_015866871.1|5.9e-11869.18PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840 [Zizip... [more]
gi|1009171961|ref|XP_015867019.1|1.7e-11769.18PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840 [Zizip... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g05270.1Cp4.1LG15g05270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 237..263
score: 6.5E-4coord: 72..92
score: 0.015coord: 101..124
score: 0.0016coord: 208..232
score:
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 131..178
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 234..263
score: 4.8E-4coord: 133..166
score: 7.1E-4coord: 104..124
score: 7.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 131..165
score: 9.767coord: 1..25
score: 5.305coord: 201..231
score: 6.226coord: 99..129
score: 8.769coord: 267..297
score: 5.119coord: 166..200
score: 7.202coord: 232..266
score: 8.758coord: 67..97
score:
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..95
score: 4.7E-173coord: 129..304
score: 4.7E
NoneNo IPR availablePANTHERPTHR24015:SF714SUBFAMILY NOT NAMEDcoord: 1..95
score: 4.7E-173coord: 129..304
score: 4.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g05270Cucsa.240300Cucumber (Gy14) v1cgycpeB0639
Cp4.1LG15g05270Cla015952Watermelon (97103) v1cpewmB268
Cp4.1LG15g05270Csa7G253760Cucumber (Chinese Long) v2cpecuB260
Cp4.1LG15g05270MELO3C012561Melon (DHL92) v3.5.1cpemeB224
Cp4.1LG15g05270ClCG02G005230Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g05270CSPI07G11330Wild cucumber (PI 183967)cpecpiB261
Cp4.1LG15g05270Lsi11G010720Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g05270MELO3C012561.2Melon (DHL92) v3.6.1cpemedB262
Cp4.1LG15g05270CsaV3_7G023290Cucumber (Chinese Long) v3cpecucB0325
Cp4.1LG15g05270Bhi05G001060Wax gourdcpewgoB0316
Cp4.1LG15g05270CsGy7G010670Cucumber (Gy14) v2cgybcpeB913
Cp4.1LG15g05270Carg22028Silver-seed gourdcarcpeB0295
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g05270Silver-seed gourdcarcpeB1241
Cp4.1LG15g05270Cucumber (Chinese Long) v3cpecucB0289
Cp4.1LG15g05270Wax gourdcpewgoB0338
Cp4.1LG15g05270Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g05270Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG15g05270Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG15g05270Cucurbita pepo (Zucchini)cpecpeB274
Cp4.1LG15g05270Cucumber (Gy14) v1cgycpeB0245
Cp4.1LG15g05270Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g05270Cucurbita maxima (Rimu)cmacpeB561
Cp4.1LG15g05270Cucurbita maxima (Rimu)cmacpeB616
Cp4.1LG15g05270Cucurbita moschata (Rifu)cmocpeB095
Cp4.1LG15g05270Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g05270Cucurbita moschata (Rifu)cmocpeB514
Cp4.1LG15g05270Cucurbita moschata (Rifu)cmocpeB566
Cp4.1LG15g05270Wild cucumber (PI 183967)cpecpiB236
Cp4.1LG15g05270Cucumber (Chinese Long) v2cpecuB232
Cp4.1LG15g05270Bottle gourd (USVL1VR-Ls)cpelsiB195
Cp4.1LG15g05270Cucumber (Gy14) v2cgybcpeB185