CmaCh19G004890 (gene) Cucurbita maxima (Rimu)

NameCmaCh19G004890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMethylmalonate-semialdehyde dehydrogenase family protein
LocationCma_Chr19 : 5820483 .. 5821293 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAACTTTGTTTGCATTGTTTTGTTTCTGAGAAAACGTCAGGACAGGGCGTGGAAAGTATGAACTATGCTATTCTTTCTACGGTCCCAACTTTGCTTCGTTTTTGTGTTTGTAATTGTTTCTTGTAGAGACTGGCCTTCACTGCGTTAATTTCTGATTTGATTCTTAACTTCTTTAAGTTTAGGAATTACTCTGTAGGTTGAAAGAAAGGGGAAATTTTCCTGTAAATTATTTTAGCTTAATCACCAATGTAGTTTGTCTTTCAATTCATGACCATGATATCATATATAATGTCAGCGCATACTTGTTTCATCTAGCGTTGTTACGAAAGGCTGATATATACTTCATTTACGCAAGCCTTCTCAATCCTCAGCATTCATAGATGTCATAAACCTAGTGAGTTACCAGCTCATTTTACGCACTCTTTTCTATTTCAGATTTGAGAAAGTTAAGTTCCTTTAGGTACGGGTACGAAAATGTGCTTTTGTTTACAGGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAACGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTTGCCAACGAATTATGCTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGTAAGTTCGTTTTTCAGTAAAAGGAATATTCCAAATCACTTCAAAAGTGGATCCCCCCCTCTCATTTCAGGACACACTTTCTCTAAATATTACAACAGAACAAGGAAAGACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGGTTATAA

mRNA sequence

ATGAGGAACTTTGTTTGCATTGTTTTGTTTCTGAGAAAACGTCAGGACAGGGCGTGGAAAAGACTGGCCTTCACTGCGTTAATTTCTGATTTGATTCTTAACTTCTTTAAGTTTAGGAATTACTCTCGTTGTTACGAAAGGCTGATATATACTTCATTTACGCAAGCCTTCTCAATCCTCAGCATTCATAGATGTCATAAACCTAGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAACGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTTGCCAACGAATTATGCTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGTAAGTTCGTTTTTCAGTAAAAGGAATATTCCAAATCACTTCAAAAGTGGATCCCCCCCTCTCATTTCAGGACACACTTTCTCTAAATATTACAACAGAACAAGGAAAGACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGGTTATAA

Coding sequence (CDS)

ATGAGGAACTTTGTTTGCATTGTTTTGTTTCTGAGAAAACGTCAGGACAGGGCGTGGAAAAGACTGGCCTTCACTGCGTTAATTTCTGATTTGATTCTTAACTTCTTTAAGTTTAGGAATTACTCTCGTTGTTACGAAAGGCTGATATATACTTCATTTACGCAAGCCTTCTCAATCCTCAGCATTCATAGATGTCATAAACCTAGCAAGGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGAGGAATTTAAAGCTGCAGTATCTGCAGCAACGCAGGCATTTCCTGCTTGGCGTAATACTCCAGTTACAACTTGCCAACGAATTATGCTCAAGCTTCAAGAACTCGTTAGGCGAGATATCGTAAGTTCGTTTTTCAGTAAAAGGAATATTCCAAATCACTTCAAAAGTGGATCCCCCCCTCTCATTTCAGGACACACTTTCTCTAAATATTACAACAGAACAAGGAAAGACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGGTTATAA

Protein sequence

MRNFVCIVLFLRKRQDRAWKRLAFTALISDLILNFFKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAFPAWRNTPVTTCQRIMLKLQELVRRDIVSSFFSKRNIPNHFKSGSPPLISGHTFSKYYNRTRKDIKGCTWRCIPWARL
BLAST of CmaCh19G004890 vs. Swiss-Prot
Match: MMSA_ARATH (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-17
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1

Query: 48  LIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAFPAWRNTPVTTCQ 107
           LI  SF ++ S   I   +  ++EVVS+VPLTTNEEFKAAVSAA QAFP WRNTP+TT Q
Sbjct: 117 LIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQ 176

Query: 108 RIMLKLQELVRRDI 122
           R+MLK QEL+R+++
Sbjct: 177 RVMLKFQELIRKNM 190

BLAST of CmaCh19G004890 vs. Swiss-Prot
Match: MMSA_DICDI (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.6e-06
Identity = 23/53 (43.40%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 69  SKEVVSQVPLTTNEEFKAAVSAATQAFPAWRNTPVTTCQRIMLKLQELVRRDI 122
           ++E+V++VP++T EE +AAV AA+ AFPAWR+T V+   RI+   + L+ +++
Sbjct: 54  TQELVTKVPVSTKEEMEAAVKAASDAFPAWRDTSVSNRSRIISNYKNLINKNM 106

