Cp4.1LG15g00370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG15g00370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNAD dependent epimerase/dehydratase, putative
LocationCp4.1LG15 : 229429 .. 232829 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATGAACATTCATAGTATCGGTAAGTATCATTAAAAGCGATAATATCGTTAATATCGTTCAACTAGTTCGGAATTTGGTCTGTATCCACTTTCCAATTTGACCATTTAATTTTTCACCTTTACATTAGCGAAGTGGTATAATGGCCATGGCAAAATGATTGGCCGTTATCATACATCATCTATCTGATAGCTAAAAGAGCTGATTCTCATCTTCACACGGTCCAGCTCAAAATTCTTCGATTCCATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGTTAGTCATTTGTGATATACTCACAACCCAGGGAACTCGAAATGAGTGGTGGTTAACTAACTGTCTGTATGTTTTGGGATGTTTTTTTAGGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGTTTGTCAATTCTGCTACCTTCTCACTCTTTCTGGTGGATTGTTCTTGATAGGGTTCTTGTTTTGTTGATATCAATCCACCTTTAAAGGAACAGTAAACATAATCTTGCTTTTAAACATAGAATCTATTTATGAAGATTACCCTTTTTTACAGAGATTTCAGTAAAGTAAAGGAATTTTGTGAAATCCCACATCGGTTGGGGAGGAGACTGAAACACCCTTTATAAGATTGTGAAAACCTCTCCCGAGCAGATGCGTTTTAAAAACTATGAGGGTAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTAGGCTTGGGCCATTACAAATGGTATCAGAGTCACACTGGGTGATGTGCCAGCGAGGAGGCTGTTCTCCGAAGGAGGTAGACACGAGGCGGTGTGCCAGCAAGGACGCTGGTCCCGAAGGGGGTAGACACGAGGTGGTGTGCCAGCAAAGACGCTGGTCCCGAAGGGGGGTGGATTTGGTGGGGGTCCCACATCGGTTAGGAGGAGAACGAAACACCCTCTATAAGGGTGTGGAAACCTCTCCCTAGTATACGCGTTTTAAAAACCTCGAGGGAAAGCCTAAAGAGGACAATATTTACCAGGGTGGGCTTGGGCTTGGGCTTGGGCTGTTACAGATTTAAACCCTTAATCTGCTAGAATCATGCTGGAAATCAATCTAAGCTGCCATTTGGCCTATATTTTGACACAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGTAAACATTACAGTGATCCTATCAGCATAGTAGATAGATAGAAGGCAGACACTTACAGAAGGCTAATAAATCTGCATCATTACTATGACAGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGTAAGAGCATACATATTTATAAACATTTCTAACCTTGATTGATGAGCTCATGGACTTGATAAATTCTCGATGCAGGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGGTGAGTAAAAGGAAATAGTTTCTTTGATGCTTTAGGGGTAAACATAGAAGATTCAGAATTTACCTATTGTTTTTTGCAGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGACCGTTCTTCGGATAATCGTGCACGACGGTACTGTCCATCTTACAGTACATCTACATGTATTCTCATTTATTGTACTTCTATCAACTTAACCAAATAACGTGAGATTCAGAAGTGAAGTAATTGAGCTTTCACTTCTGTTACCCCATTTCTGATTTTTGCATTAACAGAAGATAACAAAGAACACTCTAGTTCTGATTCATTCCTAGTGAAAATATATCCATTTTTTTGCCAGAATTATAAAAAGCCAAGACAATGTACAATGTGCAAAAACTTAGGACCAGCCTGATAAAGATATTTGAAGTAAAGCATTATGAATTTCATTAGGGATACAAATGTCGGTTAACCAAAAAGATCGTTTTAATTACACGAGTAATATAAGAACATATAATACATTGCTTCACAAGTTAATCAGACTCCTTGCCATTCATGATGGACTCCAATTTTGTGCTTCCCACGACTTCGCAAGTCGAAAAGCAATATAGACATCATGAATCTTTTTCCATCAGTTGAAAGTTTCTAATAATTCTACACCAGGTGGTTTTAATCATTTATATGAATTGTATGAGTGAGAAGCTGAAATTCTGACCTTCAAGCAAAGCATCATCCAACAGCATTACCTAGGAGGCCTCTCCAAAGCAATCCAACCAAACTTTCCTTTGCGGAAATCTGATAAGATGCGGAAAGCTGCTTGATGACTGTCCCCGTTGAACAATTGAAGTGCTAACTTTTGAACAAATCTGTCACCAACAATTTGTTTTACGCGTATAATAATAATACTAAACTAGAAATGAAAAGTTATTGATTAGCATATGATACGTACGTGTGACCACATTGACCGTCTGCATCGACTTTATATCGCTTTTGAAGTAATTCTATACCTG

