Cp4.1LG01g24130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g24130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L35
LocationCp4.1LG01 : 19245272 .. 19246579 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGACTAATTGGGCCGGATTAATTGAGTGGGCTAAAACGGCCCTTATTTTGAGGCCCAAAAGGGCAAATTAGGCAATTTGAAAGATTATAATATCACAACCTTTATCTTGTTCCCAAAAGCCCTAGTCTTCTTAGTAGCAGCTCTTTTCACCGGGTTCCATCTTCTCTTCCTAGGGTTTCGCCGCGGGCGGCGCAGAGTCGAAGAGGACGCTAGAAGAAATGGGTTAGTTCTAAAGAAATCTTATCATTATTGAAATTAGACGTTCTTGATTCAGATTCTGGCTCACTTGTTTCTTGAGGAAAACGATGGAGTTTATGTTGTTGAATTTGATGTTTTTTGGTTTGTAGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCCCCAAACAAGCTATCCAAAATGTGATTTCCTTTTCCTCGAGTCTGTTTTTAGGTTTTTTCCGCAATGCATATCGTTGTGTTGTTGAATTTGTTGTTCTTTGTGGTTGATTTTGCAGCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGTAACTCTTCGGCTTTATCCTGTTTCCTTCCTTAACTCTTTTTGCCTCCAAGTATGGACTATGTTCATGTGCAATCTCCATTGCAAAAAATAGTGCCAAACTAGTTGTTGGCGATTTGATTTTTCAAGAGAGATTTGGATGAGGAATAGTAAATCATTATTGAATTTGGCTTTGGATGCAAATGCTGGCGAACATACAACCTTGATTCCTGTTCTAATCACTTTCAGTGCTGTTAGCTGGTTGGTAATCCATTTCTTTCGACCTTTTTGTTGAGTGAATCCAATTTTTTATGCAGGCATCTCTGGTAACTGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGACTTATGCTATTAAGGTGTAGTAGTATTGTCTTGTGTTCTTGTGGACAAGTTTTGTCTCGTGTTCTTGATAATCTTATGTCTGATACACACTTTAATCTTTCCCCCCAAAACCGAAATGTTTGATTTCCATAGACAGTTCTATATTTTTACAGATAGCGTAAGTTCAATTTCTGCTATTCCTTTCTTGAAAAATCTTTAGCTTTCTTTTATCGGCTTGTTTG

mRNA sequence

CAAGACTAATTGGGCCGGATTAATTGAGTGGGCTAAAACGGCCCTTATTTTGAGGCCCAAAAGGGCAAATTAGGCAATTTGAAAGATTATAATATCACAACCTTTATCTTGTTCCCAAAAGCCCTAGTCTTCTTAGTAGCAGCTCTTTTCACCGGGTTCCATCTTCTCTTCCTAGGGTTTCGCCGCGGGCGGCGCAGAGTCGAAGAGGACGCTAGAAGAAATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCCCCAAACAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACTGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGACTTATGCTATTAAGGTGTAGTAGTATTGTCTTGTGTTCTTGTGGACAAGTTTTGTCTCGTGTTCTTGATAATCTTATGTCTGATACACACTTTAATCTTTCCCCCCAAAACCGAAATGTTTGATTTCCATAGACAGTTCTATATTTTTACAGATAGCGTAAGTTCAATTTCTGCTATTCCTTTCTTGAAAAATCTTTAGCTTTCTTTTATCGGCTTGTTTG

Coding sequence (CDS)

ATGGCGAGGATTAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCTGATCTGTTGACACAGCTTAAAGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTTGCTAAAGTTACTGGCGGAGCCCCAAACAAGCTATCCAAAATCAAGGTGGTAAGATTATCGATCGCTCAAGTTTTGACAGTAATTTCACAGAAGCAGAAAGCAGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGTCCAAAGAAGACCAGAGCCATTCGTAGAAGGCTCACCAAGCACCAGGCATCTCTGGTAACTGAGCGACAGAAGAAAAAGGAGATGTACTATCCATTGAGGACTTATGCTATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYAIKV
Homology
[Close]
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-50
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-49
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.8e-49
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-48
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match: A0A0A0KQT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.8e-52
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMY+PLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match: A0A0A0KLK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-51
Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMYYPLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match: A0A0D2VIS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.5e-50
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK+ALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match: A0A0D2TYC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-49
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK +LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKAALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match: A0A0D2QWH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G003700 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-49
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK +LLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRNKSKTELLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKK LPLDLRPKKTRAIRRRLTKHQ SL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKAALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TAIR10
Match: AT2G39390.1 (AT2G39390.1 Ribosomal L29 family protein )

HSP 1 Score: 195.7 bits (496), Expect = 1.7e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TAIR10
Match: AT3G09500.1 (AT3G09500.1 Ribosomal L29 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 3.8e-50
Identity = 108/123 (87.80%), Postives = 116/123 (94.31%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TAIR10
Match: AT3G55170.1 (AT3G55170.1 Ribosomal L29 family protein )

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-49
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASL TER+KKK+MY+P+R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. TAIR10
Match: AT5G02610.2 (AT5G02610.2 Ribosomal L29 family protein )

HSP 1 Score: 180.6 bits (457), Expect = 5.7e-46
Identity = 108/146 (73.97%), Postives = 114/146 (78.08%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKI------------- 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKI             
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIRMDVDLAYDSNMY 60

Query: 61  ----------KVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTK 120
                     KVVR SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTK
Sbjct: 61  LRSIKFGPCIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTK 120

Query: 121 HQASLVTERQKKKEMYYPLRTYAIKV 124
           HQASL TER+KKKEMY+P+R YAIKV
Sbjct: 121 HQASLKTEREKKKEMYFPVRKYAIKV 146

