Cp4.1LG14g05680 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g05680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing family protein
Location	Cp4.1LG14 : 854399 .. 862675 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACCTTTCGCGCCTTCCTGTTCTCGCTCAGTTTCTCTTCTCAGTTCTCAGTTTTGCTCTTCCTTATGTAATCTTCAGGCCTCCAAAGCTGCCGGAGTTTATTGCAGGTATTCTTATGTAATTCCGGTGTTTAATTTATTGGCCTTTCAAGCTCTTGTTCTCTTTCAGTTTCTGTTATACTCAATCCTTCTCGGAGCCATTATTTGAACCGAATATTGGAGTTGTAATTTCGTCATGTTTTGATGGAGTCTTCATCGTTCCTCACTAGGTTTACTACGTGAACTCAACTTGCCCCTAATGCCATACTGTTGCTTGTTGTTACTAGCATTGCGTTTTAGAGATGATACGGGGACGGCCCTGTAAATATTACCTCTCTGTGAACTTCAGGAATCTGGTGACGACTTGTACAGTCCCACTTGATCCTCCAGTTACTTCGAGTTCCTCTTCTGCTAGCGAACACAAGACTTTGTGCTATTCCTTAGTGGAGCGACTAATTCGTCGTGGCTTGTTTTTGCCGGCGCAACAAGTGATACAACGAATTGTAACGCAATCTTCTTCAATTTCTGAAGCTATTTCTATTGTTGACTTCGCTGCTGAACGGGGTTTGGAGATTGATTTGGATACCCATGGTGTGTTTTGCCGGCAGCTTGTCTATTCTAGGCCCCAGTTGGCTGAACTGCTGTACGACAAAAAATTTACATTCGGAGGTGCTGAGCCAGATGCGTCAGTTTTGGACTCTATGGTAATCTGTTTCTGTAGGCTAGGAAAATTTGAGAAGGCACTGGCCTATTTTAATCAACTTCTGTCGTTAAATTACGTCCCAAGTAAAACTTCATTTAATGCTATCTTTCGAGAGCTTTGTGCGCAAGAAAGGGTTTTAGAGGCATTCGACTATTTTGTGAGAGTCAATGGAGGTGGTGTTCACTTGGGGTATTGGTGTTTTAATGTCTTGATAGATGGGCTATGCAATAAGGGGCATATGGAGGAAGCTCTTGAATTATTTGATATAATGCAAAACACTAATGGTTATCCTCCGTCGCTGCATTTGTTTAAGTCATTATTTTATGGCCTTTGTAAGAGCAAGTGGTTAGTGGAGGCAGAGTTGTTGATCAGAGAAATGGAGTTTCGGAGCCTATATCCTGACAAGACTATGTATACTTCTTTAGTTCATGAATATTGCAAAGATAAGAAAATGAAAATGGCAATGCAAGCCTTTTTTAGAATGATAAAAATAGGCTGTGAACCAGATAATTATACATTAAATACACTGATCCATGGGTTTGTGAAATTGGGTTTAGTCGATAAGGGTTGGTTGGTATATAACCTTATGGCAGAGTGGGGAATCCAACCTGATGTGGTAACTTTTCACATCATGATTAGTCAGTATTGTCAAGAAGGGAAGGTTGACTTTGCATTAACGATTTTGAATAATATGGTCAGCTGCAACTTTTCTCCTAGCTTGCATTGTTATACAGTTTTGATTAATGCTCTGCATAGGGATGATAGGTTAGAAGAAGTCAGTGAATTGCTTAGGAGTATCTTGGACAATGGAATTGTACCTGATCACGTGCTTTTCTTTACCCTTATGAAGATGTATCCAAAGGGACATGAACTTCAGCTTGCTTTAAATTTTTTGGAAGCCATTTTAAAGAATGGGTGTGGGTGTGATCCTTCTGTAATCTTAGCCAGTACAAAGTTACAAACATCAAGCAATCTGGAGCAAAAAATTGAAACGCTGCTGCAAGAAATTTTCAATAGCAACTTGAATCTAGCAGGTGTGGCATTTAGTATTGTCATTTGTGCCTTATGTGAGACCGAAAATTTGGATTGTGCTTTGGATTACTTCCATAAAATGGCAAGTCTTGGATGCAAGCCTTTGCTCTTTACTTATAATTCCTTGATTAAATGTCTTTGCAAGGAGGGGCTTTTTGAGGATGCCTTGTCTCTAATTGATCATATGCAGGAATGTAGTTTGCTTCCTGATACCACAACATATTTGATTATTATTAACGAGCATTGTAGGAAGGGTAATGTTAACTCAGCACATTATATTCATAGAAAAATGAGGCAGAGGGGATTGAAACCGAGTGTTGCTATTTATGATTCAATAATTGGTTGTTTAAGTAGGAAAAAGAGAATTTTTGAAGTAAAAGGAGTTTTTAAGAAGATGCTTAAAGCGGGTGTGGATCCGGATAAGCATTTGTATTTGACAATGATTAATGGCTATGGTAAAAATGGAAAGCTTCTTGAAGCTCGTAAATTGTTTGAGCAAATGGTTGAGAACTCTATTCCACCAAGCTCTCATATTTATACGGCACTGATTAGTGGTTTGGTTAAAAAAAATATGACTGATAAAGGATGTTTATATCTGGGCAAGATGTTAAGAGATGGGTTTTCACCTAATGCTGTATTGTATACCTCTCTTATCAATCATTACCTAAAGATCGGGGAGGTTGAATATGCCTTTCGATTAGTTGATTTGATGGAAAGGAGCCACATTGAACCCGATGTTATCTTCTATATCACATTAGTCAGTGGTATTTGCAAAAATTTAATTGTCGACAAGAAAAAATGGTTCCTGCTAGAGAAAGAGAATCAAAAGGCAAAAAGTACGTTGTTTCGTATGCTCCATGAAACAACTCTTGTTCCAAGGGATAATAATATGATAGTTTCTGCTAATTCTACTGAAGAAATGAAATCCTTTGCATTGAAGCTTATCCAGAAGGTTAAAGATGTATGCATTGTACCTAACTTGCATCTGTACAATAGCATAATATGTGGATATTGTCGGACAGATAGGATGCTGGATGCCAATCATCAGTTGGAATTGATGCAAAAAGAAGGGTTGCATCCAAACCAGGTTACTTTCACGATTCTTATGGATGGTTATATTCTTGCAGGTGATGTTAACTCTGCCATTGGGTTGTTTAATAAGATGAATGTAGATGGGTGTATTCCAGATAAAGTTGCATACATCACTTTACTGAAAGGCCTTTCCCAAGGAGGGAGACTTTCTGATGCATTGGCACTCCACGTACAATGCATAAAAAAGGGTTTTCCCCAAGTATACTAGGTTATCGTAATTTTGTGAGGAATTGATGCATGGTAAACTCTTGCCTCACTGGAAAAGATGATCGGCCGTCTACATCCTGTGTGGAGAAAATCATTGCAGGAAGCCTGTTTTGCTTTTAATATAAAGCTTGAGAGGAGCACACATAAAAAGAAAAACCAAATAGGTATTTGGTGGATTCATGGATGAAATTAGATGGGTCATCATGGTATAAAATGCATATCAAGACAGACTCAGACATGACACAATCATTGAAAACGGAGGTTAGTGATGAAGATTCACATGGATTCTCTTTATTTCCCCTCTTAACCTTTTCCTGTTGCCTTTCTGGTCACTATTTTTGTACAAGTTTTTTTTTTTTTTTTTTTGAACAAGACCTATCCAGTCAATATATATATATACATATACATATATTANACTATTTTTGTACAAGTTTTTTTCTTTATTTTTCTATTTTGACCCCAAATTTTGACATATTTTTAACTATTAATTTCAATTTAATTATTTTGATCCTTTCTTTATTTTACCTTNAGTCAATATATATATATACATATACATATATTATTGCAGATGTTCATTTGTAGCCGTTTGACATTAGCAAGATCCTTGTCTGCAACACTTTCCCATGGAAATCTTGGAATTTGCAATGTATAGGTAATTTGAATATTAACTTATTGCACATATGTAATTAAATTTTCGTACCAACTTTTGGCTTATTACCTTGTACACGATGAACAGAAGTGCATGCCATGTAAATAATTTCTTACAAAAGAATAATAATAATAAATAAATGTTATTATGTTTCAGAACTCGAACAAAAGTAAGACATTATTTTACAAGTGTTTGACCTATGTCGGAGATCCTTCCTGATATCAAAGATGGACAAATGGGCTATGTTCAAAAGATATATAGAGGTTGTTTACGTCCAATCCCAAAAGACGATCTTTTATGGATGAGAGTTATCATTCGAACTTATAGGTTGGGTACTCTGGGCTGTGCATAAGAATTTCTTTGATAGGGCTATATGGGGCCTTGGTACCACAAGTGCTATACATTGTGGGAGAAGTTGATTAGCCACAAGATTGGGTTGGCAAATTGTATCGGGTTTCAGGGAGATACTTGTTGTAAATTGTCATAAGTTTTGATTTGATTTGGTTAGGTTATTTGGATTAGATTTGATTGGGTTATTTAGATTAGATTTGATTTGGTTATTTGGATTAGATTTGATTTGATTATTTGAATTAGATTTAGTCTCAGTCATATCGGAGATTTGATTCTGTAATGCTATATAATGAGAGAGTTCTCCCTCCATTCTTAATATCCATTCCTAACAAGTGGTATCGGGATTTGGGAGACTTTTGGGTGTCACATCGTATTTGTTGAGTGACATATTGGTGAGAGACTTTGTAGTGTGAAAGTGAGGCATTCACTTGTAACACTTGGGGTTATTAGTGATTGATTGCTACCCGTAGCTGTAGGGAAACTTCTTCTCTCCGAACCACGTAAATATCTTGGTGTCTCTTTGTGTAATTCCGTTCATTGTTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAATACTTTGGTTGACCATCGCCCCTCTAGAACTAGAACCTTGTTGTGCTCTGGGCTATACAACACTACTTGCTAATAATCTCCTCTGCAATTTGATTGATATTTGTTTCATGTGAAACACACTTGGTCTTCTTCAAAAATTTTTTTTATGGTCTATTGTTCTTTGCATACTTATTTTATCTAACGCTTGGTTTTCATAAATTCAGTAAAAAAGTATAATTAAATTAAAGTATTGCCTCAAATTGTGGTACCAATTAAGTTTATTTTACGTAATTGGTAACCTTTACTTTTTTAAAATTCTAACCATGTAATACCCTCGTTTTGAATTTGTATATTCTTCAGCATGGAACAGCTAGGGGGAAATGTGCTTGCCAACATTGGCTTTTGATGTTTGCTATTTTACTCTTAGAGTTTAGTTTATATATATAGCTATTCTTCGGTTGTAATTGTGTTGAGAAATTCAATAATGAATTTTAGCTAGAGAGGCTTTCTCCTGAGATTTGGTTCTACTGAGATATTAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCTCAATAGTGATTTGCAGTGTAATTGGAAATGGGTTTGTCGTTTGCTAGTTCTGATTTTATTAATGTAACTTTTCAATTTACATATATATGAGCTTGAATAATGATTTCTTAAATGTGCGTACAGAGATTAAAGAATCAAATGACGTGGTTATATTTATTTCAGAGGAAGAATGTAGAAAACCTATTCTCCAAGCGGAGTGAATGGGACCTCTGTCTGGCAACAATAACTGCCTTGCAAATGAAATTTTTGACGGTGAAAGGCGATACCTCCATTGAATTGCTTGTAACACGGTAACCTTTCCAGTCATTCTCTGGCTAGTTGATGAACAAGGAGGTAAGCTTTGTGGAAAACTGTTTGAGATTACTCCTTCCACGGCCTTCCCAAGTAGGTTTTCACTGTCTTCTCCATTTGTTTTGGTACATCTGTGGCCATGACCCTTGAATTGTGGATTGAAATGCCAGTATTCTGACCATTCATTGACCTTTTTGTTAAATCATGCAGTTCTGTAGAATAACTGCAGCATTGCCAAATATAAAATCTACAGTGCCGTAAATATAACACTACTTATAGAGCTATCTTCGAAAATGGACATGAAGGGTTTCTTGATACCCTTCAAAGGCACAACGGTAGAAGACAGAAAGATCTGCGCCAGATCGGAGAGCAATTGCTTGATGGTTTCCAGGACCAGTGGTGTTCCGGAATGTGATGCCTCGAGCTATAAATCCTTCACCTGTCACCGCTGATTGTCTCAGAGTACAAGTATCTCTCGTTAAACATATACTCTTCACATTTTCGGCTTTTTGAAAAATAACCAAATTTTCGAGTTTTTTTGTATGAAAGTGGTAAATGTGATTTCATATTGCCATTTTTGGAATCTATAAAAGAAAGTGACAATGTATATTACTGATTGAAACTTGACAGCCATACGATGTATACGATGATGCATTTATGATGAAATTCGATAAATTTTGTTTTTGCTATTTTTATATTGATATTGACAAAGATGGCTGCCACTAATAATTCTATTCTCATTGGAAATGAAGGAAAGGAGAAAAGGAGAAAATTTCAAGCACCATGCCTTGGAATGGAAGAAAAGTAATTCTAGACGATAAAGTTGCCAGGTAGAGTTGATGGACTTGGAACGAGAAAAATATGTAGGTCGACATGTTATAATGTCATTATAATGGAGGAAAATGAGCTTATAAGCAGTAGTCAACCCAGAGAGAGTCTTACCAACAGTAGCAGAATTGAAAGGGGTGGAACCTCCTCCTATGTTACCAGTAATGAAGGTAAATCTCATTCCATTTATCTTGTTTCTGTCCGGATTTAGTGCAACTTTTTGCTAGTTTGAATTAGTCAAGATATTCGTAATCTGTCAATATTTGAAGAATATATTAGTTATGGAATATATCTTACATATTCGTAATCAGTTAGTATTTTTCTTTTTATGATTTCATTAGTAGTATATTTTATTTTATTCTCAAGATTTAGTTAGTTTATATTTTCCTTATTTGTAGGTATTAGTGGGTAGCTTCTATCCTATTTAAACGTTGTGAATATCAATGTGAATATCAATGAAGATTGAACCTTCGATCCCAATTTTATTTCTCATTCTTAACTCTATTGTTTCCTTGAGTAATAATATTTTCAGATCTATTCACACTTTTGAGTTGTAGACATTGGGTCAGTTGGTATCATAGCCAAGTTGGTAACCAAAGGTTTGATATTATTACTCAACGAGATGAATGGTGGAAGTGCTTCTATGAGTATAGCTGTGGAAAAGCTTATTGGCAATAATTATAATTATTGGAAGTTATGTATGGAAGGTTATCTACAAGAGCAAGATTTGTGGGATTTAATTTAAGGTCATGACACAGAAATTCCAACAGATACTCCACATAATGCTGAATTACGTCGAAAATGGAAGATCAAATGTGGAAAAGCTTTATTTACTTTGAGAACCTATATATTGATTTCGTGACTTTAAATCACGAACATGATTAATATATTCATTGCTAATCAAAGTTCGCAAGGTAAATAAAGTTTTTCCACATTTGATCTTCCATTTTTGGCGTAATTCAACATTATGTGGAGTATTTGCTGGAATTTCTGTGTCTATCACCTTCATAGAAGCACTTCCACCATTCATCTCATTGAGTAATAGTATCAAACCCTGGTTACCAACTGACACAATGTCGCGTGAATAGATATGAAAATATTATTACTCAAGGAATCAAGGAAACAATACAGAGTTAAGAATGAGAAATAGAATTGGGGTGAATAGATATAAAAATATTATTACTCAAGGAATCAAGGAAACAATACAGTGTTAAGAATGAGAAATAGAATTGGGGTGAATAGATATGAAAATATTATTACTCAAGGAAACAATATAGAGTTAAGAATGAGAAATAGAATTGGGATCGAAGGCTCAATCTTCGTTGATATTCACAACCTTTAAATACGATACAAGCTACTCATTAATACCTACAAAAAGGAAAATATAAACTAACTAACTAACTAAATCTTGAGAATAAAATAAAATATGTTACTAATCAAATCATAAAGGAAAAATATTAACTGATTACGAATATCTAAGATATATTTCATAACTAATATATTCTCCAAATATTAACTGATTACGAATATCTTGATTAATTCAAACTAGCAATAAGTTGCACTAAATTCTAATAGCCTCACAGAGTGGAAACTTATTTCTCAATAACTTTGAGAGCCTTACAAAAAAAACTTCAATTACTTGTAAACCCCTCTCTGTTACTTGTATAACAAACTCCCATTCATGTTCCTCTTCGCAGCTTCCTCTAGAGCCTCTCCTACTATCTTCTGGTTACCCGACCTGTCCTGAGCCACCTCAAGGTCCGACTTTGTTGATGACTGCAGTATCCTCTTGTCACCACCTAAAAGCCAACTTGGAAAGCCCTTTTTATATGTTTCCTTCCCCAGGCCAGCTGAAGCATTGTTAATAGCCAAGCTGTTGCTTATCAGCTTTGTGACATTGTTCGATGTGATCAGCGGCAATACATAA

