Cp4.1LG14g06560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g06560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor, putative
LocationCp4.1LG14 : 348682 .. 349662 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATACTCTGTTTTGTCCTGTTAAACTCACGGAGCACCGGAACTTCACCAGCAAATTTTCCCTAAAAAAATATCACCAATCGGAAAGTAGAGTCGTACGGATATCGGTGACGGACCCTGATGCGACGGATTCGTCGAGCGATGAGGAAGAGTTGTTCGAGCGGCAGAGAGTGAAGAAGTACATCAATGAGATCAAAATCCAAAGTGGGTGTCGAAATAGCCTTTTACCCAGTTGCCGGAAGAGGTCTGCTGGTGAGCAATCAGACTCCCGGCGTTCGGGGAAGGTGGTTCCGGCAACGAATGGGAAGAAGTTTCGTGGTGTACGGCAGCGGCCTTGGGGTAAGTGGGCGGCGGAGATTAGAGATCCTGCCCGCCGTGTACGTTTGTGGCTCGGGACCTACGACACGGCGGAGGAAGCCGCGATGGTGTATGACAACGCTGCCATTCAGCTTCGCGGACCGGACGCTTTGACGAACTTTGCAACGCCATCACCGGTGCCGATGCCGGAGAAGGAAGTTGAAGTGGCCAATATCGCCTCTGGTTCCGGCTCCTATTACGATTCCAGTGAGGAGTCTCACAATTTGTCATCTCCGACTTCGGTTCTCCACTTCAGAACGCCGTCGCCAGAAGAAACTGAAAAGCCCCAAAAACCCGATGAGTCTCAGCAACCGCCGCCGCCGTTCGCCGACGATCAATTTCACGAATGTCAAGTCAAAACTACTATTTCCTCGGAGTATTACACCGAGTTCCCCAGATTCGACGACGTCTTCAAACTTCCGATCCCCGAATCGCCGATCTTCGTCGATGAACAGCCTCTATTCTTCGAAGAAAGCATATGGAACGAAGATTTCAGTGAATTTTTCACTAATTTGCCTGAAGATTTTGGAACCCCATTATTATCATCTCCGATCAGCCAAGGGGGCGACGACTATTTCCAAGATATTTTGATGGGATCAGACCCCTTGGTGGTTCTGTAA

mRNA sequence

ATGGAGGATACTCTGTTTTGTCCTGTTAAACTCACGGAGCACCGGAACTTCACCAGCAAATTTTCCCTAAAAAAATATCACCAATCGGAAAGTAGAGTCGTACGGATATCGGTGACGGACCCTGATGCGACGGATTCGTCGAGCGATGAGGAAGAGTTGTTCGAGCGGCAGAGAGTGAAGAAGTACATCAATGAGATCAAAATCCAAAGTGGGTGTCGAAATAGCCTTTTACCCAGTTGCCGGAAGAGGTCTGCTGTTGAAGTGGCCAATATCGCCTCTGGTTCCGGCTCCTATTACGATTCCAGTGAGGAGTCTCACAATTTGTCATCTCCGACTTCGGTTCTCCACTTCAGAACGCCGTCGCCAGAAGAAACTGAAAAGCCCCAAAAACCCGATGAGTCTCAGCAACCGCCGCCGCCGTTCGCCGACGATCAATTTCACGAATGTCAAGTCAAAACTACTATTTCCTCGGAGTATTACACCGAGTTCCCCAGATTCGACGACGTCTTCAAACTTCCGATCCCCGAATCGCCGATCTTCGTCGATGAACAGCCTCTATTCTTCGAAGAAAGCATATGGAACGAAGATTTCAGTGAATTTTTCACTAATTTGCCTGAAGATTTTGGAACCCCATTATTATCATCTCCGATCAGCCAAGGGGGCGACGACTATTTCCAAGATATTTTGATGGGATCAGACCCCTTGGTGGTTCTGTAA

Coding sequence (CDS)

