Cp4.1LG14g00180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g00180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptioncytochrome c biogenesis protein family
LocationCp4.1LG14 : 4602691 .. 4607340 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCACTCTCTCGCTTTGCTTATTTTTCTTCTTCTTTGAGTTTGTGAGCGGAAGAAAGCTTTGGCAACTGCCACCCACAACAGCCCGCCCCCACATCCACAGGGTCCACTTCCTTCAACCCTTCTGAGCATCCGACTATCGATTAACTCCGCTCCAAATTCCGGAGTTCTTCCCCAATTTTTCAAATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAATACCTCTAATTTGGTTGCCGTTGTCGGTTGAAATGATTCCCTTCTCTGTCTGTATACCTATGGGAGTGGCGAATACTTTTGAACTGTGGGGGATGTTTTGATCACCATGTATATTCAACTTTCTAATAGAGGCTCACTGGTTTCTTTAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGGTAATCCTAATAACTTATCCAAGTCTTGTGTGGATATGGATTATTCTGTTTTGATTATAGTTTGTTCATTACATAACTATGATTGGCAATTTCATAAGTAAATGAATGGATGATTCTTAAGCAATCTGAGGTTTCAACTCTGCTGGGTTTACTATGCATATTCTTAATTTTATTTCAATTTCTATGTTTCCAGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGTTTAGAGCATATGTGGGTAAGAGTTTATAGTCTTCGCATATTGTGTTTTCCAAAGCGTGTGAGATCCCACATCGGTTGGGGAGGAGCACGAAACACCCTTTATAAGGGTGTAGAAATCTCTCCTTAGCAGATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGGCCAAAGAGGATAATATCTGCCAGCGGTGAACCTGAGCCGTTACAAAGATCTCAATTTCTATATTCTTTTGAGGCTTAATTCCCTAAAATCCATTCATTTAATTATTTTTAAAGATGTTGATTAATATTTTCAGCAATTCCTTTAGAATCTTGATGAAATCTATGTGTATTTCTATTTTCCCTTGGTCATATAAGAATGGTTACTTCATTATGACTGCAAAAGAAACTGAAGCTTGGTAACAGGGCTGCTCTTTAGCATTACTCGCCATCTTAGCTTGCTTGCTTGAGATGTTGGTCTCTATAAATTGGATATCATGGTAAATAAATTAGTCGGCGTACGTATATTGCTTGGTGTATAACTGTATATTATATCAGGAACTAGAATTATTTTCCTTCAAGTCAGGAAGGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGGTTCAGTCTGGTTTTTCTTCCCTTTACTTTTCATGGCTTTTAATGATTTGAATTTGATAGTAAACGGCTCTTTTCTATTCCTATATACAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGTAAGCATTTTGTACACTCGTTTTCGAAATTTCGGGATGTTATTTGGTGTCTCGTGTTAATGTGGTGATCCAATGGAACTTTGTAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTAAATTATTTTCTAAGCGAGTTTCGGTTTTCTCCTCTTGCTCTGTTTGACGTAGTATCAAATTGTAGAAATGTTTTAATTAATTAAGCTCCGGATGTTTGGCAATACATTCAAGGTCCTAGGCTCAGCCTTTGAGGCTAAAAACTTAGGCCCAGTTTGATAACGATTTTGTTTTGTCTTCCCATAACATGTTTTCCACCTTTCTTAAAGAAACACTTGAATTCATAGTCAAATTTTTAAAACGAAAACAAGTTTTTTATCACAGTTTTTCTTCTCATTTTCAAAACTTGACTTAGTTTTTGAAAACATTGGTCAAAAGTGAATAACAAAACAAATAAACTTATAGGTAGAGTTAGTTTTACAGCCCAAGCCCACTGCTAGCAGATATTGTCTTCTTTGGGCTTTTCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTACTAGAGAGAGGTTTCCACACCCTTATAAAGAATGATCCATTCCCCTCTTCAACCGATGTGGGATCTCACAATTAGTGCTTATAAGTTTAATTTTAAATAAACAAGAAAAACCAAATGGTTATCAAATGGGTCTTTAGTAATTTAAAACCCATATTGTCTATGAATTTGGGCTTTGGGTAGACGTATCCTTTGCGGGGTTAGTGGCGTCGGTCATGAGTATATATATTGTAAGGAGCTAGTAGCCTTCAACAACATGGTTACAGAAAAATAATAGTAATGAACCAGGACTAGAAAGAAACTATTCAATGGTTCTATGATGCCAGAGTCTTCATAGTTCTTCCTCTACTTTGAACTTGAGAGCATTTCTATTGAAATCCGTCTGATCTGATGCTTGGGATGAATATGCATGTTTAGGTGAGATAGTTTCCGTGGAAATTGTAAAAAATACGTGCTGACGGTCGTGCGTTGAGACAGACAGTTAATTGGAATTTGAATTGGTCTCTTCTTATTTTCAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGGTACTCATCAAACCTTGATTTTCTGTATCAACTACGAATTTTGTATACTAATTCTTTGTCTCATTATAAATAGATATCAGTTTCACTTATATGTAAATATTACTCTGCGAATCTTTTGATGGATTTGTTGTATAATTGATCACGAATTGCACAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGTAACTGGCACCTTCATTACTTGTTGACCACTTGCTTACTCATTTGAATGCTCTAACAAGCCTTTAAATTTGATGTGTTAGGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGGTGCCTTAAATCGTTTCTTATACTGATATGACTTCGATCTTAATATGATATCGACCTGTTGTCGTTTTTTATTTCATATCATAGTTTCTACCATATTATACACGAGAGCGTAAGAAGGTTATATTTGTTGGATGATGAAAGTCCCACGTCGGCTAATTTAGGTAATGATCCTGGGTTTAGAAACAAAGAATACTCTCTCCATTGGTATGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGTTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGTTTGTTTAACATGGTATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAAGAAAAATGAGTCAAGCCTCCTCGAACGCAGTAAAAAATGACCAAGACTCCAAAGGAGTCGAGGCTCGGTTAAGGGGAGGCGTGCTTTGTTCGAGGGGAGGTATTGGATGATGAAAGTCCCACATCGGCTAATTTAGAGAATGATCATGGGTTTATAAACAGAGAATACTCTCTCCATTGGTATGAAGCCTTTTGGGGAAGGCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTATCATACCATTGTGGAGAGTCGTGTTCGTCTAACAATATTAATCCTTTCCTTTTTAGCATTCCTGTTAGTGAGTACTCTCTTTATAACAGGATCCCATCGTCGGTGGAAGCCTCCTCTTGACGTACACAACGGGGTATGTCGTGCCGTTACTTCTTGCTGCCTCATTCGCTGGAGCATTGCAGGTAACATGGTTATATATAATAGGAATGAGAATCAGAAGAGTATCAGCTGAGCCCCATTGGGTTATTTTTTGATGCTCTAATTATTCATTTTGGATTGATTTTTTGTCCTAAACGAGTGGTTACATGAGTGCAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGGTAATTCCTTTTAAACTCATACTTCACATGAATAAGATGAACAGATGAATTGTTGATCGGTGGTGGTGGTTGTATTTGTTGTTGATGCTTGCAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAGAACAGATTATTTCCAGTTCTTCAATTTGATGTGGATAAGCTCAACCCTCTGTAAATGTTTATTCAACCTTCAATCATAATCATCTCTATTACCCATTTAGTGTAAGGCGTTATTTTTGAAATAACGTTGCATGTTGACGATGAAATTATCTATACTCTACGCTTCATCTTAATCAA