mRNA sequence

ATACCTTTCGCGCCTTCCTGTTCTCGCTCAGTTTCTCTTCTCAGTTCTCAGTTTTGCTCTTCCTTATGTAATCTTCAGGCCTCCAAAGCTGCCGGAGTTTATTGCAGGAATCTGGTGACGACTTGTACAGTCCCACTTGATCCTCCAGTTACTTCGAGTTCCTCTTCTGCTAGCGAACACAAGACTTTGTGCTATTCCTTAGTGGAGCGACTAATTCGTCGTGGCTTGTTTTTGCCGGCGCAACAAGTGATACAACGAATTGTAACGCAATCTTCTTCAATTTCTGAAGCTATTTCTATTGTTGACTTCGCTGCTGAACGGGGTTTGGAGATTGATTTGGATACCCATGGTGTGTTTTGCCGGCAGCTTGTCTATTCTAGGCCCCAGTTGGCTGAACTGCTGTACGACAAAAAATTTACATTCGGAGGTGCTGAGCCAGATGCGTCAGTTTTGGACTCTATGAGCAAGTGGTTAGTGGAGGCAGAGTTGTTGATCAGAGAAATGGAGTTTCGGAGCCTATATCCTGACAAGACTATGAAAAAGAGAATTTTTGAAGTAAAAGGAGTTTTTAAGAAGATGCTTAAAGCGGGTGTGGATCCGGATAAGCATTTGTATTTGACAATGATTAATGGCTATGGTAAAAATGGAAAGCTTCTTGAAGCTCGTAAATTGTTTGAGCAAATGGTTGAGAACTCTATTCCACCAAGCTCTCATATTTATACGGCACTGATTAGTGGTTTGGTTAAAAAAAATATGACTGATAAAGGATGTTTATATCTGGGCAAGATGTTAAGAGATGGGTTTTCACCTAATGCTGTATTGTATACCTCTCTTATCAATCATTACCTAAAGATCGGGGAGGTTGAATATGCCTTTCGATTAGTTGATTTGATGGAAAGGAGCCACATTGAACCCGATGTTATCTTCTATATCACATTAGTCAGTGGTATTTGCAAAAATTTAATTGTCGACAAGAAAAAATGGTTCCTGCTAGAGAAAGAGAATCAAAAGGCAAAAAGTACGTTGTTTCGTATGCTCCATGAAACAACTCTTGTTCCAAGGGATAATAATATGATAGTTTCTGCTAATTCTACTGAAGAAATGAAATCCTTTGCATTGAAGCTTATCCAGAAGGTTAAAGATGTATGCATTGTACCTAACTTGCATCTGTACAATAGCATAATATGTGGATATTGTCGGACAGATAGGATGCTGGATGCCAATCATCAGTTGGAATTGATGCAAAAAGAAGGGTTGCATCCAAACCAGGTTACTTTCACGATTCTTATGGATGGTGATGTTAACTCTGCCATTGGGTTGTTTAATAAGATGAATGTAGATGGGTGTATTCCAGATAAAGTTGCATACATCACTTTACTGAAAGGCCTTTCCCAAGGAGGGAGACTTTCTGATGCATTGGCACTCCACATGTTCATTTGTAGCCGTTTGACATTAGCAAGATCCTTGTCTGCAACACTTTCCCATGGAAATCTTGGAATTTGCAATAGGAAGAATGTAGAAAACCTATTCTCCAAGCGGAGTGAATGGGACCTCTGTCTGGCAACAATAACTGCCTTGCAAATGAAATTTTTGACGGTGAAAGGCGATACCTCCATTGAATTGCTTGTAACACGGAAAGGAGAAAAGGAGAAAATTTCAAGCACCATGCCTTGGAATGGAAGAAAAGTAATTCTAGACGATAAAGTTGCCAGGCCAGCTGAAGCATTGTTAATAGCCAAGCTGTTGCTTATCAGCTTTGTGACATTGTTCGATGTGATCAGCGGCAATACATAA

Coding sequence (CDS)

ATACCTTTCGCGCCTTCCTGTTCTCGCTCAGTTTCTCTTCTCAGTTCTCAGTTTTGCTCTTCCTTATGTAATCTTCAGGCCTCCAAAGCTGCCGGAGTTTATTGCAGGAATCTGGTGACGACTTGTACAGTCCCACTTGATCCTCCAGTTACTTCGAGTTCCTCTTCTGCTAGCGAACACAAGACTTTGTGCTATTCCTTAGTGGAGCGACTAATTCGTCGTGGCTTGTTTTTGCCGGCGCAACAAGTGATACAACGAATTGTAACGCAATCTTCTTCAATTTCTGAAGCTATTTCTATTGTTGACTTCGCTGCTGAACGGGGTTTGGAGATTGATTTGGATACCCATGGTGTGTTTTGCCGGCAGCTTGTCTATTCTAGGCCCCAGTTGGCTGAACTGCTGTACGACAAAAAATTTACATTCGGAGGTGCTGAGCCAGATGCGTCAGTTTTGGACTCTATGAGCAAGTGGTTAGTGGAGGCAGAGTTGTTGATCAGAGAAATGGAGTTTCGGAGCCTATATCCTGACAAGACTATGAAAAAGAGAATTTTTGAAGTAAAAGGAGTTTTTAAGAAGATGCTTAAAGCGGGTGTGGATCCGGATAAGCATTTGTATTTGACAATGATTAATGGCTATGGTAAAAATGGAAAGCTTCTTGAAGCTCGTAAATTGTTTGAGCAAATGGTTGAGAACTCTATTCCACCAAGCTCTCATATTTATACGGCACTGATTAGTGGTTTGGTTAAAAAAAATATGACTGATAAAGGATGTTTATATCTGGGCAAGATGTTAAGAGATGGGTTTTCACCTAATGCTGTATTGTATACCTCTCTTATCAATCATTACCTAAAGATCGGGGAGGTTGAATATGCCTTTCGATTAGTTGATTTGATGGAAAGGAGCCACATTGAACCCGATGTTATCTTCTATATCACATTAGTCAGTGGTATTTGCAAAAATTTAATTGTCGACAAGAAAAAATGGTTCCTGCTAGAGAAAGAGAATCAAAAGGCAAAAAGTACGTTGTTTCGTATGCTCCATGAAACAACTCTTGTTCCAAGGGATAATAATATGATAGTTTCTGCTAATTCTACTGAAGAAATGAAATCCTTTGCATTGAAGCTTATCCAGAAGGTTAAAGATGTATGCATTGTACCTAACTTGCATCTGTACAATAGCATAATATGTGGATATTGTCGGACAGATAGGATGCTGGATGCCAATCATCAGTTGGAATTGATGCAAAAAGAAGGGTTGCATCCAAACCAGGTTACTTTCACGATTCTTATGGATGGTGATGTTAACTCTGCCATTGGGTTGTTTAATAAGATGAATGTAGATGGGTGTATTCCAGATAAAGTTGCATACATCACTTTACTGAAAGGCCTTTCCCAAGGAGGGAGACTTTCTGATGCATTGGCACTCCACATGTTCATTTGTAGCCGTTTGACATTAGCAAGATCCTTGTCTGCAACACTTTCCCATGGAAATCTTGGAATTTGCAATAGGAAGAATGTAGAAAACCTATTCTCCAAGCGGAGTGAATGGGACCTCTGTCTGGCAACAATAACTGCCTTGCAAATGAAATTTTTGACGGTGAAAGGCGATACCTCCATTGAATTGCTTGTAACACGGAAAGGAGAAAAGGAGAAAATTTCAAGCACCATGCCTTGGAATGGAAGAAAAGTAATTCTAGACGATAAAGTTGCCAGGCCAGCTGAAGCATTGTTAATAGCCAAGCTGTTGCTTATCAGCTTTGTGACATTGTTCGATGTGATCAGCGGCAATACATAA