ATGGAGGATACTCTGTTTTGTCCTGTTAAACTCACGGAGCACCGGAACTTCACCAGCAAATTTTCCCTAAAAAAATATCACCAATCGGAAAGTAGAGTCGTACGGATATCGGTGACGGACCCTGATGCGACGGATTCGTCGAGCGATGAGGAAGAGTTGTTCGAGCGGCAGAGAGTGAAGAAGTACATCAATGAGATCAAAATCCAAAGTGGGTGTCGAAATAGCCTTTTACCCAGTTGCCGGAAGAGGTCTGCTGTTGAAGTGGCCAATATCGCCTCTGGTTCCGGCTCCTATTACGATTCCAGTGAGGAGTCTCACAATTTGTCATCTCCGACTTCGGTTCTCCACTTCAGAACGCCGTCGCCAGAAGAAACTGAAAAGCCCCAAAAACCCGATGAGTCTCAGCAACCGCCGCCGCCGTTCGCCGACGATCAATTTCACGAATGTCAAGTCAAAACTACTATTTCCTCGGAGTATTACACCGAGTTCCCCAGATTCGACGACGTCTTCAAACTTCCGATCCCCGAATCGCCGATCTTCGTCGATGAACAGCCTCTATTCTTCGAAGAAAGCATATGGAACGAAGATTTCAGTGAATTTTTCACTAATTTGCCTGAAGATTTTGGAACCCCATTATTATCATCTCCGATCAGCCAAGGGGGCGACGACTATTTCCAAGATATTTTGATGGGATCAGACCCCTTGGTGGTTCTGTAA

Protein sequence

MEDTLFCPVKLTEHRNFTSKFSLKKYHQSESRVVRISVTDPDATDSSSDEEELFERQRVKKYINEIKIQSGCRNSLLPSCRKRSAVEVANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQQPPPPFADDQFHECQVKTTISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFEESIWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL
Homology
[Close]
BLAST of Cp4.1LG14g06560 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 9  VKLTEHRNFTSKFSLKKYHQSESRVVRISVTDPDATDSSSDEEE------LFERQRVKKY 68
          +K TEH+  T+    +  +  ++R++RISVTDPDATDSSSD+EE      + +R+RVKK+
Sbjct: 12 IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query: 69 INEIKIQSG 72
          +NE+ + SG
Sbjct: 72 VNEVYLDSG 80

[Close]
BLAST of Cp4.1LG14g06560 vs. Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-09
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 8  PVKLTEH----RNFTSKFSLKKYH--QSESRVVRISVTDPDATDSSSDEEE-LFERQRVK 67
          PVK TEH    R +T K S+++    +  +R+VR+S+TD DATDSSSDEEE LF R+RVK
Sbjct: 11 PVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVK 70

Query: 68 KYINEIKIQ 70
          + INEI+++
Sbjct: 71 RLINEIRVE 79

[Close]
BLAST of Cp4.1LG14g06560 vs. Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.0e-09
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 6  FCPVKLTEHRNFTSKFSLKKYHQSES----RVVRISVTDPDATDSSSDEEE---LFERQR 65
          F P+K TEH+   +K++ K   +       + V I  TDPDATDSSSDE+E   LF R+R
Sbjct: 7  FRPLKYTEHKTSMTKYTKKSSEKLSGGKSLKKVSICYTDPDATDSSSDEDEEDFLFPRRR 66

Query: 66 VKKYINEIKIQSGCRN 75
          VK+++NEI ++  C N
Sbjct: 67 VKRFVNEITVEPSCNN 82

[Close]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match: A0A0A0LB30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G357110 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-63
Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQQPPPPFADDQ 145
           VE ANI S SGSYYDSSEESHNLSSPTSVLHFRTPSPEE+EKP K D+ Q+PP PF DDQ
Sbjct: 174 VETANIPSVSGSYYDSSEESHNLSSPTSVLHFRTPSPEESEKPPKSDDLQKPPAPFVDDQ 233

Query: 146 FHECQVKTTISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFEESIWNEDFSEFFTNLP 205
           FHECQ +T+ + EY+TEFPRFD  FK P PE+PIF+D+QPLFFE+SIWN+DFSE FTNLP
Sbjct: 234 FHECQGETSFTEEYHTEFPRFDYDFKFPSPEAPIFLDDQPLFFEDSIWNDDFSEIFTNLP 293

Query: 206 EDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
           EDFG+PLLSS I QGGDDYFQDILMGSDPLVVL
Sbjct: 294 EDFGSPLLSSSIGQGGDDYFQDILMGSDPLVVL 326

[Close]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match: M5XEE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008720mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 75/166 (45.18%), Postives = 93/166 (56.02%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHN-LSSPTSVLHFRT-PSPEETEKPQKPDESQQPPPPFAD 145
           VE+ N  + SGS YDS  ESHN LSSPTSVLHFRT P  EE  +PQK     Q      D
Sbjct: 160 VEITN-GTTSGSGYDSGSESHNNLSSPTSVLHFRTQPKMEEAHEPQKLQVFDQVMQECED 219

Query: 146 DQFHECQVKTTISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFE-----------ESI 205
           +      V   + +    + P  DDVF  P P+SP+F D  P+FF+           E +
Sbjct: 220 ETCTNF-VSDDLGNYLPLDLPYLDDVFSFPAPDSPLFFD-TPMFFDDDATAAAATLPECL 279

Query: 206 WNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
             EDFS+ F +  +   +P  SS + QGG+DYFQDIL GSDPLVVL
Sbjct: 280 LKEDFSDMFRDTYDTSLSPTTSS-MCQGGEDYFQDILFGSDPLVVL 321

[Close]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match: W9R5J7_9ROSA (Ethylene-responsive transcription factor CRF4 OS=Morus notabilis GN=L484_011468 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 84/174 (48.28%), Postives = 97/174 (55.75%), Query Frame = 1 

Query: 89  ANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQ-----QPPPPFAD 148
           A+ AS S S YDS +ES NLSSPTSVLHFRT S EE E PQKP E       QP    A 
Sbjct: 197 ASSASASVSGYDSGDESRNLSSPTSVLHFRTHSTEEAEAPQKPVEPLEAEVCQPLLLKAP 256

Query: 149 DQ---FHECQVKTTIS---SEYY-TEFPRF-DDVFKLPIPESPIFVDEQPLFFE------ 208
            Q     ECQ +T+I+    EY+  +FP F DDVFK   PES    +   LF E      
Sbjct: 257 KQVMIVEECQGETSIADDLGEYWPLDFPSFDDDVFKFESPESETLFEPSFLFDENDDVSA 316

Query: 209 -----ESIWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
                ES+  EDFS+ F +  E    PL S+  +  GDD FQDIL GSDPLVVL
Sbjct: 317 ITSLPESVLKEDFSDMFLDSFETSSPPLPSA--AWQGDDLFQDILFGSDPLVVL 368

[Close]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match: A0A061G219_THECC (Ethylene-responsive transcription factor, putative OS=Theobroma cacao GN=TCM_015336 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 76/175 (43.43%), Postives = 99/175 (56.57%), Query Frame = 1 

Query: 78  PSCRKRSAVEVANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETE-KPQKP----- 137
           P+   +   E+ N+AS SG Y    E SHNLSSPTSVL+FRT S EET  +P+KP     
Sbjct: 190 PAKENKEKPEIINVASVSG-YESGDESSHNLSSPTSVLNFRTQSSEETAVEPEKPVQELQ 249

Query: 138 DESQQPPPPFADDQFHECQVKTTI-----SSEYY-TEFPRFDDVFKLPIPESPIFVDEQP 197
           +E  +PPP        ECQ +T       S +Y   +FP  D+ F +P+P   +F D   
Sbjct: 250 EEESKPPPVQEQVVPSECQGETGTNLPDDSGDYLPLDFPFLDEFFNIPVPGLSLFDDTAT 309

Query: 198 LFFEESIWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDI--LMGSDPLVVL 239
           +  E S+++EDFS    + P+DFG    SS ISQ  DDYF+DI  L  SDPLV L
Sbjct: 310 ILPESSVFSEDFSNMLLDTPQDFGCS-SSSSISQ-VDDYFEDIGDLFFSDPLVAL 361