mRNA sequence

CAAATGAACATTCATAGTATCGGTAAGTATCATTAAAAGCGATAATATCGTTAATATCGTTCAACTAGTTCGGAATTTGGTCTGTATCCACTTTCCAATTTGACCATTTAATTTTTCACCTTTACATTAGCGAAGTGGTATAATGGCCATGGCAAAATGATTGGCCGTTATCATACATCATCTATCTGATAGCTAAAAGAGCTGATTCTCATCTTCACACGGTCCAGCTCAAAATTCTTCGATTCCATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGACCGTTCTTCGGATAATCGTGCACGACGGTACTGTCCATCTTACAGTACATCTACATGTATTCTCATTTATTGTACTTCTATCAACTTAACCAAATAACGTGAGATTCAGAAGTGAAGTAATTGAGCTTTCACTTCTGTTACCCCATTTCTGATTTTTGCATTAACAGAAGATAACAAAGAACACTCTAGTTCTGATTCATTCCTAGTGAAAATATATCCATTTTTTTGCCAGAATTATAAAAAGCCAAGACAATGTACAATGTGCAAAAACTTAGGACCAGCCTGATAAAGATATTTGAAGTAAAGCATTATGAATTTCATTAGGGATACAAATGTCGGTTAACCAAAAAGATCGTTTTAATTACACGAGTAATATAAGAACATATAATACATTGCTTCACAAGTTAATCAGACTCCTTGCCATTCATGATGGACTCCAATTTTGTGCTTCCCACGACTTCGCAAGTCGAAAAGCAATATAGACATCATGAATCTTTTTCCATCAGTTGAAAGTTTCTAATAATTCTACACCAGGTGGTTTTAATCATTTATATGAATTGTATGAGTGAGAAGCTGAAATTCTGACCTTCAAGCAAAGCATCATCCAACAGCATTACCTAGGAGGCCTCTCCAAAGCAATCCAACCAAACTTTCCTTTGCGGAAATCTGATAAGATGCGGAAAGCTGCTTGATGACTGTCCCCGTTGAACAATTGAAGTGCTAACTTTTGAACAAATCTGTCACCAACAATTTGTTTTACGCGTATAATAATAATACTAAACTAGAAATGAAAAGTTATTGATTAGCATATGATACGTACGTGTGACCACATTGACCGTCTGCATCGACTTTATATCGCTTTTGAAGTAATTCTATACCTG

Coding sequence (CDS)

ATGGCTGCTCTCGCTTCTTCTTCGTCTTCCCTCTTCACCTCTAAGCCCTCCATTCATCTTCCATCTTCCCTTTCTCCTTGTCTTCTGCGTTCATCACTTTCCCCAATCTCTTCCCCTTCTGCTCTGACATCCTCTTTCGCCATTTCCCATTCCTTTCTCCCTTTTCCCTCCTCTTCCAGACGCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGACAAGAAGAACGTCTTGATTGTCAACACAAATAGCGGCGGACATGCCGTAATCGGCTTCTATTTTGCCAAACAGCTTCTGGGTTCCGGCCATGAGGTCACAATTTTGACTGTCGGTGAAGAGAGTTCCGACAAGATGAAGAAACCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTATGGGGGTATCCTGCAGAAGTTGGGAAGGTTGTGGCAGGAGCTTCATTTGATGTGGTATTAGATAACAATGGCAAGGACATTGATTCTGTGAGGCCTGTTATTGATTGGGCAAAGAGTTCTGGTGTGAAGCAGTTTCTATTTATCAGTAGTGCTGGGATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATACTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAACAATATATTGCTGAGGTTTTCAGCAGCTGGGCTGTTTTCCGTCCCCAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATAGAATTGTACGGGACAGACCCATTCCAATTCCAGGCTCTGGGATGCAGCTGACAAACATCGCACATGTCAGGGACTTGTCTTCTATGTTGACACTGGCTGTAGAGAAGCCGGATGAGGCACAGGCTAACATATTCAACTGCGTAAGCGATCGTGCCGTGACTCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGGCGTCCAGTTAACATTGTACATTATGATCCAAAAGCAGTTGGGGTGGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCTCAGGAGATCTTAGGGTGGAAAAGTAGCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAGGCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAGGTTCCAGTAGCTGCTTGA

Protein sequence

MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA
BLAST of Cp4.1LG15g00370 vs. Swiss-Prot
Match: CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 1.6e-168
Identity = 311/407 (76.41%), Postives = 347/407 (85.26%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-S 60
           MAAL SSSS  F+SK +  + + L  P L R SL S  SS S+L+SS + S S L F   
Sbjct: 1   MAAL-SSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 60

Query: 61  SSRRSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEES 120
           +SRR +   F+V+ASS  +KKNVLIVNTNSGGHAVIGFYFAK+LL +GH VTILTVG+ES
Sbjct: 61  TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 120

Query: 121 SDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWA 180
           S+KMKKPPFNRFSEIVS GGKTVWG PA V  VV G +FDVVLDNNGKD+D+VRPV+DWA
Sbjct: 121 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 180

Query: 181 KSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMI 240
           KSSGVKQFLFISSAGIYK T++PPHVEGD VKADAGHV VE+Y+AE F +WA FRPQYMI
Sbjct: 181 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 240