Protein sequence

IPFAPSCSRSVSLLSSQFCSSLCNLQASKAAGVYCRNLVTTCTVPLDPPVTSSSSSASEHKTLCYSLVERLIRRGLFLPAQQVIQRIVTQSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMDGDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALALHMFICSRLTLARSLSATLSHGNLGICNRKNVENLFSKRSEWDLCLATITALQMKFLTVKGDTSIELLVTRKGEKEKISSTMPWNGRKVILDDKVARPAEALLIAKLLLISFVTLFDVISGNT

Homology

[Close]

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot
Match: PP443_ARATH (Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-63
Identity = 161/433 (37.18%), Postives = 243/433 (56.12%), Query Frame = 1


Query: 50  VTSSSSSASEHKTLCYSLVERLIRRGLF-LP-AQQVIQRIVTQSSSISEAISIVDFAAER 109
           V +++  +  +     S +E+++  G   LP +   + + + Q + I +  S+V+   E 
Sbjct: 482 VVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQEL 541

Query: 110 GLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIRE 169
               D+DT+ +   +L            D+   F       +++D+M +  +   + I  
Sbjct: 542 DFVPDVDTYLIVVNELCKKN--------DRDAAF-------AIIDAMEELGLRPTVAI-- 601

Query: 170 MEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQ 229
             + S+      + R+ E +  F KML++G+ PD+  Y+ MIN Y +NG++ EA +L E+
Sbjct: 602 --YSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEE 661

Query: 230 MVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGE 289
           +V++ + PSS  YT LISG VK  M +KGC YL KML DG SPN VLYT+LI H+LK G+
Sbjct: 662 VVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGD 721

Query: 290 VEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLH 349
            +++F L  LM  + I+ D I YITL+SG+ + +   KK+  ++E   +K    L R++ 
Sbjct: 722 FKFSFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVIVEPGKEKL---LQRLIR 781

Query: 350 ETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDA 409
              LV      I S+      KSFA+++I KVK   I+PNL+L+N+II GYC   R+ +A
Sbjct: 782 TKPLVS-----IPSSLGNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIITGYCAAGRLDEA 841

Query: 410 NHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKG 469
            + LE MQKEG+ PN VT+TILM      GD+ SAI LF   N   C PD+V Y TLLKG
Sbjct: 842 YNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFEGTN---CEPDQVMYSTLLKG 883

Query: 470 LSQGGRLSDALAL 476
           L    R  DALAL
Sbjct: 902 LCDFKRPLDALAL 883

[Close]

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-33
Identity = 112/424 (26.42%), Postives = 186/424 (43.87%), Query Frame = 1


Query: 65  YSLVERLIRRGLFLPAQQVIQRIVT---QSSSISEAISIVDFAAERGLEIDLDTHGVFCR 124
           YS    ++ RG+ LP       I+    ++ ++ +A+ +++   + G+  D  T+     
Sbjct: 216 YSTYHEMLDRGI-LPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 275

Query: 125 QLVYSRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKK 184
               S      + + KK    G EPD      +  +L +                     
Sbjct: 276 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK-------------------NG 335

Query: 185 RIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYT 244
           R  E + +F  M K G+ P+   Y T++ GY   G L+E   L + MV N I P  ++++
Sbjct: 336 RCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFS 395

Query: 245 ALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERS 304
            LI    K+   D+  L   KM + G +PNAV Y ++I    K G VE A    + M   
Sbjct: 396 ILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDE 455

Query: 305 HIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHE-TTLVPRDNNMIV 364
            + P  I Y +L+ G+C        KW       ++A+  +  ML     L     N I+
Sbjct: 456 GLSPGNIVYNSLIHGLC-----TCNKW-------ERAEELILEMLDRGICLNTIFFNSII 515

Query: 365 SANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLH 424
            ++  E     + KL + +  + + PN+  YN++I GYC   +M +A   L  M   GL 
Sbjct: 516 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 575

Query: 425 PNQVTFTILMDG-----DVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 480
           PN VT++ L++G      +  A+ LF +M   G  PD + Y  +L+GL Q  R + A  L
Sbjct: 576 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 607

[Close]

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot
Match: PP445_ARATH (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-29
Identity = 93/316 (29.43%), Postives = 149/316 (47.15%), Query Frame = 1


Query: 167 EMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFE 226
           E+ +  L     + +RI E   +F KM      P    Y  +I     + +  EA  L +
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 227 QMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIG 286
           +M E  I P+ H YT LI  L  +   +K    LG+ML  G  PN + Y +LIN Y K G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 287 EVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRML 346
            +E A  +V+LME   + P+   Y  L+ G CK+ +              KA   L +ML
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-------------HKAMGVLNKML 467

Query: 347 HETTL--VPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRM 406
               L  V   N++I     +    S A +L+  + D  +VP+   Y S+I   C++ R+
Sbjct: 468 ERKVLPDVVTYNSLIDGQCRSGNFDS-AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 527

Query: 407 LDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITL 466
            +A    + ++++G++PN V +T L+D     G V+ A  +  KM    C+P+ + +  L
Sbjct: 528 EEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 587

Query: 467 LKGLSQGGRLSDALAL 476
           + GL   G+L +A  L
Sbjct: 588 IHGLCADGKLKEATLL 589

[Close]

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-29
Identity = 87/288 (30.21%), Postives = 139/288 (48.26%), Query Frame = 1


Query: 182 RIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYT 241
           R  +   V K+M + G+ PD   Y ++I G  K  ++ EAR    +MVEN + P++  Y 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 242 ALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERS 301
           A ISG ++ +       Y+ +M   G  PN VL T LIN Y K G+V  A      M   
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ 586

Query: 302 HIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVS 361
            I  D   Y  L++G+ KN  VD  +              +FR +    + P   +  V 
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAE-------------EIFREMRGKGIAPDVFSYGVL 646

Query: 362 ANSTEEMKSF--ALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGL 421
            N   ++ +   A  +  ++ +  + PN+ +YN ++ G+CR+  +  A   L+ M  +GL
Sbjct: 647 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 706

Query: 422 HPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKG 463
           HPN VT+  ++D     GD+  A  LF++M + G +PD   Y TL+ G
Sbjct: 707 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

[Close]

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot
Match: PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-28
Identity = 86/300 (28.67%), Postives = 149/300 (49.67%), Query Frame = 1


Query: 183 IFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTA 242
           I + + VF ++ K  + P    + T+INGY K G L E  +L  QM ++   P    Y+A
Sbjct: 256 ISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA 315

Query: 243 LISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSH 302
           LI+ L K+N  D       +M + G  PN V++T+LI+ + + GE++        M    
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375

Query: 303 IEPDVIFYITLVSGICKN--LIVDKKKWFLLEKENQKAKSTLFRMLHETTLVP---RDNN 362
           ++PD++ Y TLV+G CKN  L+  +     + +   +     +     TTL+    R  +
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITY-----TTLIDGFCRGGD 435

Query: 363 MIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKE 422
           +  +    +EM    ++L  +V           +++++CG C+  R++DA   L  M + 
Sbjct: 436 VETALEIRKEMDQNGIEL-DRVG----------FSALVCGMCKEGRVIDAERALREMLRA 495

Query: 423 GLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDA 473
           G+ P+ VT+T++MD     GD  +   L  +M  DG +P  V Y  LL GL + G++ +A
Sbjct: 496 GIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539

[Close]

BLAST of Cp4.1LG14g05680 vs. TrEMBL
Match: A0A061G037_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_014940 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.0e-98
Identity = 194/395 (49.11%), Postives = 268/395 (67.85%), Query Frame = 1


Query: 86  RIVTQSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAE 145
           + ++Q     +A S+VD   +RG+  D  T+ +               + ++    G   
Sbjct: 518 KCLSQEGLFEDAKSLVDLMQDRGIFPDQATYLI---------------MVNEHCKHGDLA 577