BLAST of CmaCh19G004890 vs. Swiss-Prot
Match: MMSA_RAT (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus norvegicus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.9e-06
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 1

Query: 66  HKPS-KEVVSQVPLTTNEEFKAAVSAATQAFPAWRNTPVTTCQRIMLKLQELVRRDI 122
           H P+  EVV +VP +T  E +AAV+A  +AFPAW +T + + Q+++L+ Q+L++ ++
Sbjct: 60  HNPATNEVVGRVPQSTKAEMEAAVAACKRAFPAWADTSILSRQQVLLRYQQLIKENL 116

BLAST of CmaCh19G004890 vs. TrEMBL
Match: A0A164VR78_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021901 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-18
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1

Query: 37  KFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAFP 96
           K RN  R  + L+  SF  + S+ SI   +  ++EVVSQVPLTTNEEFKAAVS+A QAFP
Sbjct: 36  KNRNSLRV-QNLVGGSFIDSQSVESIDVLNPATQEVVSQVPLTTNEEFKAAVSSAKQAFP 95

Query: 97  AWRNTPVTTCQRIMLKLQELVRRDI 122
           AWRNTP+TT QR+MLKLQEL+RRD+
Sbjct: 96  AWRNTPITTRQRVMLKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. TrEMBL
Match: A0A0D2SLX1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G226800 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 35  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 94

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 95  PSWRNTPITTRQRIMFKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. TrEMBL
Match: A0A0D2NH48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G226800 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 35  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 94

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 95  PSWRNTPITTRQRIMFKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. TrEMBL
Match: A0A0B0N9C8_GOSAR (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Gossypium arboreum GN=F383_11863 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.7e-17
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 36  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 95

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 96  PSWRNTPITTRQRIMFKLQELIRRDM 120

BLAST of CmaCh19G004890 vs. TrEMBL
Match: V4RQV5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028171mg PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1

Query: 35  FFKFRNYSRCYER---------LIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFK 94
           F KF   ++ Y +         LI  +F ++ S   I   +  ++EVVSQ+PLTTNEEFK
Sbjct: 22  FAKFSTDAKLYSKQHNPPRVPNLIGGAFIESRSSECIDVINPATQEVVSQLPLTTNEEFK 81

Query: 95  AAVSAATQAFPAWRNTPVTTCQRIMLKLQELVRRDI 122
           AAVSAA QAFP+WRNTP+TT QR+MLKLQEL+RRDI
Sbjct: 82  AAVSAAKQAFPSWRNTPITTRQRVMLKLQELIRRDI 117

BLAST of CmaCh19G004890 vs. TAIR10
Match: AT2G14170.1 (AT2G14170.1 aldehyde dehydrogenase 6B2)

HSP 1 Score: 88.2 bits (217), Expect = 5.4e-18
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1

Query: 48  LIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAFPAWRNTPVTTCQ 107
           LI  SF ++ S   I   +  ++EVVS+VPLTTNEEFKAAVSAA QAFP WRNTP+TT Q
Sbjct: 117 LIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQ 176

Query: 108 RIMLKLQELVRRDI 122
           R+MLK QEL+R+++
Sbjct: 177 RVMLKFQELIRKNM 190

BLAST of CmaCh19G004890 vs. NCBI nr
Match: gi|1021032950|gb|KZM90734.1| (hypothetical protein DCAR_021901 [Daucus carota subsp. sativus])

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-18
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1

Query: 37  KFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAFP 96
           K RN  R  + L+  SF  + S+ SI   +  ++EVVSQVPLTTNEEFKAAVS+A QAFP
Sbjct: 36  KNRNSLRV-QNLVGGSFIDSQSVESIDVLNPATQEVVSQVPLTTNEEFKAAVSSAKQAFP 95

Query: 97  AWRNTPVTTCQRIMLKLQELVRRDI 122
           AWRNTP+TT QR+MLKLQEL+RRD+
Sbjct: 96  AWRNTPITTRQRVMLKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. NCBI nr
Match: gi|823160453|ref|XP_012480069.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 35  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 94

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 95  PSWRNTPITTRQRIMFKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. NCBI nr
Match: gi|728829799|gb|KHG09242.1| (Methylmalonate semialdehyde dehydrogenase [acylating])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 36  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 95