mRNA sequence

TATCACTCTCTCGCTTTGCTTATTTTTCTTCTTCTTTGAGTTTGTGAGCGGAAGAAAGCTTTGGCAACTGCCACCCACAACAGCCCGCCCCCACATCCACAGGGTCCACTTCCTTCAACCCTTCTGAGCATCCGACTATCGATTAACTCCGCTCCAAATTCCGGAGTTCTTCCCCAATTTTTCAAATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAGAACAGATTATTTCCAGTTCTTCAATTTGATGTGGATAAGCTCAACCCTCTGTAAATGTTTATTCAACCTTCAATCATAATCATCTCTATTACCCATTTAGTGTAAGGCGTTATTTTTGAAATAACGTTGCATGTTGACGATGAAATTATCTATACTCTACGCTTCATCTTAATCAA

Coding sequence (CDS)

ATGGGTTTCCTTATGACCCATTCTGGTGGTTTCGGCATCAATTCCATCAAAATTTCAACCTCTAAACCTTTACTCGGCAGGCCGCCAGGTAAATATGTCGCCCCTTTGAAATTTCTTGGGGGACAATCCGCAGCTCAGGATCAAACTAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCGTTTCTGCTACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGAAAGAGCTGCTTCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGATTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTGAGTTTTACTAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTTGTTGGAAACTCTGTTGCTTTTGCATTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGTTTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGCGTGCAAGCATATCTGGCTGGGCTAACGTTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAG

Protein sequence

MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTNSSNHFHAMAFVNAVSATSFLAVDAAKAERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM
Homology
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BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match: CCDA_ARATH (Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.4e-98
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 1 

Query: 68  MAFVNAVSATSFLAVDAAKA--ERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLS 127
           +   N V+ +S  A D      ++A S+Y LA+G +GD +G FLYSA QQAN AVQDQLS
Sbjct: 67  LGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLS 126

Query: 128 ALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATT 187
           ALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSR +V+G++VAFALGLATT
Sbjct: 127 ALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATT 186

Query: 188 LALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAAN 247
           LALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN
Sbjct: 187 LALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAAN 246

Query: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------------------- 307
           FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                       
Sbjct: 247 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVA 306

Query: 308 --------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFP-VTMAM 322
                   SLLS RK S+WINPISGALLLGGG+Y+FLDRLFP  TM M
Sbjct: 307 ASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

[Close]
BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match: CCDA2_ORYSJ (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-97
Identity = 202/282 (71.63%), Postives = 220/282 (78.01%), Query Frame = 1 

Query: 74  VSATSFLAVDAAKAER------AASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSAL 133
           V+  S +A  AA A         +S   LAD  IGDW G  LYSAGQQAN AVQDQLSAL
Sbjct: 77  VAVGSLVAAGAANATEIGDSLLGSSGLALADLSIGDWFGNLLYSAGQQANEAVQDQLSAL 136

Query: 134 SFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLA 193
           SFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK R+EVVGNSVAF+LGLATTLA
Sbjct: 137 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLA 196

Query: 194 LLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFP 253
           +LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IELQLPSFF ++DPR+AAAN P
Sbjct: 197 ILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLP 256

Query: 254 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK------------------------- 313
           SSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                         
Sbjct: 257 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAAS 316

Query: 314 ------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 319
                 SLLSFR++S+WINPISGA LLGGGVY+ LDRLFP T
Sbjct: 317 FAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 358

[Close]
BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match: CCDA1_ORYSJ (Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.7e-97
Identity = 201/282 (71.28%), Postives = 220/282 (78.01%), Query Frame = 1 

Query: 74  VSATSFLAVDAAKAER------AASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSAL 133
           V+  S +A  AA A         +S   LAD  +GDW G  LYSAGQQAN AVQDQLSAL
Sbjct: 82  VAVGSLVAAGAANATEIGDSLLGSSGLALADLSVGDWFGNLLYSAGQQANEAVQDQLSAL 141

Query: 134 SFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLA 193
           SFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK R+EVVGNSVAF+LGLATTLA
Sbjct: 142 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLA 201