Query: 146 PDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLY 205
               +LD M    ++  + I +    SL      +KR+FE + +F +ML++G DPD+ +Y
Sbjct: 578 SAFDILDQMEDRGMKPGVAIYDCIIGSL----CRQKRLFEAEDMFIRMLESGEDPDEIVY 637

Query: 206 LTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLR 265
           +TMINGY KNG+L+EAR+LFE+M+E++I P+SH YTALISGLVKK+MTDKGC+YL +ML 
Sbjct: 638 MTMINGYAKNGRLIEARQLFEKMIEDAIRPTSHSYTALISGLVKKDMTDKGCMYLDRMLG 697

Query: 266 DGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDK 325
           DG  PN VLYTSLIN++L+ GE E+AFRLVDLM+R+ IE D+I YI LVSG+C+N I  +
Sbjct: 698 DGLVPNVVLYTSLINNFLRKGEFEFAFRLVDLMDRNQIEHDLITYIALVSGVCRN-ITSR 757

Query: 326 KKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIV 385
           K+W  +++ +++A+  LFR+LH   L+PR+  + VS +S E MK FALKL+QKVK+   +
Sbjct: 758 KRWCSIKRSSERAREMLFRLLHYRCLLPREKKLRVSDSSPEAMKCFALKLMQKVKETRFM 817

Query: 386 PNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGL 445
           PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVT TILM      G+++ AI L
Sbjct: 818 PNLYLYNGIISGFCWADRMQDAYDHFELMQKEGVRPNQVTLTILMGGHIKAGEIDHAIDL 877

Query: 446 FNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           FNKMN D C PDK+AY TL+KGL Q GRL +AL+L
Sbjct: 878 FNKMNADDCTPDKIAYNTLIKGLCQAGRLLEALSL 892

[Close]

BLAST of Cp4.1LG14g05680 vs. TrEMBL
Match: A0A0B0MFC3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22354 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 196/415 (47.23%), Postives = 270/415 (65.06%), Query Frame = 1


Query: 66  SLVERLIRRGLFLPAQQVIQRIVTQSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVY 125
           SL++ L ++GLF  A+ ++ R+  Q                          G+F  Q   
Sbjct: 516 SLIKCLSQKGLFEDAESLLNRMQAQ--------------------------GIFPDQAT- 575

Query: 126 SRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFE 185
                  ++ ++    G   P   +LD M    ++  + I +   RSL+     KK++ E
Sbjct: 576 -----CLIIINEHCKHGNLAPAFDILDQMEDRGMKPGVAIYDCIIRSLF----RKKKVSE 635

Query: 186 VKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALIS 245
            K +F +MLK+GVDPD+ +YLTMING+  NG+++EAR+LF +M+E +I P+SH YTALIS
Sbjct: 636 AKDMFVRMLKSGVDPDEIIYLTMINGFSNNGRVIEARRLFHEMIEAAIRPTSHSYTALIS 695

Query: 246 GLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEP 305
           GLVKK+MTDKGC+YL KML DG  PNAVLYTSLIN++L+ GE E+AFRLVDLM+R+ IE 
Sbjct: 696 GLVKKDMTDKGCMYLEKMLDDGLVPNAVLYTSLINNFLQKGEFEFAFRLVDLMDRNQIEL 755

Query: 306 DVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANST 365
           D+I YI+LVS   ++ I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S 
Sbjct: 756 DLISYISLVSRFYRS-ISSRKRWFAMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSP 815

Query: 366 EEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVT 425
           E MK FALKLIQKVK    +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVT
Sbjct: 816 EAMKCFALKLIQKVKQTRFMPNLYLYNVIISGFCEADRMQDAYDHFELMQKEGVLPNQVT 875

Query: 426 FTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           FTILM      G+++ AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 876 FTILMGGHIKAGEIDHAIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

[Close]

BLAST of Cp4.1LG14g05680 vs. TrEMBL
Match: A0A0D2QJ46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G114200 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.0e-92
Identity = 180/339 (53.10%), Postives = 242/339 (71.39%), Query Frame = 1


Query: 142 GGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPD 201
           G  EP   +LD M    ++  + I +    SL+     +K++ E   +F +ML++GVDPD
Sbjct: 560 GNLEPAFDILDQMEDRGMKPGVAIYDCIIGSLF----RQKKVSEATAMFIRMLESGVDPD 619

Query: 202 KHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLG 261
           + +YLTMING+  NG+++EA +LF +M+  +I P+SH YTALISGLVKKNMTDKGC YL 
Sbjct: 620 EIIYLTMINGFSNNGRVIEADQLFHEMIGAAIRPTSHSYTALISGLVKKNMTDKGCTYLE 679

Query: 262 KMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNL 321
           KML DG  PNAVLYTSLI+++L+  E E+AFRLVDLM+R+ IE D+IFYI+LVSG  ++ 
Sbjct: 680 KMLDDGLVPNAVLYTSLISNFLQKREFEFAFRLVDLMDRNQIERDLIFYISLVSGFYRS- 739

Query: 322 IVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKD 381
           I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S E MK FALKLIQKVK 
Sbjct: 740 ISSRKRWFSMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSPEAMKCFALKLIQKVKQ 799

Query: 382 VCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNS 441
              +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVTFTILM      G+++ 
Sbjct: 800 TRFMPNLYLYNGIISGFCEADRMQDAYDHFELMQKEGVLPNQVTFTILMGGHIKAGEIDH 859

Query: 442 AIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 860 AIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

[Close]

BLAST of Cp4.1LG14g05680 vs. TrEMBL
Match: F6HAK9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01780 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 187/460 (40.65%), Postives = 276/460 (60.00%), Query Frame = 1


Query: 90  QSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAEPDAS 149
           Q   + +A S++D   E G+  DL T+ +   +        +      +    G +P  +
Sbjct: 526 QERLVEDAKSLIDLMQENGIVPDLATYLIMVHEHCNHGDLASAFGLLDQMNERGLKPSVA 585

Query: 150 VLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMI 209
           + DS+   L                   + +KRI E + VFK ML+AGVDPD  +Y+TMI
Sbjct: 586 IYDSIIGCL-------------------SRRKRILEAENVFKMMLEAGVDPDAIIYVTMI 645

Query: 210 NGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFS 269
           +GY KN + +EAR+LF++M+E+   PSSH YTA+ISGLVK+NM DKGC YL  ML+DGF 
Sbjct: 646 SGYSKNRRAIEARQLFDKMIEHGFQPSSHSYTAVISGLVKENMIDKGCSYLSDMLKDGFV 705

Query: 270 PNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWF 329
           PN VLYTSLIN +L+ GE+E+AFRLVDLM+R+ IE D+I  I LVSG+ +N+   +++W+
Sbjct: 706 PNTVLYTSLINQFLRKGELEFAFRLVDLMDRNQIECDMITCIALVSGVSRNITPVRRRWY 765

Query: 330 LLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLH 389
            ++  + + +  L  +LH++ ++PR+NN+     S  ++K FAL L+QK+K    +PNL+
Sbjct: 766 HVKSGSARVREILLHLLHQSFVIPRENNLSFPRGSPRKIKYFALNLMQKIKGSSFMPNLY 825

Query: 390 LYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKM 449
           LYN II G+CR + + DA +  ELMQ EG+ PNQVTFTIL++     G+++ AIGLFNKM
Sbjct: 826 LYNGIISGFCRANMIQDAYNHFELMQTEGVCPNQVTFTILINGHTRFGEIDHAIGLFNKM 885

Query: 450 NVDGCIPDKVAYITLLKGLSQGGRLSDALALHMFICSRLTLARSLSATLSHGNLGICNRK 509
           N DG  PD + Y  L+KGL + GRL DAL              S+S T+           
Sbjct: 886 NADGLAPDGITYNALIKGLCKAGRLLDAL--------------SVSHTM----------- 941

Query: 510 NVENLFSKRSEWDLCLATITALQM-KFLTVKGDTSIELLV 544
           +   LF  +S ++  L  + A  + K+L VK DT++  ++
Sbjct: 946 HKRGLFPNKSSYEKLLKCLCASHLGKYLGVKLDTNLPYIL 941

[Close]

