Cp4.1LG15g03880 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g03880
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMethylmalonate-semialdehyde dehydrogenase
LocationCp4.1LG15 : 5089964 .. 5092328 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTCTCCATAGCTCTCGTGTGCGAGTGTGCTCGTCTTCAATCGGCGCCGGAGAAAAATGTTGCAGTTCTCGATTCGGCGAGGTAAAGTTCTTTGATCGTAAAGGAATTTGTTTCTGATTTTCGAATTTGTTAATGGAAGTTACTTCTTGATTACGTTCGTGATCATTTTGTAGTGAAGAAATCGAGTGTTCTGAGGCCTTAGATCTTTGCTCTTGGAAATTATCGTTTCTCCACCTCTGCTGAACCGTCTTCCAAGCCTAATCCTCCGGTGAGGAAGCGGTTGTTTCTTTAATTTTGTTTTTATTTTCTTTTGAGTAGAGATTGTTGATTTCTTGAGCTTGTGGTTTGAATGAGGAACTTTGTTTGCATTGTTTGGTTTCTGAGAAAACGTCAGGACAGGACGTGGAAAGTATGAGCTATGCTATTCTTTCTACGGTCCCAAATTTGCTTCGTTTTTGTGTTTGTAATTGTTTCTTGTAGAGACTGGCCTTCACTGCGTTAATTTCTGATTTGAAATAGTCTTCTTAACTTCTTGAAGTTTAGGAATTACTCTGTAGGTTGAAAGAAAGGGGAAATTTCCTGAAATTTTTTTTAGCTTGATCACCAATGTAGTTTGTCTTTCAATTCATGACCATGATATCATATATAATGTCAGCGCATACTTGTTTCATCTAGCATTGTTACGAAAGGCTGATATATACTTCATTTACGCAAGCCTTCTCAATCCTCAGCATTCATAGATGTCATAAACCTAGTGAGTTACCAGATCATTTTTACGCACTCTTTTCTATTTCCGATTTGAGAAAGTTAAGTTCCTTTAGGTACGGGTACGAAAATGTGCTTTTGTTTATAGGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAATGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGGTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGTAAGTTCGTTTTTCAGTAAAAGGAATATTCCAAATTCACTTCAAAAGTGGATTTTCCCCCCTCTCATTTCAGGACAAACTTGCTCTAAATTTTACAACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATCCCGTGGGATAGGTTATAATCCTTTAGTTCCTTCCTCTCCCTGTATATGCTTATGATTATGTGATGGAAAAATTCGTTTTATCATATGGCCTGAGCTGAATGTTCGATAGAAAATTGAAATGATTTATCTTATGTAGAGGTTGTGGAACATGCATGTGGAATATGCATCGCTGCAAATGGGGTAGTATGTCTCTAATGTGTCACATGGAATTGATACCTGCAGCATCATAGAGCCTCTTTGTGTTTGTGCTGGGATTTGTCCTTTCAATTTTCCTGCCATGATCTCCCTATGGGTTAGCCTGTTATTCTTCACTGTCATTCCAATGGTTATAATTTCAGCAGTAAAGAATTAGTTTGATTTCTCAACGGCTGGAGTACGCTCGTTATCTACTTCTTTTGTGGTGTAAAAGACTTGCTGCTATGAAAGATTTTTATCCCCCAAAAATTAATTATGAAGTATTTTCTTCATTCCATACTGATATTATCCCTCCAATTAGCTTTTCTTTTTCTTATGATAATAGACTGATAGTGGCAATAGTTGTGCCATGGGATAATCCTCTGCAGATGTTCCCAATTTCTGTTACATGTGGGAATACCTTTATTTTGAAGTCTTCAGAAAAAGATCCAGGTGATTTTTGTTTTTGAATTATTCCCCAAGCATCTTTATTATGAACTGTCTTCTTTTTGTTTTTGCAAGCTCATACCTATGATTAGATTCTGGAACCATATCCACTAGATTCAACTGCTATCTTAAATGACTTGATTTGACTGCAGCATCAACAAATTGTTATTTGAATTTTGGTGTTTTTTCTGCAGGATGTTGTTAATGCCATTTGTGACGATGAAGATATAAAGGCAATATCATTCGTTGGTTCAAACATTGTAAGGTATCTTTACTGAAATAACTTTTACTTCATGGAGTTGGCAATCTCAATACATTCTAGGTTAATTTCTACAACTGGTTCTTGTTGCAACATACTAAAATTCTATTATAGGATAGGGCCCTTTCCACTTTTTGTTTTTAGAATCTAGATCTGATAGTTTAGATATTTGTTCATGTGGCCATTGGAGTTTTACAAGTTATTTAATTGGTGAAACATCCTCTTACATTGGGACCTTGGCATTCTTTACTTGGTCTACCATTGGTACAAAGTGATTTAAGTTTAGCTTTGTGGTTTTATTGTTGCAGATGACTGGTTTCAATATTAA