[Close]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match: D5L0Z7_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D13 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 76/175 (43.43%), Postives = 96/175 (54.86%), Query Frame = 1 

Query: 85  AVEVANIASGSGSYYDSSEESHNLSSPTSVLHFRT-PSPEETEKPQKPDESQQPPPPFAD 144
           ++EV    + S S YDS  ESHNL+SPTSVLHFR+ PS E+  KPQK     +      D
Sbjct: 190 SIEVETNGTTSASGYDSGSESHNLASPTSVLHFRSQPSIEDAGKPQKIQVFDR-----VD 249

Query: 145 DQFHECQVKTTISSEYYTEF--------PRFDDVFKLPIPESPIFVDEQPLFFE------ 204
           +   E +  T I S+  + F        P FDD F  P PESP+F  + PLFF+      
Sbjct: 250 EDEDETETGTNILSDDLSYFGNYLPLDLPYFDDAFSFPAPESPLF--DSPLFFDDVPAAA 309

Query: 205 ----ESIWNEDFSEFFTNLPEDFGTPL--LSSPISQGGDDYFQDILMGSDPLVVL 239
               +    +DFSE    L + + T L   +SP+ Q GDDYFQDIL GSDPLVVL
Sbjct: 310 ASLPDCFMKDDFSEL---LRDTYDTSLSHTTSPMFQ-GDDYFQDILFGSDPLVVL 353

[Close]
BLAST of Cp4.1LG14g06560 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-10
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 9  VKLTEHRNFTSKFSLKKYHQSESRVVRISVTDPDATDSSSDEEE------LFERQRVKKY 68
          +K TEH+  T+    +  +  ++R++RISVTDPDATDSSSD+EE      + +R+RVKK+
Sbjct: 12 IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query: 69 INEIKIQSG 72
          +NE+ + SG
Sbjct: 72 VNEVYLDSG 80

[Close]
BLAST of Cp4.1LG14g06560 vs. TAIR10
Match: AT4G27950.1 (AT4G27950.1 cytokinin response factor 4)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-10
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 8  PVKLTEH----RNFTSKFSLKKYH--QSESRVVRISVTDPDATDSSSDEEE-LFERQRVK 67
          PVK TEH    R +T K S+++    +  +R+VR+S+TD DATDSSSDEEE LF R+RVK
Sbjct: 11 PVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVK 70

Query: 68 KYINEIKIQ 70
          + INEI+++
Sbjct: 71 RLINEIRVE 79

[Close]
BLAST of Cp4.1LG14g06560 vs. TAIR10
Match: AT5G53290.1 (AT5G53290.1 cytokinin response factor 3)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 

Query: 6  FCPVKLTEHRNFTSKFSLKKYHQSES----RVVRISVTDPDATDSSSDEEE---LFERQR 65
          F P+K TEH+   +K++ K   +       + V I  TDPDATDSSSDE+E   LF R+R
Sbjct: 7  FRPLKYTEHKTSMTKYTKKSSEKLSGGKSLKKVSICYTDPDATDSSSDEDEEDFLFPRRR 66

Query: 66 VKKYINEIKIQSGCRN 75
          VK+++NEI ++  C N
Sbjct: 67 VKRFVNEITVEPSCNN 82

[Close]
BLAST of Cp4.1LG14g06560 vs. TAIR10
Match: AT4G11140.1 (AT4G11140.1 cytokinin response factor 1)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 32 RVVRISVTDPDATDSSSDEEELFE-------RQRVKKYINEIKIQSGCRNSLLPSCRKR 84
          R++RISVTDP ATDSSSDEEE  +       R+RVKKY+ E+ + S   +   P  +KR
Sbjct: 11 RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDSVVSDKEKPMKKKR 69

[Close]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match: gi|449463464|ref|XP_004149454.1| (PREDICTED: ethylene-responsive transcription factor CRF4 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 4.2e-63
Identity = 122/153 (79.74%), Postives = 135/153 (88.24%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQQPPPPFADDQ 145
           VE ANI S SGSYYDSSEESHNLSSPTSVLHFRTPSPEE+EKP K D+ Q+PP PF DDQ
Sbjct: 174 VETANIPSVSGSYYDSSEESHNLSSPTSVLHFRTPSPEESEKPPKSDDLQKPPAPFVDDQ 233

Query: 146 FHECQVKTTISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFEESIWNEDFSEFFTNLP 205
           FHECQ +T+ + EY+TEFPRFD  FK P PE+PIF+D+QPLFFE+SIWN+DFSE FTNLP
Sbjct: 234 FHECQGETSFTEEYHTEFPRFDYDFKFPSPEAPIFLDDQPLFFEDSIWNDDFSEIFTNLP 293

Query: 206 EDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
           EDFG+PLLSS I QGGDDYFQDILMGSDPLVVL
Sbjct: 294 EDFGSPLLSSSIGQGGDDYFQDILMGSDPLVVL 326

[Close]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match: gi|659077675|ref|XP_008439327.1| (PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 3.0e-61
Identity = 122/154 (79.22%), Postives = 133/154 (86.36%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQQPPPPFADDQ 145
           VE  NI S SGSYYDSSEESHNLSSPTSVLHFRTPSPEE+EKP K D+ Q+PP PF DDQ
Sbjct: 174 VETTNIPSVSGSYYDSSEESHNLSSPTSVLHFRTPSPEESEKPPKSDDLQKPPAPFVDDQ 233

Query: 146 FHECQVKTTISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFEESIWNEDFSEFFTNLP 205
           FHECQ +T+ S EY+TEFPRFD  FK P PESPIF+D+QPLFFE+SIWN+DFSE FTNLP
Sbjct: 234 FHECQGETSFSEEYHTEFPRFDYDFKFPSPESPIFLDDQPLFFEDSIWNDDFSEIFTNLP 293

Query: 206 EDFGTPLL-SSPISQGGDDYFQDILMGSDPLVVL 239
           EDFG+PLL SS I QGGDDYFQDIL GSDPLVVL
Sbjct: 294 EDFGSPLLSSSSIGQGGDDYFQDILTGSDPLVVL 327

[Close]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match: gi|645258228|ref|XP_008234789.1| (PREDICTED: ethylene-responsive transcription factor CRF4 [Prunus mume])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 76/173 (43.93%), Postives = 96/173 (55.49%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHN-LSSPTSVLHFRT-PSPEETEKPQKPDESQQPPPPFAD 145
           VE+ N  + SGS YDS  ESHN LSSPTSVLHFRT P  EE  +PQK            D
Sbjct: 198 VEITN-GTTSGSGYDSGSESHNNLSSPTSVLHFRTQPKMEEAHEPQKLQ--------VFD 257

Query: 146 DQFHECQVKTT-------ISSEYYTEFPRFDDVFKLPIPESPIFVDEQPLFFE------- 205
               EC+ +T        + +    +FP  DDVF  P P+SP+F D  P+FF+       
Sbjct: 258 QVMQECEDETVTNFASDDLGNYLPLDFPYLDDVFSFPAPDSPLFFDT-PMFFDDDATAAA 317

Query: 206 ----ESIWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
               E +  E+FS+ F +  +   +P  SS + QGG+DYFQDIL GSDPLVVL
Sbjct: 318 ATLPECLLKENFSDMFRDTYDTSLSPTTSS-MCQGGEDYFQDILFGSDPLVVL 359

[Close]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match: gi|694385749|ref|XP_009368689.1| (PREDICTED: ethylene-responsive transcription factor CRF4-like [Pyrus x bretschneideri])

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-19
Identity = 76/172 (44.19%), Postives = 94/172 (54.65%), Query Frame = 1 

Query: 86  VEVANIASGSGSYYDSSEESHNLSSPTSVLHFRT-PSPEETEKPQKPDESQQPPPPFADD 145
           +EV    + S S YDS  ESHNL+SPTSVLHFR+ P  EE +KPQK   S +      D+
Sbjct: 191 IEVGTNGTTSASGYDSGSESHNLASPTSVLHFRSQPIIEEADKPQKFQVSNR-----VDE 250