Query: 241 GSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFN 300
           GSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFN
Sbjct: 241 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 300

Query: 301 CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEIL 360
           CVSDRAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++L
Sbjct: 301 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLL 360

Query: 361 GWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           GW+S TNLPEDLKERFEEYVKIGRDKK IKFELDDKILE+LK PVAA
Sbjct: 361 GWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

BLAST of Cp4.1LG15g00370 vs. Swiss-Prot
Match: CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.5e-49
Identity = 117/333 (35.14%), Postives = 176/333 (52.85%), Query Frame = 1

Query: 72  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM----KKPPFNR 131
           S++ +K +LI+    GG   IG + ++ L+  GH+VT+ T G+    K         F  
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFAD 108

Query: 132 FSEIVS--AGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSGVKQFL 191
           FS  +    G +  + +   V   ++   FDVV D NG++ + V P+++      ++Q++
Sbjct: 109 FSSKILHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYI 168

Query: 192 FISSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNK 251
           + SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N  
Sbjct: 169 YCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYN 228

Query: 252 DCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSDRA 311
             EEWFF R+   RPIP+P SG+Q++ + HV+DL++   L V   ++A   IFN   ++ 
Sbjct: 229 PVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKY 288

Query: 312 VTLDGMAKLCAQAAGRPV-NIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSS 371
           VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK  
Sbjct: 289 VTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPE 348

Query: 372 TNLPEDLKERFEEYVKIGRDKKAIKFELDDKIL 395
            +L E L + +      G  +K   F  DD IL
Sbjct: 349 FDLVEGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A0A0KE82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408170 PE=4 SV=1)

HSP 1 Score: 690.6 bits (1781), Expect = 1.1e-195
Identity = 358/410 (87.32%), Postives = 374/410 (91.22%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-----FLPF 60
           MAAL  SSS LF+SKPSI+ PSS+SP     SLSPIS+ S ++SSF+ISHS     +  F
Sbjct: 1   MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSF 60

Query: 61  PSSS--RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG 120
            SSS  R S V SFSVRASS+ KK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG
Sbjct: 61  SSSSSFRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG 120

Query: 121 EESSDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVI 180
           E+SSDKM KPPFNRFSEIVS GGKTVWG PAE+GKVV GASFDVVLDNNGKDID+VRPVI
Sbjct: 121 EQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVI 180

Query: 181 DWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQ 240
           DWAKSSGVKQFLFISSAGIYK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQ
Sbjct: 181 DWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQ 240

Query: 241 YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQAN 300
           YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEA +N
Sbjct: 241 YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN 300

Query: 301 IFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ 360
           IFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ
Sbjct: 301 IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ 360

Query: 361 EILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           EILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL VPVAA
Sbjct: 361 EILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLNVPVAA 409

BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A0D2R0Y2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G080000 PE=4 SV=1)

HSP 1 Score: 652.1 bits (1681), Expect = 4.3e-184
Identity = 333/404 (82.43%), Postives = 363/404 (89.85%), Query Frame = 1

Query: 1   MAALASSSSS--LFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSS 60
           MAALASSSSS  LF+S P+     SL P L R SL      S L+SS ++S SF  +P+S
Sbjct: 1   MAALASSSSSSLLFSSPPTKFPSPSLCPPL-RLSLPT----SFLSSSLSLSPSFHAYPTS 60

Query: 61  SRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 120
           SRR +  SF++RAS+A+KK VLIVNTNSGGHAVIGFYFAK+LLGSGHEVTI TVGEE SD
Sbjct: 61  SRRYSASSFTIRASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTIFTVGEEGSD 120

Query: 121 KMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 180
           KMKKPPFNRFSEI SAGGKTVWG PA+VGKVVAGA+FDVVLDNNGKD+D+VRPV+DWAKS
Sbjct: 121 KMKKPPFNRFSEITSAGGKTVWGDPADVGKVVAGATFDVVLDNNGKDLDTVRPVVDWAKS 180

Query: 181 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 240
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+Y+AEVFSSWAVFRPQYMIGS
Sbjct: 181 SGVKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYVAEVFSSWAVFRPQYMIGS 240

Query: 241 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCV 300
           GNNKDCEEWFFDRIVR RP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKP+ A  NIFNCV
Sbjct: 241 GNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAACCNIFNCV 300

Query: 301 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW 360
           SDRAVTLDGMAKLCA AAG PV IVHYDPKA+G+DAKKAFPFRNMHFYAEPRAA++ILGW
Sbjct: 301 SDRAVTLDGMAKLCAAAAGLPVEIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKDILGW 360

Query: 361 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           KS+TNLPEDLKERFEEYVKIGRDKK ++FE+DDKIL SLKVPVA
Sbjct: 361 KSTTNLPEDLKERFEEYVKIGRDKKPMQFEMDDKILGSLKVPVA 399

BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: A0A061DQU5_THECC (Chloroplast stem-loop binding protein of 41 kDa isoform 1 OS=Theobroma cacao GN=TCM_004387 PE=4 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 1.3e-183
Identity = 326/402 (81.09%), Postives = 359/402 (89.30%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSR 60
           MAALASSSSSL  S P   LP   SP L       +S+ S L+SS +IS SF  +P+SSR
Sbjct: 1   MAALASSSSSLLFSSPPSKLP---SPSLYPLPRLSLSTSSFLSSSLSISPSFFAYPTSSR 60

Query: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120
           R +  SF+V+AS  +KK VLIVNTNSGGHAVIGFYFAK+LLGSGHEVTILTVG+E SDKM
Sbjct: 61  RYSPSSFTVKASGGEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGDEGSDKM 120

Query: 121 KKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSG 180
           KKPPFNRFSEIVSAGGKTVWG PA+VGKVVAGA+FDVVLDNNGKD+D+VRPVIDWAKSSG
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPADVGKVVAGATFDVVLDNNGKDLDTVRPVIDWAKSSG 180

Query: 181 VKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGN 240
           V QFL+ISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIAE+FSSWA+FRPQYMIGSGN
Sbjct: 181 VDQFLYISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGN 240

Query: 241 NKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSD 300
           NKDCEEWFFDRIVR RP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKP+ A +NIFNCVSD
Sbjct: 241 NKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAASSNIFNCVSD 300

Query: 301 RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKS 360
           RAVTLDGMA+LCA+AAG PV I HYDPKAVG+DAKKAFPFRNMHFY+EPRAA++ILGW  
Sbjct: 301 RAVTLDGMARLCAEAAGLPVEIAHYDPKAVGIDAKKAFPFRNMHFYSEPRAAKDILGWNG 360

Query: 361 STNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           +TNLPEDLKERFEEYVKIGRDK+ ++FELDDKILESLKV VA
Sbjct: 361 TTNLPEDLKERFEEYVKIGRDKEPMQFELDDKILESLKVAVA 399

BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: M5VVY7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006606mg PE=4 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 3.7e-183
Identity = 323/403 (80.15%), Postives = 363/403 (90.07%), Query Frame = 1

Query: 1   MAALASSSSS-LFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSS 60
           MA L SSSSS LF+S  S  +P SLS  L R SLS  S  S L+SS +ISHS + +P+ S
Sbjct: 1   MATLTSSSSSVLFSSTHSNLVPPSLSH-LPRLSLSSSSHFSTLSSSLSISHSSVAYPAIS 60

Query: 61  RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120
           RR N CSFS++AS+ +KK VLIVNTN GGHAVIGFYFAK+LLGSGH+VT+LTVGEESSDK
Sbjct: 61  RRFNRCSFSIKASAGEKKKVLIVNTNGGGHAVIGFYFAKELLGSGHQVTVLTVGEESSDK 120

Query: 121 MKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180
           MKKPPF+RFSEIVSAGGKTVWG PA++GK++ G +FDVVL+NNGKD+D+VRPV DWAKSS
Sbjct: 121 MKKPPFSRFSEIVSAGGKTVWGEPADIGKILEGTAFDVVLENNGKDLDTVRPVADWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240
           GVKQFL+ISSAGIYKPT+EPPHVEGD VKADA HV VE+YIAE+F SWA+FRPQYM+GSG
Sbjct: 181 GVKQFLYISSAGIYKPTEEPPHVEGDVVKADASHVAVEKYIAEIFGSWAIFRPQYMLGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVS 300
           NNKDCEEWFFDRI+RDRP+PIPGSG+QLTNI+HVRDLSSMLTLAVE PD A +NIFNCVS
Sbjct: 241 NNKDCEEWFFDRILRDRPVPIPGSGLQLTNISHVRDLSSMLTLAVENPDAASSNIFNCVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360
           DRAVTLDG+AKLCAQAAGRPVNIVHYDPKA GVDAKKAFPFRNMHFYAEPRAA+E+LGWK
Sbjct: 301 DRAVTLDGLAKLCAQAAGRPVNIVHYDPKAAGVDAKKAFPFRNMHFYAEPRAAKEVLGWK 360

Query: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           S+TNL EDLKERFEEY+KIGRDKK IKFELDDKI+ESLKVPVA
Sbjct: 361 STTNLTEDLKERFEEYLKIGRDKKTIKFELDDKIIESLKVPVA 402

BLAST of Cp4.1LG15g00370 vs. TrEMBL
Match: B9H883_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23110g PE=4 SV=2)

HSP 1 Score: 646.4 bits (1666), Expect = 2.4e-182
Identity = 324/403 (80.40%), Postives = 355/403 (88.09%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSR 60
           MA LA SSSS   S PS  L         R SLS  S  S L+SS +IS SF  +P+ SR
Sbjct: 35  MATLAPSSSSPIFSGPSSKLSQPSLSSSSRLSLSSFSQLSPLSSSLSISPSFSAYPTCSR 94

Query: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120
           R    SF V+AS+A+KK +LIVNTNSGGHAVIGFYFAK+LLGSGHEV+ILTVGEESSDKM
Sbjct: 95  RLFASSFPVKASAAEKKKILIVNTNSGGHAVIGFYFAKELLGSGHEVSILTVGEESSDKM 154

