Cp4.1LG15g00370 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAATGAACATTCATAGTATCGGTAAGTATCATTAAAAGCGATAATATCGTTAATATCGTTCAACTAGTTCGGAATTTGGTCTGTATCCACTTTCCAATTTGACCATTTAATTTTTCACCTTTACATTAGCGAAGTGGTATAATGGCCATGGCAAAATGATTGGCCGTTATCATACATCATCTATCTGATAGCTAAAAGAGCTGATTCTCATCTTCACACGGTCCAGCTCAAAATTCTTCGATTCCATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGTTAGTCATTTGTGATATACTCACAACCCAGGGAACTCGAAATGAGTGGTGGTTAACTAACTGTCTGTATGTTTTGGGATGTTTTTTTAGGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGTTTGTCAATTCTGCTACCTTCTCACTCTTTCTGGTGGATTGTTCTTGATAGGGTTCTTGTTTTGTTGATATCAATCCACCTTTAAAGGAACAGTAAACATAATCTTGCTTTTAAACATAGAATCTATTTATGAAGATTACCCTTTTTTACAGAGATTTCAGTAAAGTAAAGGAATTTTGTGAAATCCCACATCGGTTGGGGAGGAGACTGAAACACCCTTTATAAGATTGTGAAAACCTCTCCCGAGCAGATGCGTTTTAAAAACTATGAGGGTAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTAGGCTTGGGCCATTACAAATGGTATCAGAGTCACACTGGGTGATGTGCCAGCGAGGAGGCTGTTCTCCGAAGGAGGTAGACACGAGGCGGTGTGCCAGCAAGGACGCTGGTCCCGAAGGGGGTAGACACGAGGTGGTGTGCCAGCAAAGACGCTGGTCCCGAAGGGGGGTGGATTTGGTGGGGGTCCCACATCGGTTAGGAGGAGAACGAAACACCCTCTATAAGGGTGTGGAAACCTCTCCCTAGTATACGCGTTTTAAAAACCTCGAGGGAAAGCCTAAAGAGGACAATATTTACCAGGGTGGGCTTGGGCTTGGGCTTGGGCTGTTACAGATTTAAACCCTTAATCTGCTAGAATCATGCTGGAAATCAATCTAAGCTGCCATTTGGCCTATATTTTGACACAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGTAAACATTACAGTGATCCTATCAGCATAGTAGATAGATAGAAGGCAGACACTTACAGAAGGCTAATAAATCTGCATCATTACTATGACAGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGTAAGAGCATACATATTTATAAACATTTCTAACCTTGATTGATGAGCTCATGGACTTGATAAATTCTCGATGCAGGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGGTGAGTAAAAGGAAATAGTTTCTTTGATGCTTTAGGGGTAAACATAGAAGATTCAGAATTTACCTATTGTTTTTTGCAGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGACCGTTCTTCGGATAATCGTGCACGACGGTACTGTCCATCTTACAGTACATCTACATGTATTCTCATTTATTGTACTTCTATCAACTTAACCAAATAACGTGAGATTCAGAAGTGAAGTAATTGAGCTTTCACTTCTGTTACCCCATTTCTGATTTTTGCATTAACAGAAGATAACAAAGAACACTCTAGTTCTGATTCATTCCTAGTGAAAATATATCCATTTTTTTGCCAGAATTATAAAAAGCCAAGACAATGTACAATGTGCAAAAACTTAGGACCAGCCTGATAAAGATATTTGAAGTAAAGCATTATGAATTTCATTAGGGATACAAATGTCGGTTAACCAAAAAGATCGTTTTAATTACACGAGTAATATAAGAACATATAATACATTGCTTCACAAGTTAATCAGACTCCTTGCCATTCATGATGGACTCCAATTTTGTGCTTCCCACGACTTCGCAAGTCGAAAAGCAATATAGACATCATGAATCTTTTTCCATCAGTTGAAAGTTTCTAATAATTCTACACCAGGTGGTTTTAATCATTTATATGAATTGTATGAGTGAGAAGCTGAAATTCTGACCTTCAAGCAAAGCATCATCCAACAGCATTACCTAGGAGGCCTCTCCAAAGCAATCCAACCAAACTTTCCTTTGCGGAAATCTGATAAGATGCGGAAAGCTGCTTGATGACTGTCCCCGTTGAACAATTGAAGTGCTAACTTTTGAACAAATCTGTCACCAACAATTTGTTTTACGCGTATAATAATAATACTAAACTAGAAATGAAAAGTTATTGATTAGCATATGATACGTACGTGTGACCACATTGACCGTCTGCATCGACTTTATATCGCTTTTGAAGTAATTCTATACCTG CAAATGAACATTCATAGTATCGGTAAGTATCATTAAAAGCGATAATATCGTTAATATCGTTCAACTAGTTCGGAATTTGGTCTGTATCCACTTTCCAATTTGACCATTTAATTTTTCACCTTTACATTAGCGAAGTGGTATAATGGCCATGGCAAAATGATTGGCCGTTATCATACATCATCTATCTGATAGCTAAAAGAGCTGATTCTCATCTTCACACGGTCCAGCTCAAAATTCTTCGATTCCATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGACCGTTCTTCGGATAATCGTGCACGACGGTACTGTCCATCTTACAGTACATCTACATGTATTCTCATTTATTGTACTTCTATCAACTTAACCAAATAACGTGAGATTCAGAAGTGAAGTAATTGAGCTTTCACTTCTGTTACCCCATTTCTGATTTTTGCATTAACAGAAGATAACAAAGAACACTCTAGTTCTGATTCATTCCTAGTGAAAATATATCCATTTTTTTGCCAGAATTATAAAAAGCCAAGACAATGTACAATGTGCAAAAACTTAGGACCAGCCTGATAAAGATATTTGAAGTAAAGCATTATGAATTTCATTAGGGATACAAATGTCGGTTAACCAAAAAGATCGTTTTAATTACACGAGTAATATAAGAACATATAATACATTGCTTCACAAGTTAATCAGACTCCTTGCCATTCATGATGGACTCCAATTTTGTGCTTCCCACGACTTCGCAAGTCGAAAAGCAATATAGACATCATGAATCTTTTTCCATCAGTTGAAAGTTTCTAATAATTCTACACCAGGTGGTTTTAATCATTTATATGAATTGTATGAGTGAGAAGCTGAAATTCTGACCTTCAAGCAAAGCATCATCCAACAGCATTACCTAGGAGGCCTCTCCAAAGCAATCCAACCAAACTTTCCTTTGCGGAAATCTGATAAGATGCGGAAAGCTGCTTGATGACTGTCCCCGTTGAACAATTGAAGTGCTAACTTTTGAACAAATCTGTCACCAACAATTTGTTTTACGCGTATAATAATAATACTAAACTAGAAATGAAAAGTTATTGATTAGCATATGATACGTACGTGTGACCACATTGACCGTCTGCATCGACTTTATATCGCTTTTGAAGTAATTCTATACCTG ATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGA MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA
BLAST of Cp4.1LG15g00370 vs. Swiss-Prot
Match: CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1) HSP 1 Score: 593.6 bits (1529), Expect = 1.6e-168 Identity = 311/407 (76.41%), Postives = 347/407 (85.26%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. Swiss-Prot
Match: CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 4.5e-49 Identity = 117/333 (35.14%), Postives = 176/333 (52.85%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A0A0KE82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408170 PE=4 SV=1) HSP 1 Score: 690.6 bits (1781), Expect = 1.1e-195 Identity = 358/410 (87.32%), Postives = 374/410 (91.22%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A0D2R0Y2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G080000 PE=4 SV=1) HSP 1 Score: 652.1 bits (1681), Expect = 4.3e-184 Identity = 333/404 (82.43%), Postives = 363/404 (89.85%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A061DQU5_THECC (Chloroplast stem-loop binding protein of 41 kDa isoform 1 OS=Theobroma cacao GN=TCM_004387 PE=4 SV=1) HSP 1 Score: 650.6 bits (1677), Expect = 1.3e-183 Identity = 326/402 (81.09%), Postives = 359/402 (89.30%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: M5VVY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006606mg PE=4 SV=1) HSP 1 Score: 649.0 bits (1673), Expect = 3.7e-183 Identity = 323/403 (80.15%), Postives = 363/403 (90.07%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: B9H883_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23110g PE=4 SV=2) HSP 1 Score: 646.4 bits (1666), Expect = 2.4e-182 Identity = 324/403 (80.40%), Postives = 355/403 (88.09%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TAIR10
Match: AT3G63140.1 (AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa) HSP 1 Score: 593.6 bits (1529), Expect = 9.2e-170 Identity = 311/407 (76.41%), Postives = 347/407 (85.26%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. TAIR10
Match: AT1G09340.1 (AT1G09340.1 chloroplast RNA binding) HSP 1 Score: 196.8 bits (499), Expect = 2.5e-50 Identity = 117/333 (35.14%), Postives = 176/333 (52.85%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|659096967|ref|XP_008449375.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis melo]) HSP 1 Score: 698.4 bits (1801), Expect = 7.6e-198 Identity = 359/408 (87.99%), Postives = 378/408 (92.65%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|449444637|ref|XP_004140080.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis sativus]) HSP 1 Score: 690.6 bits (1781), Expect = 1.6e-195 Identity = 358/410 (87.32%), Postives = 374/410 (91.22%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|470108717|ref|XP_004290655.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Fragaria vesca subsp. vesca]) HSP 1 Score: 652.9 bits (1683), Expect = 3.6e-184 Identity = 333/405 (82.22%), Postives = 364/405 (89.88%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|657988632|ref|XP_008386496.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Malus domestica]) HSP 1 Score: 652.5 bits (1682), Expect = 4.8e-184 Identity = 330/403 (81.89%), Postives = 359/403 (89.08%), Query Frame = 1
BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|823148033|ref|XP_012473925.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Gossypium raimondii]) HSP 1 Score: 652.1 bits (1681), Expect = 6.2e-184 Identity = 333/404 (82.43%), Postives = 363/404 (89.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |