Cp4.1LG13g09020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g09020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA exonuclease-like protein
LocationCp4.1LG13 : 7736009 .. 7737153 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTAGCTCTTTACCTTCAAAATCTTGAATCCTCCTTTCTTTTTTGGCTGTTTTGATCAGGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTAAGTTATTTTTCGTGGCGAATCCTTTAAAATTTAGAGACCAAATAAACCTAATTCTATTTTAGAATTGGAGTATAATTTTTTTATAATTTAACCGCTTTGATATGTAAAAATAAAATTAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGGTAAATTCTTCAAACAAAAATTAAATTTATCGTGACCCATCAACTCAAAATTTTAAATTTCTTATCGAGATTTGAAGTTCTAACCTTATATCAACTTTTTACGAAACCCTTTTAAGATCTTGACGAAGATTGCTTGGTTTCATGCACTGATCCACAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTTTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGGCAAGTACCATTTTCAATTCAAATTTCATTCAAAAACGAACACGATTTTTAAAAAATAACACACGAAATGATTATCGAGCAACGTTTATGTAATAAACGAATAATTGGTATTTGTTATTGTAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

mRNA sequence

ATGAAAGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

Coding sequence (CDS)

ATGAAAGGGCTTCTTGCTCGTTTGGCCAGCTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGCGATGGGTCGCTGGATGTCTGCGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATATCGTCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGATTTGAGATTCAAAATGGAGTACAAGATCTTTATGATTGTGTTGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAGAATGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCT

Protein sequence

MKGLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRFEIQNGVQDLYDCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS
Homology
[Close]
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match: REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1 

Query: 11  LGIRDGSTAID-------GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENIVF 70
           LG  +GS ++        GG TR    +AL C+ VG G  G   + A+V ++++    V+
Sbjct: 220 LGQSEGSVSLSLVKEQAFGGLTRA---LALDCEMVGVGPKGEESMAARVSIVNQYGKCVY 279

Query: 71  YSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDD 130
             YVKP  PVT+YR   +GIRPE+L+    L+ VQK++ ++L     K R+LVGH + +D
Sbjct: 280 DKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML-----KGRILVGHALHND 339

Query: 131 LKRLQIGYPSIMIR 137
           LK L + +P   IR
Sbjct: 340 LKVLFLDHPKKKIR 345

[Close]
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1 

Query: 31  VALACKYVGGG-DGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRD 90
           VA+ C+ VG G DG   + A+V +++     V+  YVKP   VT+YR   +GIRPE ++ 
Sbjct: 235 VAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKK 294

Query: 91  AMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
             P K VQK++ +IL     + R LVGH V +DLK L + +P   IR
Sbjct: 295 GEPFKVVQKEVSEIL-----RGRTLVGHAVHNDLKILFLDHPKKAIR 336

[Close]
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match: REXO4_KLULA (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX4 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 1 

Query: 24  RTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTG 83
           RT G G  V++ C++VG G DG     A+V +++   N+V   +V+P  PVT++R   +G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 84  IRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
           I+P H+ +A+  +  QK++ ++L     K R+LVGH V  DL  L + +P  MIR
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL-----KGRILVGHSVHHDLTALMLSHPRRMIR 221

[Close]
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match: REXO4_MOUSE (RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-13
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 22  GGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETT 81
           GG T+    +AL C+ VG G  G   + A+V ++++    V+  YVKP  PVT+YR   +
Sbjct: 248 GGLTKA---LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVS 307

Query: 82  GIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIR 137
           GIRPE+L+     + V+K++ ++L     K R+LVGH + +DLK L + +P   IR
Sbjct: 308 GIRPENLKQGEEFEVVKKEVAEML-----KGRILVGHALHNDLKVLFLDHPKKKIR 355

[Close]
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 1 

Query: 18  TAIDGGRTRGSGP-VALACKYVG-GGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNY 77
           T I+  +++  G  +A+ C++VG G +G     A++ +++   ++V   +VKP   V  +
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167