Query: 121 KKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSG 180
           KKPPF+RFSEIV AGGKTVWG PAEVGK V GA+FDVVLDNNGKD+D+VRPV+DWAKS+G
Sbjct: 155 KKPPFSRFSEIVGAGGKTVWGNPAEVGKAVEGATFDVVLDNNGKDLDTVRPVVDWAKSAG 214

Query: 181 VKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGN 240
           VKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIAE+FSSWA+FRPQYMIGSGN
Sbjct: 215 VKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYIAEIFSSWAIFRPQYMIGSGN 274

Query: 241 NKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSD 300
           NKDCEEWFFDRIVR RP+PIPGSGMQLTNIAHVRDLSSMLTLAVE P+ A  NIFNCVSD
Sbjct: 275 NKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVENPEAASGNIFNCVSD 334

Query: 301 RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKS 360
           RAVTLDGMAKLCAQAAG PV I+HYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGW+ 
Sbjct: 335 RAVTLDGMAKLCAQAAGLPVEIMHYDPKAVGIDAKKAFPFRNMHFYAEPRAAKDILGWQG 394

Query: 361 STNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           +TNLPEDLKERF+EYVKIGRDKK ++FE+DDKILESLKVPVAA
Sbjct: 395 TTNLPEDLKERFDEYVKIGRDKKPMQFEIDDKILESLKVPVAA 437

BLAST of Cp4.1LG15g00370 vs. TAIR10
Match: AT3G63140.1 (AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa)

HSP 1 Score: 593.6 bits (1529), Expect = 9.2e-170
Identity = 311/407 (76.41%), Postives = 347/407 (85.26%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSL-SPCLLRSSL-SPISSPSALTSSFAISHSFLPFP-S 60
           MAAL SSSS  F+SK +  + + L  P L R SL S  SS S+L+SS + S S L F   
Sbjct: 1   MAAL-SSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 60

Query: 61  SSRRSNVCSFSVRASSA-DKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEES 120
           +SRR +   F+V+ASS  +KKNVLIVNTNSGGHAVIGFYFAK+LL +GH VTILTVG+ES
Sbjct: 61  TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 120

Query: 121 SDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWA 180
           S+KMKKPPFNRFSEIVS GGKTVWG PA V  VV G +FDVVLDNNGKD+D+VRPV+DWA
Sbjct: 121 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 180

Query: 181 KSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMI 240
           KSSGVKQFLFISSAGIYK T++PPHVEGD VKADAGHV VE+Y+AE F +WA FRPQYMI
Sbjct: 181 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 240

Query: 241 GSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFN 300
           GSGNNKDCEEWFFDRIVRDR +PIPGSG+QLTNI+HVRDLSSMLT AV  P+ A  NIFN
Sbjct: 241 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 300

Query: 301 CVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEIL 360
           CVSDRAVTLDGMAKLCA AAG+ V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+++L
Sbjct: 301 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLL 360

Query: 361 GWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           GW+S TNLPEDLKERFEEYVKIGRDKK IKFELDDKILE+LK PVAA
Sbjct: 361 GWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA 406

BLAST of Cp4.1LG15g00370 vs. TAIR10
Match: AT1G09340.1 (AT1G09340.1 chloroplast RNA binding)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-50
Identity = 117/333 (35.14%), Postives = 176/333 (52.85%), Query Frame = 1

Query: 72  SSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM----KKPPFNR 131
           S++ +K +LI+    GG   IG + ++ L+  GH+VT+ T G+    K         F  
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFAD 108

Query: 132 FSEIVS--AGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSSGVKQFL 191
           FS  +    G +  + +   V   ++   FDVV D NG++ + V P+++      ++Q++
Sbjct: 109 FSSKILHLKGDRKDYDF---VKSSLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYI 168

Query: 192 FISSAGIYKPTDEPPHVEGDTVKADAGHVG---VEQYIAEVFSSWAVFRPQYMIGSGNNK 251
           + SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N  
Sbjct: 169 YCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYN 228

Query: 252 DCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVSDRA 311
             EEWFF R+   RPIP+P SG+Q++ + HV+DL++   L V   ++A   IFN   ++ 
Sbjct: 229 PVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKY 288

Query: 312 VTLDGMAKLCAQAAGRPV-NIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSS 371
           VT DG+AK CA+A G P   IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK  
Sbjct: 289 VTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPE 348

Query: 372 TNLPEDLKERFEEYVKIGRDKKAIKFELDDKIL 395
            +L E L + +      G  +K   F  DD IL
Sbjct: 349 FDLVEGLTDSYNLDFGRGTFRKEADFTTDDMIL 371

BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|659096967|ref|XP_008449375.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis melo])

HSP 1 Score: 698.4 bits (1801), Expect = 7.6e-198
Identity = 359/408 (87.99%), Postives = 378/408 (92.65%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-FLPFPSSS 60
           MAAL  SSS LF+SKPSI+ PS +SP     SLSPIS+ S ++SSF+ISHS FL   SSS
Sbjct: 1   MAALPFSSS-LFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSS 60