Query: 146 QFHECQVKTTISSEYYTEF--------PRFDDVFKLPIPESPIFVDEQPLFFEES----- 205
              E +  T I S+  + F        P FDD F  P PESP+F  + PLFF++      
Sbjct: 251 DEDETETGTNILSDDLSYFGNYLPLDLPYFDDAFSFPAPESPLF--DSPLFFDDGPAAAA 310

Query: 206 -----IWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
                   +DFSE F +   D      +SP+ QG DDYFQDIL GSDPLVVL
Sbjct: 311 SLPDCFMKDDFSELFRDT-YDTSLSHTTSPMFQG-DDYFQDILFGSDPLVVL 353

[Close]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match: gi|703103956|ref|XP_010097869.1| (Ethylene-responsive transcription factor CRF4 [Morus notabilis])

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 84/174 (48.28%), Postives = 97/174 (55.75%), Query Frame = 1 

Query: 89  ANIASGSGSYYDSSEESHNLSSPTSVLHFRTPSPEETEKPQKPDESQ-----QPPPPFAD 148
           A+ AS S S YDS +ES NLSSPTSVLHFRT S EE E PQKP E       QP    A 
Sbjct: 197 ASSASASVSGYDSGDESRNLSSPTSVLHFRTHSTEEAEAPQKPVEPLEAEVCQPLLLKAP 256

Query: 149 DQ---FHECQVKTTIS---SEYY-TEFPRF-DDVFKLPIPESPIFVDEQPLFFE------ 208
            Q     ECQ +T+I+    EY+  +FP F DDVFK   PES    +   LF E      
Sbjct: 257 KQVMIVEECQGETSIADDLGEYWPLDFPSFDDDVFKFESPESETLFEPSFLFDENDDVSA 316

Query: 209 -----ESIWNEDFSEFFTNLPEDFGTPLLSSPISQGGDDYFQDILMGSDPLVVL 239
                ES+  EDFS+ F +  E    PL S+  +  GDD FQDIL GSDPLVVL
Sbjct: 317 ITSLPESVLKEDFSDMFLDSFETSSPPLPSA--AWQGDDLFQDILFGSDPLVVL 368