Query: 194 LLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFP 253
           +LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IELQLPSFF ++DPR+AAAN P
Sbjct: 202 ILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLP 261

Query: 254 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK------------------------- 313
           SSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                         
Sbjct: 262 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAAS 321

Query: 314 ------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 319
                 SLLSFR++S+WINPISGA LLGGGVY+ LDRLFP T
Sbjct: 322 FAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 363

[Close]
BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match: YCXN_PORPU (Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 56/176 (31.82%), Postives = 96/176 (54.55%), Query Frame = 1 

Query: 109 LYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSR 168
           LY++    N     QL+ ++  S + +F +G  TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 169 AEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL 228
            + + N   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + + MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 229 QLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSL 285
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +L
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNL 176

[Close]
BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match: YCXN_PYRYE (Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-16
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 1 

Query: 108 FLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS 167
           F+Y++    N     QL+ L+ TS + IF +G  TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 168 RAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE 227
                 N   F LG  ++   LGI A+   K Y Q   G+P  ++ + + MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 228 LQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKSLLS 287
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++ + +
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFT 178

[Close]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match: A0A0A0L5A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099700 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.6e-134
Identity = 281/363 (77.41%), Postives = 298/363 (82.09%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSK----PLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELV 60
           M FL+++SG F INSI+ISTSK    P      GK+V P+KFLG QS A DQ K I ELV
Sbjct: 1   MSFLVSNSGAFIINSIQISTSKHPNTPGSLVSLGKHVMPMKFLGTQSVADDQCKHI-ELV 60

Query: 61  ESTNSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFL 120
           ++ NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG L
Sbjct: 61  KNRNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGIL 120

Query: 121 YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRA 180
           YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+A
Sbjct: 121 YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKA 180

Query: 181 EVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ 240
           EVVGNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ
Sbjct: 181 EVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ 240

Query: 241 LPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-------- 300
           LPSFF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS        
Sbjct: 241 LPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGS 300

Query: 301 -----------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 322
                                  +SLLSFRKFSSWINPISGALLLGGG+Y+FLDRLFPVT
Sbjct: 301 LLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFPVT 360

[Close]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match: A0A067L4B6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00701 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 7.6e-107
Identity = 233/360 (64.72%), Postives = 267/360 (74.17%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVES-T 60
           M  L+ H    G+N+++ +          G+   P+K      + +  T DI    ++ +
Sbjct: 1   MSLLINHCVSCGLNNLRTNH---------GREKFPIKI-----SDKSSTNDIVSFSKNDS 60

Query: 61  NSSNHFHAMAFVNAVSATSFLAVDAAKA-------ERAASVYTLADGGIGDWIGGFLYSA 120
           N S+  + +A  ++++  + +A+DAAKA       E AAS+Y LADG  GDW G FLYSA
Sbjct: 61  NCSSRINTIA--SSIAVANLVAIDAAKAVTTSKLLEEAASIYALADGSTGDWFGTFLYSA 120

Query: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVV 180
           GQQAN AVQDQLSALSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSRAEV+
Sbjct: 121 GQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVI 180

Query: 181 GNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240
            +S+AF+LGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS
Sbjct: 181 ADSIAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240

Query: 241 FFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS----------- 300
           FF+NFDPR+AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS           
Sbjct: 241 FFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLVGGSLLL 300

Query: 301 --------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 322
                               +SLLSFRKFS+WINP+SGALLLGGGVY+FLDRLFP TMAM
Sbjct: 301 TYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSGALLLGGGVYTFLDRLFPPTMAM 344

[Close]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match: E0CSS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03530 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 5.4e-105
Identity = 232/362 (64.09%), Postives = 258/362 (71.27%), Query Frame = 1 

Query: 1   MGFLMTHS-GGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVEST 60
           M  ++ H    +G    K S+ K       GKY  P++     + A+D T+DI  L ++ 
Sbjct: 1   MNLVINHRHSSYGTPFCKFSSHK----HETGKYKVPVRVPKRSAMAEDLTQDIVSLSKTE 60