mRNA sequence

ATGAATCTCTCCATAGCTCTCGTGTGCGAGTGTGCTCGTCTTCAATCGGCGCCGGAGAAAAATGTTGCAGTTCTCGATTCGGCGAGGTACGGGTACGAAAATGTGCTTTTGTTTATAGGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAATGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGGTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGACAAACTTGCTCTAAATTTTACAACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATCCCGTGGGATAGAGGTTGTGGAACATGCATGTGGAATATGCATCGCTGCAAATGGGGTAGATGTTGTTAATGCCATTTGTGACGATGAAGATATAAAGGCAATATCATTCGTTGGTTCAAACATTGTAAGGTATCTTTACTGAAATAACTTTTACTTCATGGAGTTGGCAATCTCAATACATTCTAGGTTAATTTCTACAACTGGTTCTTGTTGCAACATACTAAAATTCTATTATAGGATAGGGCCCTTTCCACTTTTTGTTTTTAGAATCTAGATCTGATAGTTTAGATATTTGTTCATGTGGCCATTGGAGTTTTACAAGTTATTTAATTGGTGAAACATCCTCTTACATTGGGACCTTGGCATTCTTTACTTGGTCTACCATTGGTACAAAGTGATTTAAGTTTAGCTTTGTGGTTTTATTGTTGCAGATGACTGGTTTCAATATTAA

Coding sequence (CDS)

ATGAATCTCTCCATAGCTCTCGTGTGCGAGTGTGCTCGTCTTCAATCGGCGCCGGAGAAAAATGTTGCAGTTCTCGATTCGGCGAGGTACGGGTACGAAAATGTGCTTTTGTTTATAGGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAATGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGGTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGACAAACTTGCTCTAAATTTTACAACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATCCCGTGGGATAGAGGTTGTGGAACATGCATGTGGAATATGCATCGCTGCAAATGGGGTAGATGTTGTTAATGCCATTTGTGACGATGAAGATATAAAGGCAATATCATTCGTTGGTTCAAACATTGTAAGGTATCTTTACTGA

Protein sequence

MNLSIALVCECARLQSAPEKNVAVLDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVNAICDDEDIKAISFVGSNIVRYLY
Homology
[Close]
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match: MMSA_ARATH (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 7.3e-35
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 41  KEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFT 100
           +EVVS+VPLTTNEEFKAAVSAA QAFP WRNTP+TTRQR+M+K QEL+R+++DKLA+N T
Sbjct: 139 QEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMNIT 198

Query: 101 TEQGKTLKDAHGDVSRGIEVVEHACGICI---------AANGVD 136
           TEQGKTLKD+HGD+ RG+EVVEHACG+            +NGVD
Sbjct: 199 TEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVD 242

[Close]
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match: MMSA_CAEEL (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Caenorhabditis elegans GN=alh-8 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 42  EVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFTT 101
           EV++ VP  T  E +AAV +A  AF  W+NT   TRQ+ M KLQ L++RD+ KLA + T 
Sbjct: 56  EVIAMVPNATQAEMQAAVDSAKNAFNTWKNTSPLTRQQCMFKLQALIKRDMKKLAESITI 115

Query: 102 EQGKTLKDAHGDVSRGIEVVEHACGI 128
           EQGKTL DA GDVSRG++VVEHAC +
Sbjct: 116 EQGKTLPDAEGDVSRGLQVVEHACSV 141