Query: 78  RYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 137
           R   +GI+PEH+++A+  K+ QKK  DIL     + R+LVGH ++ DL+ L + +P  ++
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADIL-----EGRILVGHALKHDLEALMLSHPKSLL 223

[Close]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match: D9ZIT5_MALDO (C2H2L domain class transcription factor OS=Malus domestica GN=C2H2L25 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 145/237 (61.18%), Postives = 170/237 (71.73%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLL R A+LGIRD +   +GG TRG+  VALACK VGGG DGSLD+CAKVCL DE +NI+
Sbjct: 107 GLLGRFANLGIRDNT---EGGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLTDEYDNII 166

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F SYVKP++PVTNYRYETTGIRPE+LRDAMPL+QVQKKIQD L NG         G KAR
Sbjct: 167 FQSYVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKAR 226

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH ++ DL  LQ  YP +MIR                           +EIQ G+QD
Sbjct: 227 ILVGHGLDHDLDSLQFEYPQVMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYEIQTGIQD 286

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  M+LY RMRSQVH++E +P+ASDPQN+NNFAAWR+NELERMSP+QMLEIS
Sbjct: 287 PYEDCVATMKLYMRMRSQVHKVEAYPLASDPQNRNNFAAWRQNELERMSPDQMLEIS 340

[Close]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match: M5WT09_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008078mg PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.0e-69
Identity = 143/229 (62.45%), Postives = 169/229 (73.80%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLL R A+LGIRD +   + G TRG+  VALACK VGGG DGSLD+CAKVCLIDE ENI+
Sbjct: 107 GLLGRFANLGIRDNT---ENGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLIDEYENII 166

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F SYVKP++PVTNYRYETTGIRPE+LRDAMPL+QVQKKIQD L NG         G KAR
Sbjct: 167 FQSYVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKAR 226

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR-------------------FEIQNGVQDLY-DCVGG 182
           +LVGH ++ DL  LQ+ YP +MIR                   ++IQ G+QD Y DCV  
Sbjct: 227 ILVGHGLDHDLDSLQVEYPQVMIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYEDCVAT 286

Query: 183 MRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           M+LY RMRSQVH+ E +P+ASDPQN+NNFA+WR+NELERM+PEQMLE S
Sbjct: 287 MKLYMRMRSQVHKTEAYPLASDPQNRNNFASWRQNELERMNPEQMLEAS 332

[Close]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match: W9S0J7_9ROSA (RNA exonuclease 4 OS=Morus notabilis GN=L484_020501 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.7e-68
Identity = 145/242 (59.92%), Postives = 173/242 (71.49%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTR--GSGP--VALACKYVGGG-DGSLDVCAKVCLIDES 62
           G+L RL++LGIRD       GR+   G+GP  VALACK VGGG DGSLD+CA+VCLIDE 
Sbjct: 109 GVLGRLSNLGIRDNLAMDYSGRSTRGGAGPQVVALACKMVGGGSDGSLDICARVCLIDEF 168

Query: 63  ENIVFYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------- 122
           ENI+F+SYVKP IPVTNYRYETTGIRPE+LRDAMP++QVQKKIQD L NG          
Sbjct: 169 ENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPVRQVQKKIQDFLCNGEPMWKIRPRS 228

Query: 123 GEKARVLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQ 182
           G KAR+LVGH ++ DL RLQ+ YPS+MIR                           ++IQ
Sbjct: 229 GGKARILVGHGLDHDLDRLQLEYPSVMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQ 288

Query: 183 NGVQDLY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLE 202
           +G+QD Y DCV  MRLY RMRSQ HR+E +P+ASDPQN+NNFA+WR+ ELERM+PEQMLE
Sbjct: 289 SGIQDPYEDCVATMRLYMRMRSQNHRVEDYPLASDPQNRNNFASWRQTELERMTPEQMLE 348

