Cp4.1LG13g09580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g09580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L35
Location	Cp4.1LG13 : 7378925 .. 7380620 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTTATTGGGCCGGAACAGTTGAGTGGGCTTAAATCCACCCTTATTTTCAGGCTCAAAAGGGCAAATTTGGCATTTCGTAAATGGTACTTAACTCCCTTCTCTTTGAAAACCCTAGTCTTCTCAATAGCAGCTCTTTCACCAGGTTCCCATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACTCGAGAAGAAATGGGTAGGTTTTCTGTCAGATCTTCTCATAAACGAAATTAAACATACTCAATTCGCTTTTGGCTCTCTAATTCTTCGAGGATAATGATGAATTTTTTGTTATTCAATTTGGTGTTTTCGGTTTGTAGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATGTAATTCCTTTTTCTTTTAATTATTTTTATTTTTTCCCGTGATACGTCTCATTCTTTTGTTGACCTTGTTGTTCTGTATGGTTGATTTTGCAGCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGTAATTATTTCATCTTGATATTACTTTCAGTACAGCGTGATTTTGTGTGTTCGTCTCTTAACTGTTTTCTGGCCCTAGTATGGATTATATTCTTAAATGTTGACAATGTCTGTGCATGATACCGTTGAGATTTTCTACGTTGCCAAAAAAGAGTTTCAAACTACTTGTTGCCTATTGGTTTGGATGAGAAACAGTAAAGAATTGAATTGGGAAGGAAATGCCATTGAACTTGTACAAGAGTAGTGGATGGGTTTTTTGCTAGTTTCAAAACCTTGATATCTGAAGTTGAACGAAGTATTTTAGGTCCTGCTTGATAACAATTTCATTTCTAATCATGGTTTTGGAATTTCGTTTGTTTCCTCTCAATTTCATTTCGTTTGTAGAACATATACAGAGTGGATAACAAACTAAATAAAGGAACTTACCTCTTGTTTTATAAGCTTAATTGACTAAAACCAAAGTCAAATAAGCAAACGATCATCAAACGAAGCCTTGATTAATTAGAATTATGGTTTCTTAACCAAGTCTTCAAGTAATGCTGTAGAATTGGTTAGGTATGTGGATGATACCATCTGATTCCTTTTCTAATCACTTTCTTGATGCAATTGTAATACTATGAACCATTTCTTTCTCTTTTGAGTATGGTTTCAACAATTTTGTTGAATGATTCCATTGTATGATGCAGGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCATTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGCTGTTCTATTTTCATTGACAATTATATATTTGAGAGTTTAGCGTTTTTTCTTCATGTTTTTTGAACTTATTTTTAAGTTCATTCTACTTTAAGC

mRNA sequence

TGGATTTATTGGGCCGGAACAGTTGAGTGGGCTTAAATCCACCCTTATTTTCAGGCTCAAAAGGGCAAATTTGGCATTTCGTAAATGGTACTTAACTCCCTTCTCTTTGAAAACCCTAGTCTTCTCAATAGCAGCTCTTTCACCAGGTTCCCATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACTCGAGAAGAAATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCATTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGCTGTTCTATTTTCATTGACAATTATATATTTGAGAGTTTAGCGTTTTTTCTTCATGTTTTTTGAACTTATTTTTAAGTTCATTCTACTTTAAGC

Coding sequence (CDS)

ATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-50
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+K +LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRR+LTKHQ SLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TrEMBL
Match: A0A0A0KQT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-51
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TrEMBL
Match: A0A0A0KLK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TrEMBL
Match: A0A0D2VIS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-50
Identity = 115/123 (93.50%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYKKKK LPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TrEMBL
Match: A0A0D2TYC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-50
Identity = 115/123 (93.50%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK +LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKK LPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKAALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TrEMBL
Match: A0A0D2QWH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G003700 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-50
Identity = 115/123 (93.50%), Postives = 119/123 (96.75%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK +LLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRNKSKTELLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKK LPLDLRPKKTRAIRR+LTKHQ SLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKAALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR10
Match: AT2G39390.1 (AT2G39390.1 Ribosomal L29 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 7.7e-51
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR10
Match: AT3G09500.1 (AT3G09500.1 Ribosomal L29 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 1.3e-50
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR10
Match: AT3G55170.1 (AT3G55170.1 Ribosomal L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 6.5e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR10
Match: AT5G02610.2 (AT5G02610.2 Ribosomal L29 family protein )