Query: 61  ----RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEE 120
               R S VCSFSVRASS+ KK VLIVNTNSGGHAVIGFYFAK+LLGSGHEVTILTVGE+
Sbjct: 61  SSSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQ 120

Query: 121 SSDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDW 180
           SSDKM KPPFNRFSEIVS GGKTVWG PAE+GKV+ GASFDVVLDNNGKDID+VRPVIDW
Sbjct: 121 SSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVRPVIDW 180

Query: 181 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYM 240
           AKSSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+Y+AEVFSSWA+FRPQYM
Sbjct: 181 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYM 240

Query: 241 IGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIF 300
           IGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEA +NIF
Sbjct: 241 IGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIF 300

Query: 301 NCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEI 360
           NCV+DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEI
Sbjct: 301 NCVTDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEI 360

Query: 361 LGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           LGWKS+TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA
Sbjct: 361 LGWKSTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 407

BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|449444637|ref|XP_004140080.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucumis sativus])

HSP 1 Score: 690.6 bits (1781), Expect = 1.6e-195
Identity = 358/410 (87.32%), Postives = 374/410 (91.22%), Query Frame = 1

Query: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHS-----FLPF 60
           MAAL  SSS LF+SKPSI+ PSS+SP     SLSPIS+ S ++SSF+ISHS     +  F
Sbjct: 1   MAALPFSSS-LFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSF 60

Query: 61  PSSS--RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG 120
            SSS  R S V SFSVRASS+ KK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG
Sbjct: 61  SSSSSFRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVG 120

Query: 121 EESSDKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVI 180
           E+SSDKM KPPFNRFSEIVS GGKTVWG PAE+GKVV GASFDVVLDNNGKDID+VRPVI
Sbjct: 121 EQSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVRPVI 180

Query: 181 DWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQ 240
           DWAKSSGVKQFLFISSAGIYK TDEPPHVEGD VKADAGHVGVE+YIAEVFSSWAVFRPQ
Sbjct: 181 DWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQ 240

Query: 241 YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQAN 300
           YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEA +N
Sbjct: 241 YMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSN 300

Query: 301 IFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ 360
           IFNCVS RAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ
Sbjct: 301 IFNCVSGRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ 360

Query: 361 EILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVAA 404
           EILGW+ +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL VPVAA
Sbjct: 361 EILGWEGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLNVPVAA 409

BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|470108717|ref|XP_004290655.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 652.9 bits (1683), Expect = 3.6e-184
Identity = 333/405 (82.22%), Postives = 364/405 (89.88%), Query Frame = 1

Query: 1   MAALASSSSS--LFTSKPSIHLPSSLSPCLLR-SSLSPISSPSALTSSFAISHSFLPFPS 60
           MA LASSSSS  LF+S  S   P SLSP  L  SS S IS+   L+SS ++SHSF+ +P+
Sbjct: 1   MATLASSSSSSVLFSSPHSNLTPPSLSPSRLSFSSSSHIST--TLSSSLSVSHSFVTYPT 60

Query: 61  SSRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESS 120
           +SRR + CSFSV+A +ADKK VLIVNTNSGGHAVIGFYFAK+LLGSGHEVTILTVGEESS
Sbjct: 61  TSRRFSPCSFSVKAIAADKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEESS 120

Query: 121 DKMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAK 180
           DKMKK PF RFSEIV AGGKTVWG PAE+ KV+ G++FDVVLDNNGKD+D+V+PV DWAK
Sbjct: 121 DKMKKTPFTRFSEIVGAGGKTVWGEPAEIAKVLEGSAFDVVLDNNGKDLDAVKPVADWAK 180

Query: 181 SSGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIG 240
           SSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHV VE+Y+AEVFSSWA FRPQYMIG
Sbjct: 181 SSGVKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVAVEKYMAEVFSSWASFRPQYMIG 240

Query: 241 SGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNC 300
           SGNNKDCEEWFFDRIVRDRP+PIPGSGMQLT I+HVRDLSSMLTLAVEKPD A  NIFNC
Sbjct: 241 SGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTVISHVRDLSSMLTLAVEKPDAASGNIFNC 300

Query: 301 VSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILG 360
           VSDRAVTLDG+AKLCAQAAGRPVNIVHY+PKA GVDAKKAFPFRNMHFYAEPRAA++ILG
Sbjct: 301 VSDRAVTLDGLAKLCAQAAGRPVNIVHYEPKAAGVDAKKAFPFRNMHFYAEPRAAKDILG 360

Query: 361 WKSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           WKS+TNL EDLKERFEEY+KIGRDKKAIKF+LDDKILESLK PVA
Sbjct: 361 WKSTTNLSEDLKERFEEYLKIGRDKKAIKFDLDDKILESLKAPVA 403

BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|657988632|ref|XP_008386496.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Malus domestica])