[Close]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match: A0A0D2R3S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G340600 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.9e-66
Identity = 138/238 (57.98%), Postives = 170/238 (71.43%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           G+ A +A+LG+RD  T ID G +RG   VALACK VGGG D SLD+CA+VC+IDE+ENI+
Sbjct: 103 GISAYMANLGLRDSLT-IDNGYSRGPQVVALACKTVGGGSDRSLDLCARVCIIDENENII 162

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG----------GEKA 122
           F+++VKP IPVTNYRYETTGIRPEHLRDAMPL+QVQ+K+QD L NG          G KA
Sbjct: 163 FHTFVKPPIPVTNYRYETTGIRPEHLRDAMPLRQVQRKVQDFLCNGEPTWKIRSPKGGKA 222

Query: 123 RVLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQ 182
           R+LVGH ++ DL ++Q+ YP IMIR                           ++IQNG+Q
Sbjct: 223 RILVGHGLDHDLDKMQVEYPPIMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQNGIQ 282

Query: 183 DLY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           D Y DCV  MRLY RMR QVHR + +P+ASDPQN+NNFA+WR+NELERMSPE+ML IS
Sbjct: 283 DPYEDCVATMRLYVRMRRQVHRRQDYPLASDPQNRNNFASWRQNELERMSPEEMLAIS 339

[Close]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match: A0A061ED94_THECC (C2H2L domain class transcription factor OS=Theobroma cacao GN=TCM_016880 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 136/238 (57.14%), Postives = 171/238 (71.85%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVG-GGDGSLDVCAKVCLIDESENIV 62
           G+ ARLA+LG+RD S  ID G +RG   VALACK VG G DGSLD+CA+VC+IDE+EN++
Sbjct: 103 GIAARLANLGLRD-SLTIDNGFSRGPQVVALACKMVGAGSDGSLDLCARVCIIDENENMI 162

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG----------GEKA 122
           +++YVKP IPVTNYRYETTGIRPE+LRDA PL+QVQ++IQD L+NG          G KA
Sbjct: 163 YHTYVKPPIPVTNYRYETTGIRPEYLRDATPLRQVQRRIQDFLFNGEPMWKIRSPKGGKA 222

Query: 123 RVLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQ 182
           R+LVGH ++ DL RLQ+ YP+IMIR                           ++IQ G+Q
Sbjct: 223 RILVGHGLDHDLDRLQVEYPAIMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQ 282

Query: 183 DLY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           D Y DCV  MRLY RMR+Q HR E++P+ASDPQN+NNFA+WR++ELERMSPE+ML  S
Sbjct: 283 DPYEDCVATMRLYMRMRNQAHRRENYPLASDPQNRNNFASWRQSELERMSPEEMLATS 339

[Close]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match: AT5G40310.1 (AT5G40310.1 Exonuclease family protein)

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-60
Identity = 127/237 (53.59%), Postives = 159/237 (67.09%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GL+ R+A+LG+R+ ST ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DESEN+V
Sbjct: 100 GLMIRMAALGLRNNST-IDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVV 159

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F++YVKP IPVTNYRYE TGIRPE+LRDAM LK  Q+K+Q+ L NG           KAR
Sbjct: 160 FHTYVKPTIPVTNYRYEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKAR 219

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH +++ L  LQ+ Y S MIR                           ++I  G+QD
Sbjct: 220 ILVGHGLDNHLDSLQLEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQD 279

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  MRLY RMR Q HR E +P+ASD QN NNFAAWR+NELERMSPE++L++S
Sbjct: 280 PYEDCVATMRLYTRMRYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLS 335

[Close]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match: AT3G27970.1 (AT3G27970.1 Exonuclease family protein)

HSP 1 Score: 227.6 bits (579), Expect = 6.6e-60
Identity = 124/237 (52.32%), Postives = 160/237 (67.51%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GL  R+A+LG+RD    ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DES+N++
Sbjct: 109 GLTTRMAALGLRD-KAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVI 168

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F++YVKP + VT+YRYETTGIRPE+LRDAMPLKQVQ+KIQ+ L NG         G KAR
Sbjct: 169 FHTYVKPSMAVTSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKAR 228