HSP 1 Score: 183.3 bits (464), Expect = 8.8e-47
Identity = 110/146 (75.34%), Postives = 116/146 (79.45%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKI------------- 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKI             
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIRMDVDLAYDSNMY 60

Query: 61  ----------KVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTK 120
                     KVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTK
Sbjct: 61  LRSIKFGPCIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTK 120

Query: 121 HQASLKTEREKKKEMYYPLRKYAIKV 124
           HQASLKTEREKKKEMY+P+RKYAIKV
Sbjct: 121 HQASLKTEREKKKEMYFPVRKYAIKV 146

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: gi|449464196|ref|XP_004149815.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-51
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: gi|449466494|ref|XP_004150961.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-51
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: gi|659127102|ref|XP_008463526.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 5.5e-51
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKE+Y+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKELYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: gi|659123350|ref|XP_008461617.1| (PREDICTED: 60S ribosomal protein L35-like [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQ SLKTER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: gi|823247035|ref|XP_012456191.1| (PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii])

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50
Identity = 115/123 (93.50%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYKKKK LPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL35_EUPES	2.1e-50	90.24	60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1	[more]
RL352_ARATH	1.4e-49	89.43	60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1	[more]
RL354_ARATH	1.8e-49	89.43	60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1	[more]
RL351_ARATH	2.3e-49	89.43	60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1	[more]
RL353_ARATH	1.2e-48	88.62	60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1	[more]

BLAST of Cp4.1LG13g09580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQT2_CUCSA	1.7e-51	95.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1	[more]
A0A0A0KLK6_CUCSA	2.3e-51	95.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1	[more]
A0A0D2VIS1_GOSRA	1.5e-50	93.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1	[more]
A0A0D2TYC8_GOSRA	1.9e-50	93.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1	[more]
A0A0D2QWH5_GOSRA	3.3e-50	93.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G003700 PE=3 SV=1	[more]

BLAST of Cp4.1LG13g09580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39390.1	7.7e-51	89.43	Ribosomal L29 family protein	[more]
AT3G09500.1	1.3e-50	89.43	Ribosomal L29 family protein	[more]
AT3G55170.1	6.5e-50	88.62	Ribosomal L29 family protein	[more]
AT5G02610.2	8.8e-47	75.34	Ribosomal L29 family protein	[more]

BLAST of Cp4.1LG13g09580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464196\|ref\|XP_004149815.1\|	2.5e-51	95.93	PREDICTED: 60S ribosomal protein L35 [Cucumis sativus]	[more]
gi\|449466494\|ref\|XP_004150961.1\|	3.3e-51	95.93	PREDICTED: 60S ribosomal protein L35 [Cucumis sativus]	[more]
gi\|659127102\|ref\|XP_008463526.1\|	5.5e-51	95.12	PREDICTED: 60S ribosomal protein L35 [Cucumis melo]	[more]
gi\|659123350\|ref\|XP_008461617.1\|	1.2e-50	95.12	PREDICTED: 60S ribosomal protein L35-like [Cucumis melo]	[more]
gi\|823247035\|ref\|XP_012456191.1\|	2.1e-50	93.50	PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR001854	Ribosomal_L29/L35