HSP 1 Score: 652.5 bits (1682), Expect = 4.8e-184
Identity = 330/403 (81.89%), Postives = 359/403 (89.08%), Query Frame = 1

Query: 1   MAALASSSSS-LFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSS 60
           MA LASS SS LF+S PS   P SLSP L R SLS  S  S L SS + SHSFL  P++S
Sbjct: 1   MATLASSFSSVLFSSTPSNLSPPSLSP-LPRLSLSSSSHFSTLPSSLSASHSFLTHPATS 60

Query: 61  RRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDK 120
           RRSN CSFS++AS+ +KK VLIVNTNSGGHAVIGFYFAK+LLGSG++VT+LTVGEE SDK
Sbjct: 61  RRSNHCSFSIKASAEEKKKVLIVNTNSGGHAVIGFYFAKELLGSGYDVTVLTVGEERSDK 120

Query: 121 MKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKSS 180
           MKKPPF RFSEIVSAGGKTVWG PA +G +  GA+FDVVLDNNGKD+D+VRPV DWAKSS
Sbjct: 121 MKKPPFTRFSEIVSAGGKTVWGEPAAIGTIFEGAAFDVVLDNNGKDLDTVRPVADWAKSS 180

Query: 181 GVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSG 240
           G KQFLFISSAGIYKPT+EPPHVEGD VKADAGHV VE+YIAE+F SWA+FRPQYM+GSG
Sbjct: 181 GAKQFLFISSAGIYKPTEEPPHVEGDAVKADAGHVAVEKYIAEIFGSWAIFRPQYMLGSG 240

Query: 241 NNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCVS 300
           NNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+HVRDLSSMLTLAVE PD A  NIFN VS
Sbjct: 241 NNKDCEEWFFDRIVRDRPVPIPGSGMQLTNISHVRDLSSMLTLAVENPDAASGNIFNIVS 300

Query: 301 DRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWK 360
           +RAVTLDG+AKLCAQAAGRP NIVHYDPKA GVDAKKAFPFRNMHFYAEPRAA+EILGWK
Sbjct: 301 ERAVTLDGLAKLCAQAAGRPANIVHYDPKAAGVDAKKAFPFRNMHFYAEPRAAKEILGWK 360

Query: 361 SSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           S+TNL EDLKERFEEY+KIGRDKKAIKFELDDKILESLKVPVA
Sbjct: 361 STTNLAEDLKERFEEYLKIGRDKKAIKFELDDKILESLKVPVA 402

BLAST of Cp4.1LG15g00370 vs. NCBI nr
Match: gi|823148033|ref|XP_012473925.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Gossypium raimondii])

HSP 1 Score: 652.1 bits (1681), Expect = 6.2e-184
Identity = 333/404 (82.43%), Postives = 363/404 (89.85%), Query Frame = 1

Query: 1   MAALASSSSS--LFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSS 60
           MAALASSSSS  LF+S P+     SL P L R SL      S L+SS ++S SF  +P+S
Sbjct: 1   MAALASSSSSSLLFSSPPTKFPSPSLCPPL-RLSLPT----SFLSSSLSLSPSFHAYPTS 60

Query: 61  SRRSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSD 120
           SRR +  SF++RAS+A+KK VLIVNTNSGGHAVIGFYFAK+LLGSGHEVTI TVGEE SD
Sbjct: 61  SRRYSASSFTIRASAAEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTIFTVGEEGSD 120

Query: 121 KMKKPPFNRFSEIVSAGGKTVWGYPAEVGKVVAGASFDVVLDNNGKDIDSVRPVIDWAKS 180
           KMKKPPFNRFSEI SAGGKTVWG PA+VGKVVAGA+FDVVLDNNGKD+D+VRPV+DWAKS
Sbjct: 121 KMKKPPFNRFSEITSAGGKTVWGDPADVGKVVAGATFDVVLDNNGKDLDTVRPVVDWAKS 180

Query: 181 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 240
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+Y+AEVFSSWAVFRPQYMIGS
Sbjct: 181 SGVKQFLFISSAGIYKPTDEPPHVEGDVVKADAGHVGVEKYVAEVFSSWAVFRPQYMIGS 240

Query: 241 GNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAQANIFNCV 300
           GNNKDCEEWFFDRIVR RP+PIPGSGMQLTNIAHVRDLSSMLTLAVEKP+ A  NIFNCV
Sbjct: 241 GNNKDCEEWFFDRIVRKRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPEAACCNIFNCV 300

Query: 301 SDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGW 360
           SDRAVTLDGMAKLCA AAG PV IVHYDPKA+G+DAKKAFPFRNMHFYAEPRAA++ILGW
Sbjct: 301 SDRAVTLDGMAKLCAAAAGLPVEIVHYDPKAIGIDAKKAFPFRNMHFYAEPRAAKDILGW 360

Query: 361 KSSTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVPVA 403
           KS+TNLPEDLKERFEEYVKIGRDKK ++FE+DDKIL SLKVPVA
Sbjct: 361 KSTTNLPEDLKERFEEYVKIGRDKKPMQFEMDDKILGSLKVPVA 399