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH ++ DL RLQ+ YPS MIR                           +++  G+QD
Sbjct: 229 ILVGHGLDHDLDRLQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQD 288

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  MRLY RMR Q H+IE +P+A+D QN++N  AWR++E ERMSP++ML IS
Sbjct: 289 PYEDCVATMRLYTRMRYQKHKIEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSIS 344

[Close]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match: AT2G48100.1 (AT2G48100.1 Exonuclease family protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 77/220 (35.00%), Postives = 126/220 (57.27%), Query Frame = 1 

Query: 14  RDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIVFYSYVKPIIPV 73
           R+ S+++ G R +    +AL C+ VGGG DG++D CA VCL+D+ EN++F ++V+P++PV
Sbjct: 119 RNPSSSLAGSRLKA---MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPV 178

Query: 74  TNYRYETTGIRPEHLRDAMPLKQVQKKIQDIL---YNGGEKARVLVGHCVEDDLKRLQIG 133
           T+YR+E TG+  E L+D MPL+ V++++   L    N G    +LVGH +  D+  L++ 
Sbjct: 179 TDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLE 238

Query: 134 YPSIMIR---------------------------FEIQNGVQDLY-DCVGGMRLYKRMRS 193
           YPS ++R                           ++IQ G  ++Y DCV  MRLYKRMR 
Sbjct: 239 YPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRD 298

Query: 194 QVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           Q H      + S     N   + ++++LE+M+ E++ + S
Sbjct: 299 QEH------VCSGKAEGNGLNSRKQSDLEKMNAEELYQKS 329

[Close]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match: AT3G50100.1 (AT3G50100.1 small RNA degrading nuclease 1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-08
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 1 

Query: 31  VALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHLRDA 90
           VA+ C+ V   DG+ +   +V ++D    ++   +VKP  PV +YR + TGI  E + +A
Sbjct: 141 VAVDCEMVLCEDGT-EGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENA 200

Query: 91  -MPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIM 135
            + +  +Q+ +Q  L  G     +LVGH +  DL+ L+I +P ++
Sbjct: 201 SLSVVDIQETLQPFLSTG----TILVGHSLNRDLEVLKIDHPKVI 240

[Close]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match: AT5G67240.1 (AT5G67240.1 small RNA degrading nuclease 3)

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-07
Identity = 32/105 (30.48%), Postives = 57/105 (54.29%), Query Frame = 1 

Query: 31  VALACKYVGGGDGSLDVCAKVCLIDESENIVFYSYVKPIIPVTNYRYETTGIRPEHL-RD 90
           +++ C+ V   DGS     +V  +D    +V   +VKP  PV +Y+ + TG+  E L R 
Sbjct: 146 LSIDCEMVTCEDGS-QALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 205

Query: 91  AMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIM 135
            + +  +QKK++  L  G     +LVGH + +DL+ L+I +  ++
Sbjct: 206 TLSVADIQKKLRRFLSVG----TILVGHGLHNDLQVLRIDHARVI 245

[Close]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: gi|778708714|ref|XP_011656270.1| (PREDICTED: RNA exonuclease 4-like [Cucumis sativus])

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 166/228 (72.81%), Postives = 185/228 (81.14%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLLAR A+LGIRDGST ID GRTRGSG +ALACKYVGGG DGS+D+CAKVCLIDE EN++
Sbjct: 104 GLLARFANLGIRDGSTVIDSGRTRGSGAIALACKYVGGGSDGSMDICAKVCLIDEGENVI 163

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVED 122
           FYSYVKP+  VTNYRYETTGIRPEH+RDAMP+KQVQKKIQ+ILYNGGEKAR+LVG CVED
Sbjct: 164 FYSYVKPVTAVTNYRYETTGIRPEHIRDAMPVKQVQKKIQEILYNGGEKARILVGDCVED 223