[Close]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match: gi|449464196|ref|XP_004149815.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMY+PLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match: gi|449466494|ref|XP_004150961.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 118/123 (95.93%), Postives = 119/123 (96.75%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKEMYYPLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match: gi|659127102|ref|XP_008463526.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-51
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASL TERQKKKE+Y+PLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKELYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match: gi|659123350|ref|XP_008461617.1| (PREDICTED: 60S ribosomal protein L35-like [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-51
Identity = 117/123 (95.12%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SL TERQKKKEMYYPLR YA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match: gi|823247035|ref|XP_012456191.1| (PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRTYA 120
           ISQKQK+ALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASL TER+KKKEMY+P+R YA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g24130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL35_EUPES4.7e-5089.4360S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1[more]
RL352_ARATH3.0e-4988.6260S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1[more]
RL351_ARATH6.8e-4987.8060S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1[more]
RL354_ARATH1.2e-4887.8060S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1[more]
RL353_ARATH3.4e-4886.9960S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1[more]
BLAST of Cp4.1LG01g24130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQT2_CUCSA7.8e-5296.75Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1[more]
A0A0A0KLK6_CUCSA1.3e-5195.93Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1[more]
A0A0D2VIS1_GOSRA9.5e-5091.87Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1[more]
A0A0D2TYC8_GOSRA1.2e-4991.87Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1[more]
A0A0D2QWH5_GOSRA2.1e-4991.87Uncharacterized protein OS=Gossypium raimondii GN=B456_004G003700 PE=3 SV=1[more]
BLAST of Cp4.1LG01g24130 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39390.11.7e-5088.62 Ribosomal L29 family protein [more]
AT3G09500.13.8e-5087.80 Ribosomal L29 family protein [more]
AT3G55170.11.9e-4986.99 Ribosomal L29 family protein [more]
AT5G02610.25.7e-4673.97 Ribosomal L29 family protein [more]
BLAST of Cp4.1LG01g24130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464196|ref|XP_004149815.1|1.1e-5196.75PREDICTED: 60S ribosomal protein L35 [Cucumis sativus][more]
gi|449466494|ref|XP_004150961.1|1.9e-5195.93PREDICTED: 60S ribosomal protein L35 [Cucumis sativus][more]
gi|659127102|ref|XP_008463526.1|2.5e-5195.93PREDICTED: 60S ribosomal protein L35 [Cucumis melo][more]
gi|659123350|ref|XP_008461617.1|7.2e-5195.12PREDICTED: 60S ribosomal protein L35-like [Cucumis melo][more]
gi|823247035|ref|XP_012456191.1|1.4e-4991.87PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001854Ribosomal_L29/L35
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24130.1Cp4.1LG01g24130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29GENE3DG3DSA:1.10.287.310coord: 1..71
score: 8.3
IPR001854Ribosomal protein L29HAMAPMF_00374Ribosomal_L29coord: 4..64
score: 12
IPR001854Ribosomal protein L29PFAMPF00831Ribosomal_L29coord: 8..64
score: 6.2
IPR001854Ribosomal protein L29TIGRFAMsTIGR00012TIGR00012coord: 8..64
score: 7.1
IPR001854Ribosomal protein L29unknownSSF46561Ribosomal protein L29 (L29p)coord: 4..65
score: 2.35
NoneNo IPR availableunknownCoilCoilcoord: 14..34
scor
NoneNo IPR availablePANTHERPTHR1387260S RIBOSOMAL PROTEIN L35coord: 1..123
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g24130CmaCh04G026140Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g24130CmoCh04G027380Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g24130Cla004706Watermelon (97103) v1cpewmB381
Cp4.1LG01g24130Csa5G505200Cucumber (Chinese Long) v2cpecuB445
Cp4.1LG01g24130MELO3C025480Melon (DHL92) v3.5.1cpemeB350
Cp4.1LG01g24130ClCG09G020260Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g24130CSPI05G17190Wild cucumber (PI 183967)cpecpiB446
Cp4.1LG01g24130Lsi02G016790Bottle gourd (USVL1VR-Ls)cpelsiB336
Cp4.1LG01g24130MELO3C025480.2Melon (DHL92) v3.6.1cpemedB410
Cp4.1LG01g24130CsaV3_5G026180Cucumber (Chinese Long) v3cpecucB0554
Cp4.1LG01g24130Bhi06G000604Wax gourdcpewgoB0499
Cp4.1LG01g24130CsGy5G016890Cucumber (Gy14) v2cgybcpeB654
Cp4.1LG01g24130Carg04526Silver-seed gourdcarcpeB0965
Cp4.1LG01g24130Carg02372Silver-seed gourdcarcpeB0370
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g24130Cp4.1LG13g09580Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g24130Cucumber (Chinese Long) v3cpecucB0502
Cp4.1LG01g24130Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g24130Cucumber (Gy14) v1cgycpeB0016
Cp4.1LG01g24130Cucurbita pepo (Zucchini)cpecpeB211
Cp4.1LG01g24130Cucurbita pepo (Zucchini)cpecpeB384
Cp4.1LG01g24130Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG01g24130Cucurbita maxima (Rimu)cmacpeB312
Cp4.1LG01g24130Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g24130Cucurbita maxima (Rimu)cmacpeB877
Cp4.1LG01g24130Cucurbita moschata (Rifu)cmocpeB276
Cp4.1LG01g24130Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g24130Cucurbita moschata (Rifu)cmocpeB814
Cp4.1LG01g24130Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g24130Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g24130Bottle gourd (USVL1VR-Ls)cpelsiB324
Cp4.1LG01g24130Bottle gourd (USVL1VR-Ls)cpelsiB332
Cp4.1LG01g24130Watermelon (Charleston Gray)cpewcgB340
Cp4.1LG01g24130Watermelon (97103) v1cpewmB378
Cp4.1LG01g24130Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g24130Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g24130Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g24130Silver-seed gourdcarcpeB0374