[Close]
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match: MMSA_DICDI (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 41  KEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFT 100
           +E+V++VP++T EE +AAV AA  AFPAWR+T V+ R RI+   + L+ +++DK+A   T
Sbjct: 55  QELVTKVPVSTKEEMEAAVKAASDAFPAWRDTSVSNRSRIISNYKNLINKNMDKIAAIIT 114

Query: 101 TEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
            EQGKTL DA GDV RG+EVVEH+  +     G  V N
Sbjct: 115 EEQGKTLPDAKGDVFRGLEVVEHSVNVASLMMGETVEN 152

[Close]
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match: MMSA_RAT (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus norvegicus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 42  EVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFTT 101
           EVV +VP +T  E +AAV+A  +AFPAW +T + +RQ+++++ Q+L++ ++ ++A   T 
Sbjct: 66  EVVGRVPQSTKAEMEAAVAACKRAFPAWADTSILSRQQVLLRYQQLIKENLKEIARLITL 125

Query: 102 EQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVNAICDDEDI 147
           EQGKTL DA GDV RG++VVEHAC +     G + + +I  D D+
Sbjct: 126 EQGKTLADAEGDVFRGLQVVEHACSVTSLMLG-ETMPSITKDMDL 169

[Close]
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match: MMSA_ANOGA (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Anopheles gambiae GN=AGAP002499 PE=3 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1 

Query: 42  EVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFTT 101
           EVV++VP  T +E + AV ++ +A+  WR + + +RQ++M+KLQ ++R ++ +LA N T 
Sbjct: 53  EVVTRVPKCTQDEMQTAVESSKKAYKTWRQSSILSRQQVMLKLQHIIRNNMSELAKNITK 112

Query: 102 EQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVNAICD 143
           EQGKTL DA GDV RG++VVEH C I     G  V N   D
Sbjct: 113 EQGKTLIDAEGDVLRGLQVVEHCCSITSLQMGETVPNIAKD 153

[Close]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match: A0A0A0K654_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066830 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.5e-36
Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPL+TN+EFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 51  VDSQSSAFIDVINPATQEVVSQVPLSTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 110

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+RRDIDKLALN TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 111 QELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSN 164

[Close]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match: W9SA81_9ROSA (Aldehyde dehydrogenase family 6 member B2 OS=Morus notabilis GN=L484_014786 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-35
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPLTTNEEF AAVSAA QAFP+WRNTPVTTRQRIM KL
Sbjct: 473 VDSQSSAFIDVINPATQEVVSQVPLTTNEEFIAAVSAAKQAFPSWRNTPVTTRQRIMFKL 532

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+RRDIDKLA+N TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 533 QELIRRDIDKLAVNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSN 586

[Close]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match: D7TFV8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0132g00200 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-35
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    ++VVSQ+PLT+NEEFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 52  VDSQSSEFIDVINPATQQVVSQIPLTSNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 111

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           Q+L+RRDIDKLA+N TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 112 QQLIRRDIDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEFVPN 165

[Close]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match: E5GCR9_CUCME (Methylmalonate-semialdehyde dehydrogenase OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPLTT +EFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 51  VDSQSSAFIDVINPATQEVVSQVPLTTKDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 110

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+ RDIDKLALN TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 111 QELISRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSN 164

[Close]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match: A0A067E000_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0094071mg PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = 1 

Query: 23  AVLDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMV 82
           A ++S    Y +V+    +EVVSQ+PLTTNEEFKAAVSAA QAFP+WRNTP+TTRQR+M+
Sbjct: 48  AFIESRSSEYIDVINPATQEVVSQLPLTTNEEFKAAVSAAKQAFPSWRNTPITTRQRVML 107

Query: 83  KLQELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           KLQEL+RRDIDKLA+N TTEQGKTLKDA GDV RG+EVVEH+CG+     G  V N
Sbjct: 108 KLQELIRRDIDKLAMNITTEQGKTLKDAQGDVFRGLEVVEHSCGMATLQMGEYVPN 163

[Close]
BLAST of Cp4.1LG15g03880 vs. TAIR10
Match: AT2G14170.1 (AT2G14170.1 aldehyde dehydrogenase 6B2)