Query: 123 DLKRLQIGYPSIMIR---------------------------FEIQNGVQDLY-DCVGGM 182
           DLKRLQIGYPS MIR                           F++QNG+QD Y +C+  M
Sbjct: 224 DLKRLQIGYPSFMIRDTANYPPLMKSSKLCNSLKYLAQVYLGFDLQNGIQDPYEECIVAM 283

Query: 183 RLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           RLYKRMRSQVHR E++PMASDPQNKNNFA WRENEL+RMSPEQMLEIS
Sbjct: 284 RLYKRMRSQVHRKENYPMASDPQNKNNFAIWRENELQRMSPEQMLEIS 331

[Close]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: gi|658309786|ref|NP_001280843.1| (RNA exonuclease 4-like [Malus domestica])

HSP 1 Score: 270.4 bits (690), Expect = 2.5e-69
Identity = 145/237 (61.18%), Postives = 170/237 (71.73%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLL R A+LGIRD +   +GG TRG+  VALACK VGGG DGSLD+CAKVCL DE +NI+
Sbjct: 107 GLLGRFANLGIRDNT---EGGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLTDEYDNII 166

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F SYVKP++PVTNYRYETTGIRPE+LRDAMPL+QVQKKIQD L NG         G KAR
Sbjct: 167 FQSYVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKAR 226

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH ++ DL  LQ  YP +MIR                           +EIQ G+QD
Sbjct: 227 ILVGHGLDHDLDSLQFEYPQVMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYEIQTGIQD 286

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  M+LY RMRSQVH++E +P+ASDPQN+NNFAAWR+NELERMSP+QMLEIS
Sbjct: 287 PYEDCVATMKLYMRMRSQVHKVEAYPLASDPQNRNNFAAWRQNELERMSPDQMLEIS 340

[Close]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: gi|595938084|ref|XP_007215630.1| (hypothetical protein PRUPE_ppa008078mg [Prunus persica])

HSP 1 Score: 269.6 bits (688), Expect = 4.3e-69
Identity = 143/229 (62.45%), Postives = 169/229 (73.80%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLL R A+LGIRD +   + G TRG+  VALACK VGGG DGSLD+CAKVCLIDE ENI+
Sbjct: 107 GLLGRFANLGIRDNT---ENGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLIDEYENII 166

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F SYVKP++PVTNYRYETTGIRPE+LRDAMPL+QVQKKIQD L NG         G KAR
Sbjct: 167 FQSYVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKAR 226

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR-------------------FEIQNGVQDLY-DCVGG 182
           +LVGH ++ DL  LQ+ YP +MIR                   ++IQ G+QD Y DCV  
Sbjct: 227 ILVGHGLDHDLDSLQVEYPQVMIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYEDCVAT 286

Query: 183 MRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
           M+LY RMRSQVH+ E +P+ASDPQN+NNFA+WR+NELERM+PEQMLE S
Sbjct: 287 MKLYMRMRSQVHKTEAYPLASDPQNRNNFASWRQNELERMNPEQMLEAS 332

[Close]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: gi|694411412|ref|XP_009334070.1| (PREDICTED: RNA exonuclease 4 [Pyrus x bretschneideri])

HSP 1 Score: 269.2 bits (687), Expect = 5.6e-69
Identity = 145/237 (61.18%), Postives = 169/237 (71.31%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLL R A+LGIRD +   + G TRG+  VALACK VGGG DGSLD+CAKVCL DE ENI+
Sbjct: 105 GLLGRFANLGIRDNT---ESGSTRGTQVVALACKMVGGGSDGSLDLCAKVCLTDEYENII 164

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNG---------GEKAR 122
           F SYVKP++PVTNYRYETTGIRPE+LRDAMPL+QVQKKIQD L NG         G KAR
Sbjct: 165 FQSYVKPLLPVTNYRYETTGIRPEYLRDAMPLRQVQKKIQDFLCNGEPMWKIRPRGGKAR 224