Query: 61  NSSNHFHAMAFVNAVSATS--FLAVDAAKA-------ERAASVYTLADGGIGDWIGGFLY 120
            S +     A  ++  A +  F   D AKA       E A SVYTLADG IGDW GGFLY
Sbjct: 61  KSGSFLIKTAATSSAFAAANFFATTDMAKAANIKDILEGATSVYTLADGSIGDWFGGFLY 120

Query: 121 SAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAE 180
           SAGQQAN AVQDQLSALSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK RAE
Sbjct: 121 SAGQQANAAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKGRAE 180

Query: 181 VVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQL 240
           V+GNSVAF+LGLATTLA+LG+AASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQL
Sbjct: 181 VIGNSVAFSLGLATTLAILGVAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQL 240

Query: 241 PSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKS------- 300
           PSFF+NFDPRSAAAN PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK        
Sbjct: 241 PSFFNNFDPRSAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSL 300

Query: 301 LLSFRK------------------------FSSWINPISGALLLGGGVYSFLDRLFPVTM 322
           LL++                          FS+WINP SGALLLGGG+Y+ LDRLFP +M
Sbjct: 301 LLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPTSGALLLGGGIYTLLDRLFPTSM 358

[Close]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match: C6TLS2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 6.0e-104
Identity = 211/282 (74.82%), Postives = 233/282 (82.62%), Query Frame = 1 

Query: 71  VNAVSATSFLAVDAAKAERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSALSFT 130
           +  ++    +A  AAKAE AAS+Y LADG +GDW GGFL+SAGQQAN AVQ QL++LSFT
Sbjct: 59  IGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFT 118

Query: 131 SLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLALLG 190
           SLAVI+GAG VTSLSPCTLSVLPLTLGYIGAFGSGKSRA+VVG+S+AF+LGLATTLALLG
Sbjct: 119 SLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLG 178

Query: 191 IAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSV 250
           + ASFAGKAYGQIGQGLPLAASGLA+IMGLNLLEIIEL+LPSFFD+FDPR+AAANFPSSV
Sbjct: 179 VGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSV 238

Query: 251 QAYLAGLTFALAASPCSTPVLATLLGYVATSK---------------------------- 310
           QAYLAGLTFALAASPCSTPVLATLLGYVA SK                            
Sbjct: 239 QAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIRGSLLLTYTTGYVSPLLLAASFAG 298

Query: 311 ---SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 322
              SLLSFRKFS+WINPISGA+LLGGGVY+FLDRLFPVTM M
Sbjct: 299 ALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 340

[Close]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match: I1KE49_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 6.0e-104
Identity = 211/282 (74.82%), Postives = 233/282 (82.62%), Query Frame = 1 

Query: 71  VNAVSATSFLAVDAAKAERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLSALSFT 130
           +  ++    +A  AAKAE AAS+Y LADG +GDW GGFL+SAGQQAN AVQ QL++LSFT
Sbjct: 79  IGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFT 138

Query: 131 SLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLALLG 190
           SLAVI+GAG VTSLSPCTLSVLPLTLGYIGAFGSGKSRA+VVG+S+AF+LGLATTLALLG
Sbjct: 139 SLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLG 198

Query: 191 IAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSV 250
           + ASFAGKAYGQIGQGLPLAASGLA+IMGLNLLEIIEL+LPSFFD+FDPR+AAANFPSSV
Sbjct: 199 VGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSV 258

Query: 251 QAYLAGLTFALAASPCSTPVLATLLGYVATSK---------------------------- 310
           QAYLAGLTFALAASPCSTPVLATLLGYVA SK                            
Sbjct: 259 QAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAG 318

Query: 311 ---SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 322
              SLLSFRKFS+WINPISGA+LLGGGVY+FLDRLFPVTM M
Sbjct: 319 ALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 360