BLAST of Cp4.1LG14g05680 vs. TrEMBL
Match: A0A059CBT8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D00222 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 171/389 (43.96%), Postives = 255/389 (65.55%), Query Frame = 1


Query: 96  EAISIVDFAAERGLEIDLDTHGV----FCRQLVYSRPQLAELLYDKKFTFGGAEPDASVL 155
           EA S+ D   +RG+  DL+T+ +    +C+Q                   G  +    V+
Sbjct: 500 EAESLHDLIQDRGIVPDLETYLIMINGYCKQ-------------------GNLQSAYRVM 559

Query: 156 DSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMING 215
           D +S+  ++  + + +    SL    +  KRI E + +FK+ML+ G+DPD+ +Y+TMIN 
Sbjct: 560 DQISERGLKPNVAMYDCIIGSL----SSIKRISEAEDLFKRMLEDGMDPDETIYMTMINA 619

Query: 216 YGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPN 275
           Y ++G+LLEA +LF++M++N I P+S+ YTALI+GLVK++MT+KGC+YL KM+ DG+ PN
Sbjct: 620 YARSGRLLEASELFDKMIDNFIKPTSYSYTALINGLVKRDMTEKGCIYLDKMIGDGYEPN 679

Query: 276 AVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLL 335
            VLYTSLI HYL+ GE ++AF LVDLM ++ I+ D++ YI ++ G+C+++   K KW + 
Sbjct: 680 NVLYTSLIGHYLRGGEFKFAFMLVDLMYKNQIKCDLVTYIVVLRGVCRHISGIKHKWGIT 739

Query: 336 EKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLY 395
            + + KA+  LF +L   +L   D N+ V  N  E MK FAL L +K+KD   +PNL LY
Sbjct: 740 SRASYKARKMLFDLLQSRSLATIDRNLKVPVNLPEAMKHFALNLFKKIKDSEFMPNLFLY 799

Query: 396 NSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKMNV 455
           N +I G+CR + + DA H +ELMQ+EGL PNQVT+TIL+      G+++SA+GLFNKMN 
Sbjct: 800 NGLISGFCRANMIEDAYHHVELMQREGLQPNQVTYTILIGEHINRGEIDSAVGLFNKMNA 859

Query: 456 DGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           DGC+PD +AY  L++GL   GRL D L+L
Sbjct: 860 DGCLPDGLAYNRLVRGLCSCGRLLDGLSL 865

[Close]

BLAST of Cp4.1LG14g05680 vs. TAIR10
Match: AT5G62370.1 (AT5G62370.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 245.0 bits (624), Expect = 1.2e-64
Identity = 161/433 (37.18%), Postives = 243/433 (56.12%), Query Frame = 1


Query: 50  VTSSSSSASEHKTLCYSLVERLIRRGLF-LP-AQQVIQRIVTQSSSISEAISIVDFAAER 109
           V +++  +  +     S +E+++  G   LP +   + + + Q + I +  S+V+   E 
Sbjct: 482 VVTTALCSQRNYIAALSRIEKMVNLGCTPLPFSYNSVIKCLFQENIIEDLASLVNIIQEL 541

Query: 110 GLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIRE 169
               D+DT+ +   +L            D+   F       +++D+M +  +   + I  
Sbjct: 542 DFVPDVDTYLIVVNELCKKN--------DRDAAF-------AIIDAMEELGLRPTVAI-- 601

Query: 170 MEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQ 229
             + S+      + R+ E +  F KML++G+ PD+  Y+ MIN Y +NG++ EA +L E+
Sbjct: 602 --YSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEE 661

Query: 230 MVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGE 289
           +V++ + PSS  YT LISG VK  M +KGC YL KML DG SPN VLYT+LI H+LK G+
Sbjct: 662 VVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGD 721

Query: 290 VEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLH 349
            +++F L  LM  + I+ D I YITL+SG+ + +   KK+  ++E   +K    L R++ 
Sbjct: 722 FKFSFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVIVEPGKEKL---LQRLIR 781

Query: 350 ETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDA 409
              LV      I S+      KSFA+++I KVK   I+PNL+L+N+II GYC   R+ +A
Sbjct: 782 TKPLVS-----IPSSLGNYGSKSFAMEVIGKVKK-SIIPNLYLHNTIITGYCAAGRLDEA 841

Query: 410 NHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKG 469
            + LE MQKEG+ PN VT+TILM      GD+ SAI LF   N   C PD+V Y TLLKG
Sbjct: 842 YNHLESMQKEGIVPNLVTYTILMKSHIEAGDIESAIDLFEGTN---CEPDQVMYSTLLKG 883

Query: 470 LSQGGRLSDALAL 476
           L    R  DALAL
Sbjct: 902 LCDFKRPLDALAL 883

[Close]

BLAST of Cp4.1LG14g05680 vs. TAIR10
Match: AT5G65560.1 (AT5G65560.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-30
Identity = 93/316 (29.43%), Postives = 149/316 (47.15%), Query Frame = 1


Query: 167 EMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFE 226
           E+ +  L     + +RI E   +F KM      P    Y  +I     + +  EA  L +
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 227 QMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIG 286
           +M E  I P+ H YT LI  L  +   +K    LG+ML  G  PN + Y +LIN Y K G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 287 EVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRML 346
            +E A  +V+LME   + P+   Y  L+ G CK+ +              KA   L +ML
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-------------HKAMGVLNKML 467

Query: 347 HETTL--VPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRM 406
               L  V   N++I     +    S A +L+  + D  +VP+   Y S+I   C++ R+
Sbjct: 468 ERKVLPDVVTYNSLIDGQCRSGNFDS-AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 527

Query: 407 LDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITL 466
            +A    + ++++G++PN V +T L+D     G V+ A  +  KM    C+P+ + +  L
Sbjct: 528 EEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 587

Query: 467 LKGLSQGGRLSDALAL 476
           + GL   G+L +A  L
Sbjct: 588 IHGLCADGKLKEATLL 589

[Close]

BLAST of Cp4.1LG14g05680 vs. TAIR10
Match: AT5G61990.1 (AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-30
Identity = 87/288 (30.21%), Postives = 139/288 (48.26%), Query Frame = 1


Query: 182 RIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYT 241
           R  +   V K+M + G+ PD   Y ++I G  K  ++ EAR    +MVEN + P++  Y 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 242 ALISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERS 301
           A ISG ++ +       Y+ +M   G  PN VL T LIN Y K G+V  A      M   
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ 586

Query: 302 HIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVS 361
            I  D   Y  L++G+ KN  VD  +              +FR +    + P   +  V 
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAE-------------EIFREMRGKGIAPDVFSYGVL 646

Query: 362 ANSTEEMKSF--ALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGL 421
            N   ++ +   A  +  ++ +  + PN+ +YN ++ G+CR+  +  A   L+ M  +GL
Sbjct: 647 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGL 706

Query: 422 HPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKG 463
           HPN VT+  ++D     GD+  A  LF++M + G +PD   Y TL+ G
Sbjct: 707 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

[Close]

BLAST of Cp4.1LG14g05680 vs. TAIR10
Match: AT1G09680.1 (AT1G09680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-30
Identity = 86/300 (28.67%), Postives = 149/300 (49.67%), Query Frame = 1


Query: 183 IFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTA 242
           I + + VF ++ K  + P    + T+INGY K G L E  +L  QM ++   P    Y+A
Sbjct: 256 ISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA 315

Query: 243 LISGLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSH 302
           LI+ L K+N  D       +M + G  PN V++T+LI+ + + GE++        M    
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375

Query: 303 IEPDVIFYITLVSGICKN--LIVDKKKWFLLEKENQKAKSTLFRMLHETTLVP---RDNN 362
           ++PD++ Y TLV+G CKN  L+  +     + +   +     +     TTL+    R  +
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITY-----TTLIDGFCRGGD 435

Query: 363 MIVSANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKE 422
           +  +    +EM    ++L  +V           +++++CG C+  R++DA   L  M + 
Sbjct: 436 VETALEIRKEMDQNGIEL-DRVG----------FSALVCGMCKEGRVIDAERALREMLRA 495

Query: 423 GLHPNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDA 473
           G+ P+ VT+T++MD     GD  +   L  +M  DG +P  V Y  LL GL + G++ +A
Sbjct: 496 GIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539

[Close]