Query: 123 VLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQD 182
           +LVGH ++ DL  LQ  YP +MIR                           +EIQ G+QD
Sbjct: 225 ILVGHGLDHDLDSLQFEYPQVMIRDTAKYPPLMKTSKLSNSLKYLTQANLGYEIQTGIQD 284

Query: 183 LY-DCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
            Y DCV  M+LY RMRSQVH++E +P+ASDPQN+NNFAAWR+NELERMSP+QMLEIS
Sbjct: 285 PYEDCVATMKLYMRMRSQVHKVEAYPLASDPQNRNNFAAWRQNELERMSPDQMLEIS 338

[Close]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match: gi|659118043|ref|XP_008458921.1| (PREDICTED: RNA exonuclease 4 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 9.6e-69
Identity = 141/239 (59.00%), Postives = 171/239 (71.55%), Query Frame = 1 

Query: 3   GLLARLASLGIRDGSTAIDGGRTRGSGPVALACKYVGGG-DGSLDVCAKVCLIDESENIV 62
           GLLAR A+LGIRDGST ID GRTRGSG +ALACKYVGGG DGSLD+CAKVCL+DE EN++
Sbjct: 104 GLLARFANLGIRDGSTIIDSGRTRGSGAIALACKYVGGGSDGSLDICAKVCLVDEGENVI 163

Query: 63  FYSYVKPIIPVTNYRYETTGIRPEHLRDAMPLKQVQKKIQDILYNGGE----------KA 122
           FYSYVKPIIPVTNYRYE TG+RPEHLRDAMPLKQVQKKIQ+ L NG +          KA
Sbjct: 164 FYSYVKPIIPVTNYRYEFTGVRPEHLRDAMPLKQVQKKIQEFLCNGEQMWKIRPGSTRKA 223

Query: 123 RVLVGHCVEDDLKRLQIGYPSIMIR---------------------------FEIQNGVQ 182
           R+LVGH +++ L  LQI YPSIMIR                           + ++NG +
Sbjct: 224 RILVGHGLQEYLTSLQIDYPSIMIRDTAKYPPLMKTSKLSNSLHYLTQTYLGYNMENGKK 283

Query: 183 D--LYDCVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRENELERMSPEQMLEIS 202
                +CV  MRLY +M+SQVH+ E +P+ASDP NK NFA W++ ELE+M+P+Q+L+IS
Sbjct: 284 SEGYEECVATMRLYLKMKSQVHKREEYPLASDPPNKFNFAIWKQLELEKMTPQQLLQIS 342