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 96  PSWRNTPITTRQRIMFKLQELIRRDM 120

BLAST of CmaCh19G004890 vs. NCBI nr
Match: gi|763764892|gb|KJB32146.1| (hypothetical protein B456_005G226800 [Gossypium raimondii])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 36  FKFRNYSRCYERLIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFKAAVSAATQAF 95
           F  RN SR    LI  +F  + S  +I   +  ++EVVSQ+PLTTNEEFKAAV+AA QAF
Sbjct: 35  FNHRNPSRV-PNLIGGAFVDSKSTSTIDVINPATQEVVSQIPLTTNEEFKAAVAAAKQAF 94

Query: 96  PAWRNTPVTTCQRIMLKLQELVRRDI 122
           P+WRNTP+TT QRIM KLQEL+RRD+
Sbjct: 95  PSWRNTPITTRQRIMFKLQELIRRDM 119

BLAST of CmaCh19G004890 vs. NCBI nr
Match: gi|567861978|ref|XP_006423643.1| (hypothetical protein CICLE_v10028171mg [Citrus clementina])

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-16
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1

Query: 35  FFKFRNYSRCYER---------LIYTSFTQAFSILSIHRCHKPSKEVVSQVPLTTNEEFK 94
           F KF   ++ Y +         LI  +F ++ S   I   +  ++EVVSQ+PLTTNEEFK
Sbjct: 22  FAKFSTDAKLYSKQHNPPRVPNLIGGAFIESRSSECIDVINPATQEVVSQLPLTTNEEFK 81

Query: 95  AAVSAATQAFPAWRNTPVTTCQRIMLKLQELVRRDI 122
           AAVSAA QAFP+WRNTP+TT QR+MLKLQEL+RRDI
Sbjct: 82  AAVSAAKQAFPSWRNTPITTRQRVMLKLQELIRRDI 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MMSA_ARATH9.6e-1762.16Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidop... [more]
MMSA_DICDI7.6e-0643.40Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS... [more]
MMSA_RAT9.9e-0640.35Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus n... [more]
Match NameE-valueIdentityDescription
A0A164VR78_DAUCA6.0e-1863.53Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021901 PE=4 SV=1[more]
A0A0D2SLX1_GOSRA8.7e-1760.47Uncharacterized protein OS=Gossypium raimondii GN=B456_005G226800 PE=3 SV=1[more]
A0A0D2NH48_GOSRA8.7e-1760.47Uncharacterized protein OS=Gossypium raimondii GN=B456_005G226800 PE=3 SV=1[more]
A0A0B0N9C8_GOSAR8.7e-1760.47Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Gossypium arboreum GN... [more]
V4RQV5_9ROSI2.5e-1655.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028171mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G14170.15.4e-1862.16 aldehyde dehydrogenase 6B2[more]
Match NameE-valueIdentityDescription
gi|1021032950|gb|KZM90734.1|8.7e-1863.53hypothetical protein DCAR_021901 [Daucus carota subsp. sativus][more]
gi|823160453|ref|XP_012480069.1|1.2e-1660.47PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating][more]
gi|728829799|gb|KHG09242.1|1.2e-1660.47Methylmalonate semialdehyde dehydrogenase [acylating][more]
gi|763764892|gb|KJB32146.1|1.2e-1660.47hypothetical protein B456_005G226800 [Gossypium raimondii][more]
gi|567861978|ref|XP_006423643.1|3.6e-1655.21hypothetical protein CICLE_v10028171mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015590Aldehyde_DH_dom
IPR016161Ald_DH/histidinol_DH
IPR016162Ald_DH_N
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008152 metabolic process
biological_process GO:0006020 inositol metabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006574 valine catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G004890.1CmaCh19G004890.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015590Aldehyde dehydrogenase domainPFAMPF00171Aldedhcoord: 66..120
score: 2.
IPR016161Aldehyde/histidinol dehydrogenaseunknownSSF53720ALDH-likecoord: 62..120
score: 1.4
IPR016162Aldehyde dehydrogenase N-terminal domainGENE3DG3DSA:3.40.605.10coord: 66..120
score: 2.5
NoneNo IPR availablePANTHERPTHR11699ALDEHYDE DEHYDROGENASE-RELATEDcoord: 71..121
score: 6.5
NoneNo IPR availablePANTHERPTHR11699:SF163SUBFAMILY NOT NAMEDcoord: 71..121
score: 6.5

The following gene(s) are paralogous to this gene:

None