BLAST of Cp4.1LG14g05680 vs. TAIR10
Match: AT1G05670.1 (AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-30
Identity = 91/307 (29.64%), Postives = 150/307 (48.86%), Query Frame = 1


Query: 182 RIFEVKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYT 241
           ++ E +  F +M++ G+ PD  +Y T+I+G+ K G +  A K F +M    I P    YT
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 242 ALISGLVK-KNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMER 301
           A+ISG  +  +M + G L+  +M   G  P++V +T LIN Y K G ++ AFR+ + M +
Sbjct: 391 AIISGFCQIGDMVEAGKLF-HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 450

Query: 302 SHIEPDVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIV 361
           +   P+V+ Y TL+ G+CK   +D     L E      +  +F      T     N +  
Sbjct: 451 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF------TYNSIVNGLCK 510

Query: 362 SANSTEEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLH 421
           S N  E     A+KL+ + +   +  +   Y +++  YC++  M  A   L+ M  +GL 
Sbjct: 511 SGNIEE-----AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 570

Query: 422 PNQVTFTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 481
           P  VTF +LM+     G +     L N M   G  P+   + +L+K       L  A A+
Sbjct: 571 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAI 625

Query: 482 HMFICSR 483
           +  +CSR
Sbjct: 631 YKDMCSR 625

[Close]

BLAST of Cp4.1LG14g05680 vs. NCBI nr
Match: gi|590671717|ref|XP_007038409.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97
Identity = 194/395 (49.11%), Postives = 268/395 (67.85%), Query Frame = 1


Query: 86  RIVTQSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVYSRPQLAELLYDKKFTFGGAE 145
           + ++Q     +A S+VD   +RG+  D  T+ +               + ++    G   
Sbjct: 518 KCLSQEGLFEDAKSLVDLMQDRGIFPDQATYLI---------------MVNEHCKHGDLA 577

Query: 146 PDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPDKHLY 205
               +LD M    ++  + I +    SL      +KR+FE + +F +ML++G DPD+ +Y
Sbjct: 578 SAFDILDQMEDRGMKPGVAIYDCIIGSL----CRQKRLFEAEDMFIRMLESGEDPDEIVY 637

Query: 206 LTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLGKMLR 265
           +TMINGY KNG+L+EAR+LFE+M+E++I P+SH YTALISGLVKK+MTDKGC+YL +ML 
Sbjct: 638 MTMINGYAKNGRLIEARQLFEKMIEDAIRPTSHSYTALISGLVKKDMTDKGCMYLDRMLG 697

Query: 266 DGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNLIVDK 325
           DG  PN VLYTSLIN++L+ GE E+AFRLVDLM+R+ IE D+I YI LVSG+C+N I  +
Sbjct: 698 DGLVPNVVLYTSLINNFLRKGEFEFAFRLVDLMDRNQIEHDLITYIALVSGVCRN-ITSR 757

Query: 326 KKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKDVCIV 385
           K+W  +++ +++A+  LFR+LH   L+PR+  + VS +S E MK FALKL+QKVK+   +
Sbjct: 758 KRWCSIKRSSERAREMLFRLLHYRCLLPREKKLRVSDSSPEAMKCFALKLMQKVKETRFM 817

Query: 386 PNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNSAIGL 445
           PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVT TILM      G+++ AI L
Sbjct: 818 PNLYLYNGIISGFCWADRMQDAYDHFELMQKEGVRPNQVTLTILMGGHIKAGEIDHAIDL 877

Query: 446 FNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           FNKMN D C PDK+AY TL+KGL Q GRL +AL+L
Sbjct: 878 FNKMNADDCTPDKIAYNTLIKGLCQAGRLLEALSL 892

[Close]

BLAST of Cp4.1LG14g05680 vs. NCBI nr
Match: gi|728812395|gb|KHG00793.1| (hypothetical protein F383_22354 [Gossypium arboreum])

HSP 1 Score: 357.5 bits (916), Expect = 4.7e-95
Identity = 196/415 (47.23%), Postives = 270/415 (65.06%), Query Frame = 1


Query: 66  SLVERLIRRGLFLPAQQVIQRIVTQSSSISEAISIVDFAAERGLEIDLDTHGVFCRQLVY 125
           SL++ L ++GLF  A+ ++ R+  Q                          G+F  Q   
Sbjct: 516 SLIKCLSQKGLFEDAESLLNRMQAQ--------------------------GIFPDQAT- 575

Query: 126 SRPQLAELLYDKKFTFGGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFE 185
                  ++ ++    G   P   +LD M    ++  + I +   RSL+     KK++ E
Sbjct: 576 -----CLIIINEHCKHGNLAPAFDILDQMEDRGMKPGVAIYDCIIRSLF----RKKKVSE 635

Query: 186 VKGVFKKMLKAGVDPDKHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALIS 245
            K +F +MLK+GVDPD+ +YLTMING+  NG+++EAR+LF +M+E +I P+SH YTALIS
Sbjct: 636 AKDMFVRMLKSGVDPDEIIYLTMINGFSNNGRVIEARRLFHEMIEAAIRPTSHSYTALIS 695

Query: 246 GLVKKNMTDKGCLYLGKMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEP 305
           GLVKK+MTDKGC+YL KML DG  PNAVLYTSLIN++L+ GE E+AFRLVDLM+R+ IE 
Sbjct: 696 GLVKKDMTDKGCMYLEKMLDDGLVPNAVLYTSLINNFLQKGEFEFAFRLVDLMDRNQIEL 755

Query: 306 DVIFYITLVSGICKNLIVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANST 365
           D+I YI+LVS   ++ I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S 
Sbjct: 756 DLISYISLVSRFYRS-ISSRKRWFAMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSP 815

Query: 366 EEMKSFALKLIQKVKDVCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVT 425
           E MK FALKLIQKVK    +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVT
Sbjct: 816 EAMKCFALKLIQKVKQTRFMPNLYLYNVIISGFCEADRMQDAYDHFELMQKEGVLPNQVT 875

Query: 426 FTILMD-----GDVNSAIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           FTILM      G+++ AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 876 FTILMGGHIKAGEIDHAIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

[Close]

BLAST of Cp4.1LG14g05680 vs. NCBI nr
Match: gi|823142447|ref|XP_012471024.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X2 [Gossypium raimondii])

HSP 1 Score: 348.2 bits (892), Expect = 2.8e-92
Identity = 180/339 (53.10%), Postives = 242/339 (71.39%), Query Frame = 1


Query: 142 GGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPD 201
           G  EP   +LD M    ++  + I +    SL+     +K++ E   +F +ML++GVDPD
Sbjct: 560 GNLEPAFDILDQMEDRGMKPGVAIYDCIIGSLF----RQKKVSEATAMFIRMLESGVDPD 619

Query: 202 KHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLG 261
           + +YLTMING+  NG+++EA +LF +M+  +I P+SH YTALISGLVKKNMTDKGC YL 
Sbjct: 620 EIIYLTMINGFSNNGRVIEADQLFHEMIGAAIRPTSHSYTALISGLVKKNMTDKGCTYLE 679

Query: 262 KMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNL 321
           KML DG  PNAVLYTSLI+++L+  E E+AFRLVDLM+R+ IE D+IFYI+LVSG  ++ 
Sbjct: 680 KMLDDGLVPNAVLYTSLISNFLQKREFEFAFRLVDLMDRNQIERDLIFYISLVSGFYRS- 739

Query: 322 IVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKD 381
           I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S E MK FALKLIQKVK 
Sbjct: 740 ISSRKRWFSMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSPEAMKCFALKLIQKVKQ 799

Query: 382 VCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNS 441
              +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVTFTILM      G+++ 
Sbjct: 800 TRFMPNLYLYNGIISGFCEADRMQDAYDHFELMQKEGVLPNQVTFTILMGGHIKAGEIDH 859

Query: 442 AIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 860 AIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

[Close]

BLAST of Cp4.1LG14g05680 vs. NCBI nr
Match: gi|823142455|ref|XP_012471028.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X3 [Gossypium raimondii])

HSP 1 Score: 348.2 bits (892), Expect = 2.8e-92
Identity = 180/339 (53.10%), Postives = 242/339 (71.39%), Query Frame = 1


Query: 142 GGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPD 201
           G  EP   +LD M    ++  + I +    SL+     +K++ E   +F +ML++GVDPD
Sbjct: 560 GNLEPAFDILDQMEDRGMKPGVAIYDCIIGSLF----RQKKVSEATAMFIRMLESGVDPD 619