[Close]
BLAST of Cp4.1LG14g00180 vs. TAIR10
Match: AT5G54290.2 (AT5G54290.2 cytochrome c biogenesis protein family)

HSP 1 Score: 360.1 bits (923), Expect = 1.4e-99
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 1 

Query: 68  MAFVNAVSATSFLAVDAAKA--ERAASVYTLADGGIGDWIGGFLYSAGQQANVAVQDQLS 127
           +   N V+ +S  A D      ++A S+Y LA+G +GD +G FLYSA QQAN AVQDQLS
Sbjct: 68  LGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLS 127

Query: 128 ALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATT 187
           ALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKSR +V+G++VAFALGLATT
Sbjct: 128 ALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATT 187

Query: 188 LALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAAN 247
           LALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIELQLPSFF+NFDPR+AAAN
Sbjct: 188 LALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAAN 247

Query: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSK----------------------- 307
           FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+                       
Sbjct: 248 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVA 307

Query: 308 --------SLLSFRKFSSWINPISGALLLGGGVYSFLDRLFP-VTMAM 322
                   SLLS RK S+WINPISGALLLGGG+Y+FLDRLFP  TM M
Sbjct: 308 ASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 355

[Close]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: gi|659102738|ref|XP_008452288.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X2 [Cucumis melo])

HSP 1 Score: 499.6 bits (1285), Expect = 4.1e-138
Identity = 287/360 (79.72%), Postives = 300/360 (83.33%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSKPLLG-RPPGKYVAPLKFLGGQSAAQDQTKDIDELVEST 60
           M  LM++SGGF INSIKISTSK L     PGKYV P+KFLG QSAA DQ +DI ELVE+ 
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCEDI-ELVENR 60

Query: 61  NSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSA 120
           NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG LYSA
Sbjct: 61  NSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSA 120

Query: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVV 180
           GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVV
Sbjct: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVV 180

Query: 181 GNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240
           GNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS
Sbjct: 181 GNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240

Query: 241 FFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS----------- 300
           FF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS           
Sbjct: 241 FFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLL 300

Query: 301 --------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 322
                               +SLLSFRKFSSWINPISGALLL GGVY+FLDRLFPVTMAM
Sbjct: 301 TYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: gi|659102736|ref|XP_008452287.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 2.3e-136
Identity = 287/366 (78.42%), Postives = 300/366 (81.97%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSK--PLLGRPP-----GKYVAPLKFLGGQSAAQDQTKDID 60
           M  LM++SGGF INSIKISTSK  P    P      GKYV P+KFLG QSAA DQ +DI 
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGSLVSLGKYVMPIKFLGRQSAADDQCEDI- 60

Query: 61  ELVESTNSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIG 120
           ELVE+ NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW G
Sbjct: 61  ELVENRNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFG 120

Query: 121 GFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK 180
           G LYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK
Sbjct: 121 GILYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK 180

Query: 181 SRAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII 240
           S+AEVVGNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII
Sbjct: 181 SKAEVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII 240

Query: 241 ELQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS----- 300
           ELQLPSFF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS     
Sbjct: 241 ELQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVI 300

Query: 301 --------------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLF 322
                                     +SLLSFRKFSSWINPISGALLL GGVY+FLDRLF
Sbjct: 301 GGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLF 360

[Close]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: gi|778676264|ref|XP_011650559.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X2 [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 1.9e-135
Identity = 281/359 (78.27%), Postives = 298/359 (83.01%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELVESTN 60
           M FL+++SG F INSI+ISTSK      PGK+V P+KFLG QS A DQ K I ELV++ N
Sbjct: 1   MSFLVSNSGAFIINSIQISTSKH--PNTPGKHVMPMKFLGTQSVADDQCKHI-ELVKNRN 60

Query: 61  SSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFLYSAG 120
           S N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240
           NSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS------------ 300
           F+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS            
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGSLLLT 300