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-36
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 1 

Query: 41  KEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKLQELVRRDIDKLALNFT 100
           +EVVS+VPLTTNEEFKAAVSAA QAFP WRNTP+TTRQR+M+K QEL+R+++DKLA+N T
Sbjct: 139 QEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMNIT 198

Query: 101 TEQGKTLKDAHGDVSRGIEVVEHACGICI---------AANGVD 136
           TEQGKTLKD+HGD+ RG+EVVEHACG+            +NGVD
Sbjct: 199 TEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVD 242

[Close]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match: gi|778724596|ref|XP_011658836.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating])

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPL+TN+EFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 51  VDSQSSAFIDVINPATQEVVSQVPLSTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 110

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+RRDIDKLALN TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 111 QELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSN 164

[Close]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match: gi|778724599|ref|XP_011658837.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating])

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPL+TN+EFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 51  VDSQSSAFIDVINPATQEVVSQVPLSTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 110

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+RRDIDKLALN TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 111 QELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSN 164

[Close]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match: gi|703159438|ref|XP_010112249.1| (Aldehyde dehydrogenase family 6 member B2 [Morus notabilis])

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    +EVVSQVPLTTNEEF AAVSAA QAFP+WRNTPVTTRQRIM KL
Sbjct: 473 VDSQSSAFIDVINPATQEVVSQVPLTTNEEFIAAVSAAKQAFPSWRNTPVTTRQRIMFKL 532

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           QEL+RRDIDKLA+N TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 533 QELIRRDIDKLAVNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSN 586

[Close]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match: gi|225429271|ref|XP_002266390.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 25  LDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMVKL 84
           +DS    + +V+    ++VVSQ+PLT+NEEFKAAVSAA QAFPAWRNTPVTTRQRIM KL
Sbjct: 52  VDSQSSEFIDVINPATQQVVSQIPLTSNEEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKL 111

Query: 85  QELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           Q+L+RRDIDKLA+N TTEQGKTLKDAHGDV RG+EVVEHACG+     G  V N
Sbjct: 112 QQLIRRDIDKLAMNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEFVPN 165

[Close]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match: gi|568868912|ref|XP_006487690.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating])

HSP 1 Score: 156.8 bits (395), Expect = 3.3e-35
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1 

Query: 23  AVLDSARYGYENVLLFIGKEVVSQVPLTTNEEFKAAVSAAMQAFPAWRNTPVTTRQRIMV 82
           A ++S    Y +V+    +EVVSQ+PLTTNEEFKAAVSAA QAFP+WRNTP+TTRQR+M+
Sbjct: 48  AFIESRSSEYIDVINPATQEVVSQLPLTTNEEFKAAVSAAKQAFPSWRNTPITTRQRVML 107

Query: 83  KLQELVRRDIDKLALNFTTEQGKTLKDAHGDVSRGIEVVEHACGICIAANGVDVVN 139
           KLQEL+RRDIDKLA+N TTEQGKTLKDA GDV RG+EVVEHACG+     G  V N
Sbjct: 108 KLQELIRRDIDKLAMNITTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVPN 163