Query: 202 KHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLG 261
           + +YLTMING+  NG+++EA +LF +M+  +I P+SH YTALISGLVKKNMTDKGC YL 
Sbjct: 620 EIIYLTMINGFSNNGRVIEADQLFHEMIGAAIRPTSHSYTALISGLVKKNMTDKGCTYLE 679

Query: 262 KMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNL 321
           KML DG  PNAVLYTSLI+++L+  E E+AFRLVDLM+R+ IE D+IFYI+LVSG  ++ 
Sbjct: 680 KMLDDGLVPNAVLYTSLISNFLQKREFEFAFRLVDLMDRNQIERDLIFYISLVSGFYRS- 739

Query: 322 IVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKD 381
           I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S E MK FALKLIQKVK 
Sbjct: 740 ISSRKRWFSMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSPEAMKCFALKLIQKVKQ 799

Query: 382 VCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNS 441
              +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVTFTILM      G+++ 
Sbjct: 800 TRFMPNLYLYNGIISGFCEADRMQDAYDHFELMQKEGVLPNQVTFTILMGGHIKAGEIDH 859

Query: 442 AIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 860 AIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

[Close]

BLAST of Cp4.1LG14g05680 vs. NCBI nr
Match: gi|823142445|ref|XP_012471023.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X1 [Gossypium raimondii])

HSP 1 Score: 348.2 bits (892), Expect = 2.8e-92
Identity = 180/339 (53.10%), Postives = 242/339 (71.39%), Query Frame = 1


Query: 142 GGAEPDASVLDSMSKWLVEAELLIREMEFRSLYPDKTMKKRIFEVKGVFKKMLKAGVDPD 201
           G  EP   +LD M    ++  + I +    SL+     +K++ E   +F +ML++GVDPD
Sbjct: 560 GNLEPAFDILDQMEDRGMKPGVAIYDCIIGSLF----RQKKVSEATAMFIRMLESGVDPD 619

Query: 202 KHLYLTMINGYGKNGKLLEARKLFEQMVENSIPPSSHIYTALISGLVKKNMTDKGCLYLG 261
           + +YLTMING+  NG+++EA +LF +M+  +I P+SH YTALISGLVKKNMTDKGC YL 
Sbjct: 620 EIIYLTMINGFSNNGRVIEADQLFHEMIGAAIRPTSHSYTALISGLVKKNMTDKGCTYLE 679

Query: 262 KMLRDGFSPNAVLYTSLINHYLKIGEVEYAFRLVDLMERSHIEPDVIFYITLVSGICKNL 321
           KML DG  PNAVLYTSLI+++L+  E E+AFRLVDLM+R+ IE D+IFYI+LVSG  ++ 
Sbjct: 680 KMLDDGLVPNAVLYTSLISNFLQKREFEFAFRLVDLMDRNQIERDLIFYISLVSGFYRS- 739

Query: 322 IVDKKKWFLLEKENQKAKSTLFRMLHETTLVPRDNNMIVSANSTEEMKSFALKLIQKVKD 381
           I  +K+WF + + +++A+  LF++LH  +L+P++ N+ VS +S E MK FALKLIQKVK 
Sbjct: 740 ISSRKRWFSMRRGSERAREKLFQLLHRQSLLPKEKNLRVSDSSPEAMKCFALKLIQKVKQ 799

Query: 382 VCIVPNLHLYNSIICGYCRTDRMLDANHQLELMQKEGLHPNQVTFTILMD-----GDVNS 441
              +PNL+LYN II G+C  DRM DA    ELMQKEG+ PNQVTFTILM      G+++ 
Sbjct: 800 TRFMPNLYLYNGIISGFCEADRMQDAYDHFELMQKEGVLPNQVTFTILMGGHIKAGEIDH 859

Query: 442 AIGLFNKMNVDGCIPDKVAYITLLKGLSQGGRLSDALAL 476
           AIGLFNKMN DGC PD + Y  L+ GL Q  RL +AL+L
Sbjct: 860 AIGLFNKMNADGCTPDGIVYKILVNGLCQASRLLEALSL 893

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP443_ARATH	2.1e-63	37.18	Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN...	[more]
RF1_ORYSI	1.8e-33	26.42	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1	[more]
PP445_ARATH	2.0e-29	29.43	Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN...	[more]
PP442_ARATH	4.5e-29	30.21	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
PPR26_ARATH	1.3e-28	28.67	Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis th...	[more]

BLAST of Cp4.1LG14g05680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G037_THECC	7.0e-98	49.11	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobro...	[more]
A0A0B0MFC3_GOSAR	3.3e-95	47.23	Uncharacterized protein OS=Gossypium arboreum GN=F383_22354 PE=4 SV=1	[more]
A0A0D2QJ46_GOSRA	2.0e-92	53.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G114200 PE=4 SV=1	[more]
F6HAK9_VITVI	1.6e-89	40.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01780 PE=4 SV=...	[more]
A0A059CBT8_EUCGR	3.6e-86	43.96	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D00222 PE=4 ...	[more]

BLAST of Cp4.1LG14g05680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62370.1	1.2e-64	37.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G65560.1	1.1e-30	29.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G61990.1	2.5e-30	30.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09680.1	7.3e-30	28.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	9.6e-30	29.64	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Cp4.1LG14g05680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590671717\|ref\|XP_007038409.1\|	1.0e-97	49.11	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma...	[more]
gi\|728812395\|gb\|KHG00793.1\|	4.7e-95	47.23	hypothetical protein F383_22354 [Gossypium arboreum]	[more]
gi\|823142447\|ref\|XP_012471024.1\|	2.8e-92	53.10	PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X2 [Gos...	[more]
gi\|823142455\|ref\|XP_012471028.1\|	2.8e-92	53.10	PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X3 [Gos...	[more]
gi\|823142445\|ref\|XP_012471023.1\|	2.8e-92	53.10	PREDICTED: pentatricopeptide repeat-containing protein At5g62370 isoform X1 [Gos...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007029	endoplasmic reticulum organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005789	endoplasmic reticulum membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05680.1	Cp4.1LG14g05680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 200..249 score: 6.3E-12coord: 270..319 score: 2.9E-10coord: 386..432 score: 2.4
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 239..272 score: 3.6E-7coord: 390..422 score: 3.0E-5coord: 273..307 score: 1.3E-6coord: 204..236 score: 7.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 166..200 score: 5.349coord: 201..235 score: 12.562coord: 387..421 score: 10.709coord: 452..482 score: 7.267coord: 306..340 score: 5.272coord: 271..305 score: 10.819coord: 236..270 score: 9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 66..90 score: 9.5E-92coord: 143..320 score: 9.5E-92coord: 367..475 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g05680	CmaCh16G001870	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g05680	CmoCh16G001990	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g05680	MELO3C006816	Melon (DHL92) v3.5.1	cpemeB190
Cp4.1LG14g05680	CSPI03G15970	Wild cucumber (PI 183967)	cpecpiB217
Cp4.1LG14g05680	MELO3C006816.2	Melon (DHL92) v3.6.1	cpemedB233
Cp4.1LG14g05680	CsaV3_3G016180	Cucumber (Chinese Long) v3	cpecucB0257
Cp4.1LG14g05680	Bhi01G000897	Wax gourd	cpewgoB0298
Cp4.1LG14g05680	CsGy3G016040	Cucumber (Gy14) v2	cgybcpeB327

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g05680	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG14g05680	Cucurbita pepo (Zucchini)	cpecpeB245
Cp4.1LG14g05680	Cucumber (Gy14) v1	cgycpeB0673
Cp4.1LG14g05680	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g05680	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g05680	Cucumber (Chinese Long) v2	cpecuB214
Cp4.1LG14g05680	Bottle gourd (USVL1VR-Ls)	cpelsiB172
Cp4.1LG14g05680	Watermelon (Charleston Gray)	cpewcgB207
Cp4.1LG14g05680	Watermelon (97103) v1	cpewmB227
Cp4.1LG14g05680	Silver-seed gourd	carcpeB0523
Cp4.1LG14g05680	Silver-seed gourd	carcpeB0998
Cp4.1LG14g05680	Silver-seed gourd	carcpeB1215