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g06560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRF2_ARATH4.6e-0946.38Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE... [more]
CRF4_ARATH4.6e-0953.62Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE... [more]
CRF3_ARATH6.0e-0944.74Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE... [more]
BLAST of Cp4.1LG14g06560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB30_CUCSA2.9e-6379.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G357110 PE=4 SV=1[more]
M5XEE7_PRUPE1.3e-1845.18Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008720mg PE=4 SV=1[more]
W9R5J7_9ROSA1.3e-1848.28Ethylene-responsive transcription factor CRF4 OS=Morus notabilis GN=L484_011468 ... [more]
A0A061G219_THECC2.2e-1843.43Ethylene-responsive transcription factor, putative OS=Theobroma cacao GN=TCM_015... [more]
D5L0Z7_MALDO3.7e-1843.43AP2 domain class transcription factor OS=Malus domestica GN=AP2D13 PE=2 SV=1[more]
BLAST of Cp4.1LG14g06560 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23750.12.6e-1046.38 cytokinin response factor 2[more]
AT4G27950.12.6e-1053.62 cytokinin response factor 4[more]
AT5G53290.13.4e-1044.74 cytokinin response factor 3[more]
AT4G11140.11.7e-0649.15 cytokinin response factor 1[more]
BLAST of Cp4.1LG14g06560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463464|ref|XP_004149454.1|4.2e-6379.74PREDICTED: ethylene-responsive transcription factor CRF4 [Cucumis sativus][more]
gi|659077675|ref|XP_008439327.1|3.0e-6179.22PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis melo][more]
gi|645258228|ref|XP_008234789.1|2.2e-1943.93PREDICTED: ethylene-responsive transcription factor CRF4 [Prunus mume][more]
gi|694385749|ref|XP_009368689.1|2.8e-1944.19PREDICTED: ethylene-responsive transcription factor CRF4-like [Pyrus x bretschne... [more]
gi|703103956|ref|XP_010097869.1|1.8e-1848.28Ethylene-responsive transcription factor CRF4 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017392AP2/ERF-transcript_factor
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g06560.1Cp4.1LG14g06560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017392AP2/ERF transcription factor ERF/PTI6PANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 1..70
score: 1.3
NoneNo IPR availablePANTHERPTHR31194:SF16SUBFAMILY NOT NAMEDcoord: 1..70
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g06560Cucsa.012850Cucumber (Gy14) v1cgycpeB0530
Cp4.1LG14g06560CmaCh16G000780Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g06560CmaCh18G012940Cucurbita maxima (Rimu)cmacpeB425
Cp4.1LG14g06560CmoCh18G013230Cucurbita moschata (Rifu)cmocpeB386
Cp4.1LG14g06560CmoCh16G000820Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g06560Cla004223Watermelon (97103) v1cpewmB227
Cp4.1LG14g06560Csa3G357110Cucumber (Chinese Long) v2cpecuB207
Cp4.1LG14g06560MELO3C006973Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g06560ClCG05G008650Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g06560CSPI03G22130Wild cucumber (PI 183967)cpecpiB210
Cp4.1LG14g06560Lsi05G000690Bottle gourd (USVL1VR-Ls)cpelsiB178
Cp4.1LG14g06560MELO3C006973.2Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g06560CsaV3_5G000710Cucumber (Chinese Long) v3cpecucB0275
Cp4.1LG14g06560CsaV3_5G002210Cucumber (Chinese Long) v3cpecucB0278
Cp4.1LG14g06560CsaV3_3G021840Cucumber (Chinese Long) v3cpecucB0259
Cp4.1LG14g06560Bhi01G001062Wax gourdcpewgoB0296
Cp4.1LG14g06560CsGy3G021180Cucumber (Gy14) v2cgybcpeB329
Cp4.1LG14g06560Carg15088Silver-seed gourdcarcpeB1376
Cp4.1LG14g06560Carg20360Silver-seed gourdcarcpeB0761
Cp4.1LG14g06560Carg14033Silver-seed gourdcarcpeB0714
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g06560Cp4.1LG09g00450Cucurbita pepo (Zucchini)cpecpeB023
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g06560Cucurbita pepo (Zucchini)cpecpeB197
Cp4.1LG14g06560Cucurbita pepo (Zucchini)cpecpeB242
Cp4.1LG14g06560Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g06560Cucurbita pepo (Zucchini)cpecpeB254
Cp4.1LG14g06560Cucumber (Gy14) v1cgycpeB0573
Cp4.1LG14g06560Cucurbita maxima (Rimu)cmacpeB307
Cp4.1LG14g06560Cucurbita maxima (Rimu)cmacpeB608
Cp4.1LG14g06560Cucurbita moschata (Rifu)cmocpeB270
Cp4.1LG14g06560Cucurbita moschata (Rifu)cmocpeB557
Cp4.1LG14g06560Wild cucumber (PI 183967)cpecpiB227
Cp4.1LG14g06560Cucumber (Chinese Long) v2cpecuB225
Cp4.1LG14g06560Bottle gourd (USVL1VR-Ls)cpelsiB163
Cp4.1LG14g06560Watermelon (Charleston Gray)cpewcgB199
Cp4.1LG14g06560Watermelon (97103) v1cpewmB229
Cp4.1LG14g06560Melon (DHL92) v3.5.1cpemeB179
Cp4.1LG14g06560Cucumber (Gy14) v2cgybcpeB321
Cp4.1LG14g06560Cucumber (Gy14) v2cgybcpeB617
Cp4.1LG14g06560Melon (DHL92) v3.6.1cpemedB215
Cp4.1LG14g06560Melon (DHL92) v3.6.1cpemedB225
Cp4.1LG14g06560Wax gourdcpewgoB0285