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09580.1	Cp4.1LG13g09580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29	GENE3D	G3DSA:1.10.287.310		coord: 1..62 score: 2.8
IPR001854	Ribosomal protein L29	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12
IPR001854	Ribosomal protein L29	PFAM	PF00831	Ribosomal_L29	coord: 8..64 score: 3.0
IPR001854	Ribosomal protein L29	TIGRFAMs	TIGR00012	TIGR00012	coord: 8..64 score: 1.8
IPR001854	Ribosomal protein L29	unknown	SSF46561	Ribosomal protein L29 (L29p)	coord: 4..65 score: 6.15
None	No IPR available	GENE3D	G3DSA:1.10.240.10		coord: 63..113 score: 7.
None	No IPR available	PANTHER	PTHR13872	60S RIBOSOMAL PROTEIN L35	coord: 1..123 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g09580	Cucsa.165680	Cucumber (Gy14) v1	cgycpeB0455
Cp4.1LG13g09580	Cucsa.182670	Cucumber (Gy14) v1	cgycpeB0501
Cp4.1LG13g09580	CmaCh15G004160	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g09580	CmoCh15G004300	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g09580	Cla004706	Watermelon (97103) v1	cpewmB166
Cp4.1LG13g09580	Csa5G505200	Cucumber (Chinese Long) v2	cpecuB176
Cp4.1LG13g09580	Csa5G178720	Cucumber (Chinese Long) v2	cpecuB185
Cp4.1LG13g09580	MELO3C025480	Melon (DHL92) v3.5.1	cpemeB155
Cp4.1LG13g09580	ClCG09G020260	Watermelon (Charleston Gray)	cpewcgB154
Cp4.1LG13g09580	CSPI05G17190	Wild cucumber (PI 183967)	cpecpiB178
Cp4.1LG13g09580	Lsi02G016790	Bottle gourd (USVL1VR-Ls)	cpelsiB141
Cp4.1LG13g09580	Lsi04G008480	Bottle gourd (USVL1VR-Ls)	cpelsiB150
Cp4.1LG13g09580	MELO3C025480.2	Melon (DHL92) v3.6.1	cpemedB182
Cp4.1LG13g09580	MELO3C023820.2	Melon (DHL92) v3.6.1	cpemedB188
Cp4.1LG13g09580	CsaV3_5G006630	Cucumber (Chinese Long) v3	cpecucB0223
Cp4.1LG13g09580	CsaV3_5G026180	Cucumber (Chinese Long) v3	cpecucB0211
Cp4.1LG13g09580	Bhi06G000604	Wax gourd	cpewgoB0241
Cp4.1LG13g09580	CsGy5G016890	Cucumber (Gy14) v2	cgybcpeB599
Cp4.1LG13g09580	Carg04526	Silver-seed gourd	carcpeB0961
Cp4.1LG13g09580	Carg02372	Silver-seed gourd	carcpeB0366

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG13g09580	Cp4.1LG01g24130	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG13g09580	Cp4.1LG01g10480	Cucurbita pepo (Zucchini)	cpecpeB212
Cp4.1LG13g09580	Cp4.1LG01g04670	Cucurbita pepo (Zucchini)	cpecpeB213

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g09580	Silver-seed gourd	carcpeB1385
Cp4.1LG13g09580	Cucumber (Chinese Long) v3	cpecucB0205
Cp4.1LG13g09580	Wax gourd	cpewgoB0235
Cp4.1LG13g09580	Wax gourd	cpewgoB0259
Cp4.1LG13g09580	Cucurbita pepo (Zucchini)	cpecpeB211
Cp4.1LG13g09580	Cucurbita pepo (Zucchini)	cpecpeB214
Cp4.1LG13g09580	Cucurbita pepo (Zucchini)	cpecpeB219
Cp4.1LG13g09580	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g09580	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g09580	Cucumber (Gy14) v2	cgybcpeB315
Cp4.1LG13g09580	Cucumber (Gy14) v2	cgybcpeB481
Cp4.1LG13g09580	Melon (DHL92) v3.6.1	cpemedB214
Cp4.1LG13g09580	Silver-seed gourd	carcpeB0962