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g09020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
REXO4_HUMAN1.4e-1438.06RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2[more]
REXO4_XENLA1.5e-1341.12RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2[more]
REXO4_KLULA1.5e-1337.39RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707... [more]
REXO4_MOUSE3.4e-1337.93RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2[more]
REXO4_YEAST7.5e-1332.23RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RE... [more]
BLAST of Cp4.1LG13g09020 vs. TrEMBL
Match NameE-valueIdentityDescription
D9ZIT5_MALDO1.8e-6961.18C2H2L domain class transcription factor OS=Malus domestica GN=C2H2L25 PE=2 SV=1[more]
M5WT09_PRUPE3.0e-6962.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008078mg PE=4 SV=1[more]
W9S0J7_9ROSA9.7e-6859.92RNA exonuclease 4 OS=Morus notabilis GN=L484_020501 PE=4 SV=1[more]
A0A0D2R3S2_GOSRA6.9e-6657.98Uncharacterized protein OS=Gossypium raimondii GN=B456_007G340600 PE=4 SV=1[more]
A0A061ED94_THECC1.5e-6557.14C2H2L domain class transcription factor OS=Theobroma cacao GN=TCM_016880 PE=4 SV... [more]
BLAST of Cp4.1LG13g09020 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40310.12.3e-6053.59 Exonuclease family protein[more]
AT3G27970.16.6e-6052.32 Exonuclease family protein[more]
AT2G48100.12.2e-3135.00 Exonuclease family protein[more]
AT3G50100.13.5e-0831.43 small RNA degrading nuclease 1[more]
AT5G67240.15.0e-0730.48 small RNA degrading nuclease 3[more]
BLAST of Cp4.1LG13g09020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708714|ref|XP_011656270.1|1.2e-8772.81PREDICTED: RNA exonuclease 4-like [Cucumis sativus][more]
gi|658309786|ref|NP_001280843.1|2.5e-6961.18RNA exonuclease 4-like [Malus domestica][more]
gi|595938084|ref|XP_007215630.1|4.3e-6962.45hypothetical protein PRUPE_ppa008078mg [Prunus persica][more]
gi|694411412|ref|XP_009334070.1|5.6e-6961.18PREDICTED: RNA exonuclease 4 [Pyrus x bretschneideri][more]
gi|659118043|ref|XP_008458921.1|9.6e-6959.00PREDICTED: RNA exonuclease 4 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006364 rRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008408 3'-5' exonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g09020.1Cp4.1LG13g09020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 30..135
score: 1.0
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 43..151
score: 4.83
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 55..131
score: 2.
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 29..165
score: 1.
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 3..201
score: 3.7
NoneNo IPR availablePANTHERPTHR12801:SF56EXONUCLEASE FAMILY PROTEINcoord: 3..201
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g09020Cucsa.159050Cucumber (Gy14) v1cgycpeB0424
Cp4.1LG13g09020CmaCh04G027120Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g09020CmoCh04G028420Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g09020Cla010399Watermelon (97103) v1cpewmB166
Cp4.1LG13g09020ClCG09G018910Watermelon (Charleston Gray)cpewcgB154
Cp4.1LG13g09020Lsi02G015610Bottle gourd (USVL1VR-Ls)cpelsiB141
Cp4.1LG13g09020CsaV3_5G037210Cucumber (Chinese Long) v3cpecucB0210
Cp4.1LG13g09020CsGy5G027480Cucumber (Gy14) v2cgybcpeB598
Cp4.1LG13g09020Carg04429Silver-seed gourdcarcpeB0962
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g09020Cp4.1LG01g23270Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g09020Wax gourdcpewgoB0216
Cp4.1LG13g09020Wax gourdcpewgoB0239
Cp4.1LG13g09020Cucurbita pepo (Zucchini)cpecpeB218
Cp4.1LG13g09020Cucurbita pepo (Zucchini)cpecpeB220
Cp4.1LG13g09020Cucumber (Gy14) v1cgycpeB0880
Cp4.1LG13g09020Cucurbita maxima (Rimu)cmacpeB263
Cp4.1LG13g09020Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g09020Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g09020Wild cucumber (PI 183967)cpecpiB173
Cp4.1LG13g09020Wild cucumber (PI 183967)cpecpiB177
Cp4.1LG13g09020Cucumber (Chinese Long) v2cpecuB172
Cp4.1LG13g09020Cucumber (Chinese Long) v2cpecuB175
Cp4.1LG13g09020Bottle gourd (USVL1VR-Ls)cpelsiB144
Cp4.1LG13g09020Watermelon (Charleston Gray)cpewcgB156
Cp4.1LG13g09020Watermelon (97103) v1cpewmB168
Cp4.1LG13g09020Melon (DHL92) v3.5.1cpemeB155
Cp4.1LG13g09020Melon (DHL92) v3.5.1cpemeB172
Cp4.1LG13g09020Cucumber (Gy14) v2cgybcpeB312
Cp4.1LG13g09020Melon (DHL92) v3.6.1cpemedB182
Cp4.1LG13g09020Melon (DHL92) v3.6.1cpemedB194
Cp4.1LG13g09020Melon (DHL92) v3.6.1cpemedB206
Cp4.1LG13g09020Silver-seed gourdcarcpeB0366
Cp4.1LG13g09020Silver-seed gourdcarcpeB0515
Cp4.1LG13g09020Silver-seed gourdcarcpeB0609
Cp4.1LG13g09020Cucumber (Chinese Long) v3cpecucB0192
Cp4.1LG13g09020Cucumber (Chinese Long) v3cpecucB0203