Query: 301 -------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 322
                              +SLLSFRKFSSWINPISGALLLGGG+Y+FLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFPVTMAM 356

[Close]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: gi|449463144|ref|XP_004149294.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 8.0e-134
Identity = 281/363 (77.41%), Postives = 298/363 (82.09%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSK----PLLGRPPGKYVAPLKFLGGQSAAQDQTKDIDELV 60
           M FL+++SG F INSI+ISTSK    P      GK+V P+KFLG QS A DQ K I ELV
Sbjct: 1   MSFLVSNSGAFIINSIQISTSKHPNTPGSLVSLGKHVMPMKFLGTQSVADDQCKHI-ELV 60

Query: 61  ESTNSSNHFHAMAFVNAVSATSFLAVDAAKAER-------AASVYTLADGGIGDWIGGFL 120
           ++ NS N+F AMAFVNA+SATSFLAVDAAKAE        AASVYTLADGG+GDW GG L
Sbjct: 61  KNRNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGIL 120

Query: 121 YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRA 180
           YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+A
Sbjct: 121 YSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKA 180

Query: 181 EVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ 240
           EVVGNSVAF+LGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ
Sbjct: 181 EVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQ 240

Query: 241 LPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-------- 300
           LPSFF+NFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS        
Sbjct: 241 LPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGS 300

Query: 301 -----------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVT 322
                                  +SLLSFRKFSSWINPISGALLLGGG+Y+FLDRLFPVT
Sbjct: 301 LLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFPVT 360

[Close]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match: gi|645240655|ref|XP_008226705.1| (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Prunus mume])

HSP 1 Score: 421.4 bits (1082), Expect = 1.4e-114
Identity = 241/361 (66.76%), Postives = 273/361 (75.62%), Query Frame = 1 

Query: 1   MGFLMTHSGGFGINSIKISTSKPLLGRPPGKYVAPLKFLGGQSAA--QDQTKDIDELVES 60
           M   + H G +GINS  IS+ K       GKY+ P++ L G S +  QD ++D+  L +S
Sbjct: 1   MNLAINHCGSYGINSFTISSCKGGRKSSHGKYMVPIRMLRGPSTSTPQDLSQDLASLAKS 60

Query: 61  TNSSNHFHAMAFVNAVSATSFLAVDAAKA-------ERAASVYTLADGGIGDWIGGFLYS 120
             SS+ F     VN+++  + +  D AKA       E A S YTLADGG G+W GGFL+S
Sbjct: 61  DTSSS-FPFKTVVNSMAVANLVFADMAKAVSTGKFLEGAVSFYTLADGGPGEWFGGFLFS 120

Query: 121 AGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEV 180
           AGQ+AN AVQDQLSALSF+SLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+AEV
Sbjct: 121 AGQEANEAVQDQLSALSFSSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEV 180

Query: 181 VGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLP 240
           VGNS+AF+LGLATTLALLGI ASFAGKAYGQ GQGLPLAASGLA++MGLNLLE+IELQLP
Sbjct: 181 VGNSIAFSLGLATTLALLGIGASFAGKAYGQTGQGLPLAASGLAIVMGLNLLEVIELQLP 240

Query: 241 SFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS---------- 300
           SFF+NFDPR+AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS          
Sbjct: 241 SFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKNPVIGGSLL 300

Query: 301 ---------------------KSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMA 322
                                +SLLSFRKFS+WINPISGALLLGGGVY+FLDRLFPVTMA
Sbjct: 301 LTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPISGALLLGGGVYTFLDRLFPVTMA 360