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CP41A_ARATH1.6e-16876.41Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ... [more]
CP41B_ARATH4.5e-4935.14Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ... [more]
Match NameE-valueIdentityDescription
A0A0A0KE82_CUCSA1.1e-19587.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408170 PE=4 SV=1[more]
A0A0D2R0Y2_GOSRA4.3e-18482.43Uncharacterized protein OS=Gossypium raimondii GN=B456_004G080000 PE=4 SV=1[more]
A0A061DQU5_THECC1.3e-18381.09Chloroplast stem-loop binding protein of 41 kDa isoform 1 OS=Theobroma cacao GN=... [more]
M5VVY7_PRUPE3.7e-18380.15Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006606mg PE=4 SV=1[more]
B9H883_POPTR2.4e-18280.40Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23110g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT3G63140.19.2e-17076.41 chloroplast stem-loop binding protein of 41 kDa[more]
AT1G09340.12.5e-5035.14 chloroplast RNA binding[more]
Match NameE-valueIdentityDescription
gi|659096967|ref|XP_008449375.1|7.6e-19887.99PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cuc... [more]
gi|449444637|ref|XP_004140080.1|1.6e-19587.32PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cuc... [more]
gi|470108717|ref|XP_004290655.1|3.6e-18482.22PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Fra... [more]
gi|657988632|ref|XP_008386496.1|4.8e-18481.89PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Mal... [more]
gi|823148033|ref|XP_012473925.1|6.2e-18482.43PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Gos... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR001509Epimerase_deHydtase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0007623 circadian rhythm
biological_process GO:0009658 chloroplast organization
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0030154 cell differentiation
biological_process GO:0009735 response to cytokinin
biological_process GO:0045727 positive regulation of translation
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0048046 apoplast
cellular_component GO:0005840 ribosome
cellular_component GO:0010319 stromule
cellular_component GO:0005575 cellular_component
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g00370.1Cp4.1LG15g00370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001509NAD-dependent epimerase/dehydratase, N-terminal domainPFAMPF01370Epimerasecoord: 87..297
score: 1.
IPR016040NAD(P)-binding domainGENE3DG3DSA:3.40.50.720coord: 87..260
score: 1.4
IPR016040NAD(P)-binding domainunknownSSF51735NAD(P)-binding Rossmann-fold domainscoord: 75..380
score: 3.55
NoneNo IPR availableGENE3DG3DSA:3.90.25.10coord: 261..376
score: 6.4
NoneNo IPR availablePANTHERPTHR10366NAD DEPENDENT EPIMERASE/DEHYDRATASEcoord: 82..398
score: 1.6E
NoneNo IPR availablePANTHERPTHR10366:SF278CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTICcoord: 82..398
score: 1.6E

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g00370Silver-seed gourdcarcpeB0160
Cp4.1LG15g00370Cucumber (Chinese Long) v3cpecucB0294
Cp4.1LG15g00370Cucurbita pepo (Zucchini)cpecpeB154
Cp4.1LG15g00370Cucurbita pepo (Zucchini)cpecpeB281
Cp4.1LG15g00370Cucurbita pepo (Zucchini)cpecpeB259
Cp4.1LG15g00370Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g00370Cucumber (Gy14) v1cgycpeB0507
Cp4.1LG15g00370Cucurbita maxima (Rimu)cmacpeB373
Cp4.1LG15g00370Cucurbita maxima (Rimu)cmacpeB374
Cp4.1LG15g00370Cucurbita maxima (Rimu)cmacpeB611
Cp4.1LG15g00370Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g00370Cucurbita moschata (Rifu)cmocpeB337
Cp4.1LG15g00370Cucurbita moschata (Rifu)cmocpeB561
Cp4.1LG15g00370Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g00370Wild cucumber (PI 183967)cpecpiB240
Cp4.1LG15g00370Wild cucumber (PI 183967)cpecpiB254
Cp4.1LG15g00370Cucumber (Chinese Long) v2cpecuB236
Cp4.1LG15g00370Cucumber (Chinese Long) v2cpecuB253
Cp4.1LG15g00370Bottle gourd (USVL1VR-Ls)cpelsiB192
Cp4.1LG15g00370Bottle gourd (USVL1VR-Ls)cpelsiB203
Cp4.1LG15g00370Bottle gourd (USVL1VR-Ls)cpelsiB209
Cp4.1LG15g00370Watermelon (Charleston Gray)cpewcgB226
Cp4.1LG15g00370Watermelon (Charleston Gray)cpewcgB239
Cp4.1LG15g00370Watermelon (Charleston Gray)cpewcgB240
Cp4.1LG15g00370Watermelon (97103) v1cpewmB244
Cp4.1LG15g00370Watermelon (97103) v1cpewmB272
Cp4.1LG15g00370Melon (DHL92) v3.5.1cpemeB222
Cp4.1LG15g00370Melon (DHL92) v3.5.1cpemeB239
Cp4.1LG15g00370Cucumber (Gy14) v2cgybcpeB190
Cp4.1LG15g00370Melon (DHL92) v3.6.1cpemedB280