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g03880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MMSA_ARATH7.3e-3569.23Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidop... [more]
MMSA_CAEEL1.3e-2056.98Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS... [more]
MMSA_DICDI1.1e-1950.00Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS... [more]
MMSA_RAT1.2e-1843.81Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus n... [more]
MMSA_ANOGA1.6e-1845.54Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS... [more]
BLAST of Cp4.1LG15g03880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K654_CUCSA3.5e-3672.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066830 PE=3 SV=1[more]
W9SA81_9ROSA1.7e-3571.93Aldehyde dehydrogenase family 6 member B2 OS=Morus notabilis GN=L484_014786 PE=3... [more]
D7TFV8_VITVI2.3e-3570.18Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0132g00200 PE=3 SV=... [more]
E5GCR9_CUCME3.0e-3571.93Methylmalonate-semialdehyde dehydrogenase OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A067E000_CITSI5.1e-3568.10Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0094071mg PE=3 ... [more]
BLAST of Cp4.1LG15g03880 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14170.14.1e-3669.23 aldehyde dehydrogenase 6B2[more]
BLAST of Cp4.1LG15g03880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778724596|ref|XP_011658836.1|5.0e-3672.81PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating][more]
gi|778724599|ref|XP_011658837.1|5.0e-3672.81PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating][more]
gi|703159438|ref|XP_010112249.1|2.5e-3571.93Aldehyde dehydrogenase family 6 member B2 [Morus notabilis][more]
gi|225429271|ref|XP_002266390.1|3.3e-3570.18PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating][more]
gi|568868912|ref|XP_006487690.1|3.3e-3568.97PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR016162Ald_DH_N
IPR016161Ald_DH/histidinol_DH
IPR015590Aldehyde_DH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006020 inositol metabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006574 valine catabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity
molecular_function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g03880.1Cp4.1LG15g03880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015590Aldehyde dehydrogenase domainPFAMPF00171Aldedhcoord: 41..128
score: 6.7
IPR016161Aldehyde/histidinol dehydrogenaseunknownSSF53720ALDH-likecoord: 41..155
score: 6.22
IPR016162Aldehyde dehydrogenase N-terminal domainGENE3DG3DSA:3.40.605.10coord: 41..131
score: 3.4
NoneNo IPR availablePANTHERPTHR11699ALDEHYDE DEHYDROGENASE-RELATEDcoord: 42..127
score: 4.4
NoneNo IPR availablePANTHERPTHR11699:SF163SUBFAMILY NOT NAMEDcoord: 42..127
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g03880CmaCh19G004890Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g03880CmoCh19G005070Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g03880Cla012937Watermelon (97103) v1cpewmB237
Cp4.1LG15g03880ClCG09G016250Watermelon (Charleston Gray)cpewcgB218
Cp4.1LG15g03880MELO3C018583.2Melon (DHL92) v3.6.1cpemedB263
Cp4.1LG15g03880CsaV3_7G007110Cucumber (Chinese Long) v3cpecucB0323
Cp4.1LG15g03880Bhi05G000787Wax gourdcpewgoB0317
Cp4.1LG15g03880CsGy7G005790Cucumber (Gy14) v2cgybcpeB911
Cp4.1LG15g03880Carg23062Silver-seed gourdcarcpeB1031
Cp4.1LG15g03880Carg22798Silver-seed gourdcarcpeB0401
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g03880Cp4.1LG04g07270Cucurbita pepo (Zucchini)cpecpeB269
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g03880Wax gourdcpewgoB0311
Cp4.1LG15g03880Cucurbita pepo (Zucchini)cpecpeB111
Cp4.1LG15g03880Cucurbita pepo (Zucchini)cpecpeB260
Cp4.1LG15g03880Cucumber (Gy14) v1cgycpeB0594
Cp4.1LG15g03880Cucurbita maxima (Rimu)cmacpeB116
Cp4.1LG15g03880Cucurbita maxima (Rimu)cmacpeB719
Cp4.1LG15g03880Cucurbita moschata (Rifu)cmocpeB095
Cp4.1LG15g03880Cucurbita moschata (Rifu)cmocpeB672
Cp4.1LG15g03880Wild cucumber (PI 183967)cpecpiB258
Cp4.1LG15g03880Cucumber (Chinese Long) v2cpecuB258
Cp4.1LG15g03880Bottle gourd (USVL1VR-Ls)cpelsiB207
Cp4.1LG15g03880Bottle gourd (USVL1VR-Ls)cpelsiB208
Cp4.1LG15g03880Watermelon (Charleston Gray)cpewcgB223
Cp4.1LG15g03880Watermelon (Charleston Gray)cpewcgB228
Cp4.1LG15g03880Watermelon (97103) v1cpewmB242
Cp4.1LG15g03880Watermelon (97103) v1cpewmB248
Cp4.1LG15g03880Melon (DHL92) v3.5.1cpemeB225
Cp4.1LG15g03880Melon (DHL92) v3.5.1cpemeB242
Cp4.1LG15g03880Melon (DHL92) v3.6.1cpemedB286
Cp4.1LG15g03880Silver-seed gourdcarcpeB0526