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g00180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCDA_ARATH2.4e-9871.18Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thal... [more]
CCDA2_ORYSJ2.1e-9771.63Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa s... [more]
CCDA1_ORYSJ2.7e-9771.28Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa s... [more]
YCXN_PORPU1.4e-1631.82Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea PE=... [more]
YCXN_PYRYE4.0e-1631.84Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis PE=... [more]
BLAST of Cp4.1LG14g00180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5A0_CUCSA5.6e-13477.41Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099700 PE=4 SV=1[more]
A0A067L4B6_JATCU7.6e-10764.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00701 PE=4 SV=1[more]
E0CSS2_VITVI5.4e-10564.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03530 PE=4 SV=... [more]
C6TLS2_SOYBN6.0e-10474.82Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
I1KE49_SOYBN6.0e-10474.82Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of Cp4.1LG14g00180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54290.21.4e-9971.18 cytochrome c biogenesis protein family[more]
BLAST of Cp4.1LG14g00180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102738|ref|XP_008452288.1|4.1e-13879.72PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform ... [more]
gi|659102736|ref|XP_008452287.1|2.3e-13678.42PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform ... [more]
gi|778676264|ref|XP_011650559.1|1.9e-13578.27PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform ... [more]
gi|449463144|ref|XP_004149294.1|8.0e-13477.41PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform ... [more]
gi|645240655|ref|XP_008226705.1|1.4e-11466.76PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Prunus ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0017004cytochrome complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003834Cyt_c_assmbl_TM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0016020 membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003674 molecular_function
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005198 structural molecule activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g00180.1Cp4.1LG14g00180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003834Cytochrome C biogenesis protein, transmembrane domainPFAMPF02683DsbDcoord: 135..284
score: 2.7
NoneNo IPR availablePANTHERPTHR31272FAMILY NOT NAMEDcoord: 44..321
score: 1.7E
NoneNo IPR availablePANTHERPTHR31272:SF6CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEINcoord: 44..321
score: 1.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g00180Cucsa.074490Cucumber (Gy14) v1cgycpeB0118
Cp4.1LG14g00180CmaCh16G008060Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g00180CmoCh16G008630Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g00180Cla011749Watermelon (97103) v1cpewmB220
Cp4.1LG14g00180Csa3G099700Cucumber (Chinese Long) v2cpecuB215
Cp4.1LG14g00180MELO3C016553Melon (DHL92) v3.5.1cpemeB186
Cp4.1LG14g00180ClCG10G006520Watermelon (Charleston Gray)cpewcgB195
Cp4.1LG14g00180CSPI03G05870Wild cucumber (PI 183967)cpecpiB218
Cp4.1LG14g00180Lsi05G006880Bottle gourd (USVL1VR-Ls)cpelsiB176
Cp4.1LG14g00180MELO3C016553.2Melon (DHL92) v3.6.1cpemedB235
Cp4.1LG14g00180CsaV3_3G005970Cucumber (Chinese Long) v3cpecucB0258
Cp4.1LG14g00180Bhi11G000600Wax gourdcpewgoB0275
Cp4.1LG14g00180CsGy3G005990Cucumber (Gy14) v2cgybcpeB328
Cp4.1LG14g00180Carg24074Silver-seed gourdcarcpeB0308
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g00180Wax gourdcpewgoB0283
Cp4.1LG14g00180Cucurbita pepo (Zucchini)cpecpeB005
Cp4.1LG14g00180Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g00180Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG14g00180Cucumber (Gy14) v1cgycpeB0326
Cp4.1LG14g00180Cucurbita maxima (Rimu)cmacpeB469
Cp4.1LG14g00180Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g00180Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g00180Wild cucumber (PI 183967)cpecpiB206
Cp4.1LG14g00180Cucumber (Chinese Long) v2cpecuB203
Cp4.1LG14g00180Bottle gourd (USVL1VR-Ls)cpelsiB167
Cp4.1LG14g00180Watermelon (Charleston Gray)cpewcgB206
Cp4.1LG14g00180Watermelon (97103) v1cpewmB217
Cp4.1LG14g00180Cucumber (Gy14) v2cgybcpeB033
Cp4.1LG14g00180Silver-seed gourdcarcpeB0937
Cp4.1LG14g00180Cucumber (Chinese Long) v3cpecucB0244